Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:39:23 (27129): wrapper (7.7.26015): starting
22:39:23 (27129): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 22:39:23] Arguments: --nthreads 8
[2025-06-02 22:39:23] Threads: 8
[2025-06-02 22:39:23] Checking for CVMFS
[2025-06-02 22:39:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 22:39:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 22:39:24] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 22:39:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 22:39:25] 2.11.2.0 31978 30931 90824 146718 0 114 21192877 25165825 4353 130560 0 16234694 99.813 17810225 2456 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 22:39:25] CVMFS is ok
[2025-06-02 22:39:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 22:39:25] Checking for apptainer binary...
[2025-06-02 22:39:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 22:39:25] Running /usr/bin/apptainer --version
[2025-06-02 22:39:25] apptainer version 1.3.2-1.el7
[2025-06-02 22:39:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 22:39:27] cg-vwn266.simple-grid.lan
[2025-06-02 22:39:27] apptainer works
[2025-06-02 22:39:27] Set ATHENA_PROC_NUMBER=8
[2025-06-02 22:39:27] Set ATHENA_CORE_NUMBER=8
[2025-06-02 22:39:27] Starting ATLAS job with PandaID=6677377687
[2025-06-02 22:39:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 04:08:39]  *** The last 200 lines of the pilot log: ***
[2025-06-03 04:08:39] 2025-06-03 00:20:30,372 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6677377687/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,373 | INFO     | extracted standard info from prmon json
[2025-06-03 04:08:39] 2025-06-03 00:20:30,373 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:08:39] 2025-06-03 00:20:30,374 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:08:39] 2025-06-03 00:20:30,374 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:08:39] 2025-06-03 00:20:30,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:08:39] 2025-06-03 00:20:30,380 | INFO     | fitting pss+swap vs Time
[2025-06-03 04:08:39] 2025-06-03 00:20:30,380 | INFO     | sum of square deviations: 3124858590.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,382 | INFO     | sum of deviations: -57125223788.49998
[2025-06-03 04:08:39] 2025-06-03 00:20:30,383 | INFO     | mean x: 1748903404.5
[2025-06-03 04:08:39] 2025-06-03 00:20:30,383 | INFO     | mean y: 2598341.6157407407
[2025-06-03 04:08:39] 2025-06-03 00:20:30,383 | INFO     | -- intersect: 31974124568.833595
[2025-06-03 04:08:39] 2025-06-03 00:20:30,383 | INFO     | intersect: 31974124568.833595
[2025-06-03 04:08:39] 2025-06-03 00:20:30,383 | INFO     | chi2: 2.823145023650696
[2025-06-03 04:08:39] 2025-06-03 00:20:30,384 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,385 | INFO     | sum of deviations: -38938547118.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,386 | INFO     | mean x: 1748903252.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,386 | INFO     | mean y: 2611230.9431279623
[2025-06-03 04:08:39] 2025-06-03 00:20:30,386 | INFO     | -- intersect: 23381803004.53886
[2025-06-03 04:08:39] 2025-06-03 00:20:30,386 | INFO     | intersect: 23381803004.53886
[2025-06-03 04:08:39] 2025-06-03 00:20:30,386 | INFO     | chi2: 2.056393969253781
[2025-06-03 04:08:39] 2025-06-03 00:20:30,387 | INFO     | current chi2=2.056393969253781 (change=27.159463930244904 %)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,387 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 04:08:39] 2025-06-03 00:20:30,389 | INFO     | sum of deviations: -35242823749.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,389 | INFO     | mean x: 1748903099.5
[2025-06-03 04:08:39] 2025-06-03 00:20:30,389 | INFO     | mean y: 2614018.6796116503
[2025-06-03 04:08:39] 2025-06-03 00:20:30,389 | INFO     | -- intersect: 22741364420.53035
[2025-06-03 04:08:39] 2025-06-03 00:20:30,389 | INFO     | intersect: 22741364420.53035
[2025-06-03 04:08:39] 2025-06-03 00:20:30,389 | INFO     | chi2: 2.057629586376343
[2025-06-03 04:08:39] 2025-06-03 00:20:30,390 | INFO     | current chi2=2.057629586376343 (change=-0.06008659532347265 %)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,390 | INFO     | right removable region: 205
[2025-06-03 04:08:39] 2025-06-03 00:20:30,390 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,392 | INFO     | sum of deviations: -99049281005.00003
[2025-06-03 04:08:39] 2025-06-03 00:20:30,392 | INFO     | mean x: 1748903557.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,392 | INFO     | mean y: 2628268.805687204
[2025-06-03 04:08:39] 2025-06-03 00:20:30,392 | INFO     | -- intersect: 59473068510.97266
[2025-06-03 04:08:39] 2025-06-03 00:20:30,392 | INFO     | intersect: 59473068510.97266
[2025-06-03 04:08:39] 2025-06-03 00:20:30,392 | INFO     | chi2: 1.0156195114001303
[2025-06-03 04:08:39] 2025-06-03 00:20:30,393 | INFO     | current chi2=1.0156195114001303 (change=64.025244792887 %)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,393 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | sum of deviations: -100579275624.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | mean x: 1748903709.5
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | mean y: 2629383.4660194176
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | -- intersect: 64896630443.106804
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | intersect: 64896630443.106804
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | chi2: 0.9628496653093026
[2025-06-03 04:08:39] 2025-06-03 00:20:30,395 | INFO     | current chi2=0.9628496653093026 (change=5.195828309568347 %)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,396 | INFO     | left removable region: 20
[2025-06-03 04:08:39] 2025-06-03 00:20:30,396 | INFO     | sum of square deviations: 1963274020.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,397 | INFO     | sum of deviations: -71726905815.00002
[2025-06-03 04:08:39] 2025-06-03 00:20:30,397 | INFO     | mean x: 1748903679.0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,397 | INFO     | mean y: 2643562.037837838
[2025-06-03 04:08:39] 2025-06-03 00:20:30,398 | INFO     | -- intersect: 63897672063.02111
[2025-06-03 04:08:39] 2025-06-03 00:20:30,398 | INFO     | intersect: 63897672063.02111
[2025-06-03 04:08:39] 2025-06-03 00:20:30,398 | INFO     | chi2: 0.15103229874241003
[2025-06-03 04:08:39] 2025-06-03 00:20:30,398 | INFO     | -- intersect: 63897672063.02111
[2025-06-03 04:08:39] 2025-06-03 00:20:30,398 | INFO     | current memory leak: -36.53 B/s (using 185 data points, chi2=0.15)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,399 | INFO     | ..............................
[2025-06-03 04:08:39] 2025-06-03 00:20:30,399 | INFO     | . Timing measurements:
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . get job = 0 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . initial setup = 2 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . payload setup = 16 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . stage-in = 0 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . payload execution = 13148 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . stage-out = 2 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | . log creation = 0 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,400 | INFO     | ..............................
[2025-06-03 04:08:39] 2025-06-03 00:20:30,521 | INFO     | 
[2025-06-03 04:08:39] 2025-06-03 00:20:30,521 | INFO     | job summary report
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | --------------------------------------------------
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | PanDA job id: 6677377687
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | task id: 45006595
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | errors: (none)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | pilot state: finished 
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | transexitcode: 0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | exeerrorcode: 0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | exeerrordiag: 
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | exitcode: 0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,522 | INFO     | exitmsg: OK
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | cpuconsumptiontime: 49239 s
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | nevents: 400
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | neventsw: 0
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | pid: 7008
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | pgrp: 7008
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | corecount: 8
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | event service: False
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | sizes: {0: 2404945, 1: 2405200, 2: 2405200, 10: 2405434, 12: 2405462, 13169: 2435090, 13173: 2444031, 13176: 2444087, 13222: 2444257}
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | --------------------------------------------------
[2025-06-03 04:08:39] 2025-06-03 00:20:30,523 | INFO     | 
[2025-06-03 04:08:39] 2025-06-03 00:20:30,524 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 04:08:39] 2025-06-03 00:20:30,698 | INFO     | job 6677377687 has completed (purged errors)
[2025-06-03 04:08:39] 2025-06-03 00:20:30,698 | INFO     | overall cleanup function is called
[2025-06-03 04:08:39] 2025-06-03 00:20:31,707 | INFO     | --- collectZombieJob: --- 10, [7008]
[2025-06-03 04:08:39] 2025-06-03 00:20:31,707 | INFO     | zombie collector waiting for pid 7008
[2025-06-03 04:08:39] 2025-06-03 00:20:31,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 04:08:39] 2025-06-03 00:20:31,708 | INFO     | collected zombie processes
[2025-06-03 04:08:39] 2025-06-03 00:20:31,708 | INFO     | will attempt to kill all subprocesses of pid=7008
[2025-06-03 04:08:39] 2025-06-03 00:20:31,802 | INFO     | process IDs to be killed: [7008] (in reverse order)
[2025-06-03 04:08:39] 2025-06-03 00:20:32,052 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 04:08:39] 2025-06-03 00:20:32,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 04:08:39] 2025-06-03 00:20:32,056 | INFO     | did not find any defunct processes belonging to 7008
[2025-06-03 04:08:39] 2025-06-03 00:20:32,059 | INFO     | did not find any defunct processes belonging to 7008
[2025-06-03 04:08:39] 2025-06-03 00:20:32,059 | INFO     | ready for new job
[2025-06-03 04:08:39] 2025-06-03 00:20:32,060 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 04:08:39] 2025-06-03 00:20:32,061 | INFO     | **************************************
[2025-06-03 04:08:39] 2025-06-03 00:20:32,061 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 04:08:39] 2025-06-03 00:20:32,062 | INFO     | **************************************
[2025-06-03 04:08:39] 2025-06-03 00:20:32,062 | INFO     | 
[2025-06-03 04:08:39] 2025-06-03 00:20:32,062 | INFO     | pilot is running in a VM
[2025-06-03 04:08:39] 2025-06-03 00:20:32,062 | INFO     | architecture information:
[2025-06-03 04:08:39] 2025-06-03 00:20:32,063 | INFO     | executing command: cat /etc/os-release
[2025-06-03 04:08:39] 2025-06-03 00:20:32,264 | INFO     | cat /etc/os-release:
[2025-06-03 04:08:39] NAME="CentOS Linux"
[2025-06-03 04:08:39] VERSION="7 (Core)"
[2025-06-03 04:08:39] ID="centos"
[2025-06-03 04:08:39] ID_LIKE="rhel fedora"
[2025-06-03 04:08:39] VERSION_ID="7"
[2025-06-03 04:08:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 04:08:39] ANSI_COLOR="0;31"
[2025-06-03 04:08:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 04:08:39] HOME_URL="https://www.centos.org/"
[2025-06-03 04:08:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 04:08:39] 
[2025-06-03 04:08:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 04:08:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 04:08:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 04:08:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 04:08:39] 
[2025-06-03 04:08:39] 2025-06-03 00:20:32,264 | INFO     | **************************************
[2025-06-03 04:08:39] 2025-06-03 00:20:32,770 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 04:08:39] 2025-06-03 00:20:33,005 | INFO     | sufficient remaining disk space (497079549952 B)
[2025-06-03 04:08:39] 2025-06-03 00:20:33,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 04:08:39] 2025-06-03 00:20:33,006 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 04:08:39] 2025-06-03 00:20:33,006 | INFO     | update_server=False
[2025-06-03 04:08:39] 2025-06-03 00:20:33,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 04:08:39] 2025-06-03 00:20:33,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 04:08:39] 2025-06-03 00:20:33,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:08:39] 2025-06-03 00:20:33,014 | INFO     | aborting loop
[2025-06-03 04:08:39] 2025-06-03 00:20:33,241 | INFO     | all data control threads have been joined
[2025-06-03 04:08:39] 2025-06-03 00:20:33,581 | INFO     | all payload control threads have been joined
[2025-06-03 04:08:39] 2025-06-03 00:20:33,893 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 04:08:39] 2025-06-03 00:20:33,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 04:08:39] 2025-06-03 00:20:33,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 04:08:39] 2025-06-03 00:20:34,013 | INFO     | [job] retrieve thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,019 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,020 | INFO     | [job] job monitor thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,059 | INFO     | all job control threads have been joined
[2025-06-03 04:08:39] 2025-06-03 00:20:34,221 | INFO     | [job] validate thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,247 | INFO     | [data] control thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,424 | INFO     | [data] copytool_in thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,587 | INFO     | [payload] control thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,706 | INFO     | [payload] failed_post thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,710 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:34,918 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:35,014 | INFO     | [data] copytool_out thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:35,065 | INFO     | [job] control thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:35,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:35,272 | INFO     | [payload] validate_post thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:35,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:08:39] 2025-06-03 00:20:36,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 04:08:39] 2025-06-03 00:20:36,541 | INFO     | [job] queue monitor thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:40,089 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 04:08:39] 2025-06-03 00:20:41,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424120354624)>', '<ExcThread(monitor, started 140423553087232)>']
[2025-06-03 04:08:39] 2025-06-03 00:20:41,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 04:08:39] 2025-06-03 00:20:41,940 | INFO     | [monitor] control thread has ended
[2025-06-03 04:08:39] 2025-06-03 00:20:46,183 | INFO     | all workflow threads have been joined
[2025-06-03 04:08:39] 2025-06-03 00:20:46,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 04:08:39] 2025-06-03 00:20:46,183 | INFO     | traces error code: 0
[2025-06-03 04:08:39] 2025-06-03 00:20:46,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 04:08:39] 2025-06-03 00:20:46,444 [wrapper] ==== pilot stdout END ====
[2025-06-03 04:08:39] 2025-06-03 00:20:46,478 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 04:08:39] 2025-06-03 00:20:46,557 [wrapper] pilotpid: 30821
[2025-06-03 04:08:39] 2025-06-03 00:20:46,665 [wrapper] Pilot exit status: 0
[2025-06-03 04:08:39] 2025-06-03 00:20:47,075 [wrapper] pandaids: 6677377687
[2025-06-03 04:08:39] 2025-06-03 00:20:47,756 [wrapper] cleanup supervisor_pilot  3064 30822
[2025-06-03 04:08:39] 2025-06-03 00:20:47,849 [wrapper] Test setup, not cleaning
[2025-06-03 04:08:39] 2025-06-03 00:20:47,911 [wrapper] apfmon messages muted
[2025-06-03 04:08:39] 2025-06-03 00:20:48,000 [wrapper] ==== wrapper stdout END ====
[2025-06-03 04:08:39] 2025-06-03 00:20:48,055 [wrapper] ==== wrapper stderr END ====
[2025-06-03 04:08:39]  *** Error codes and diagnostics ***
[2025-06-03 04:08:39]     "exeErrorCode": 0,
[2025-06-03 04:08:39]     "exeErrorDiag": "",
[2025-06-03 04:08:39]     "pilotErrorCode": 0,
[2025-06-03 04:08:39]     "pilotErrorDiag": "",
[2025-06-03 04:08:39]  *** Listing of results directory ***
[2025-06-03 04:08:39] total 392504
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 04:08:39] -rwx------. 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc       100 Jun  2 22:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 04:08:39] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 22:39 run_atlas
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc       105 Jun  2 22:39 job.xml
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc      6391 Jun  2 22:39 init_data.xml
[2025-06-03 04:08:39] -rw-r--r--. 2 boinc boinc 216843750 Jun  2 22:39 EVNT.45006593._000031.pool.root.1
[2025-06-03 04:08:39] -rw-r--r--. 2 boinc boinc     15093 Jun  2 22:39 start_atlas.sh
[2025-06-03 04:08:39] drwxrwx--x. 2 boinc boinc        68 Jun  2 22:39 shared
[2025-06-03 04:08:39] -rw-r--r--. 2 boinc boinc    508875 Jun  2 22:39 input.tar.gz
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc         0 Jun  2 22:39 boinc_lockfile
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc      2519 Jun  2 22:39 pandaJob.out
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc    987975 Jun  2 22:39 agis_schedconf.cvmfs.json
[2025-06-03 04:08:39] drwx------. 4 boinc boinc      4096 Jun  2 22:39 pilot3
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc       530 Jun  3 02:18 boinc_task_state.xml
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc 178207576 Jun  3 02:18 HITS.45006595._000759.pool.root.1
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc      1034 Jun  3 02:19 memory_monitor_summary.json
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc   1603667 Jun  3 02:19 agis_ddmendpoints.agis.ALL.json
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc    373048 Jun  3 02:19 log.45006595._000759.job.log.tgz.1
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc        95 Jun  3 02:20 pilot_heartbeat.json
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc      7690 Jun  3 02:20 heartbeat.json
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc      4416 Jun  3 02:20 pilotlog.txt
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc   1150581 Jun  3 02:20 log.45006595._000759.job.log.1
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc       357 Jun  3 02:20 output.list
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc       620 Jun  3 02:20 runtime_log
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc   1546240 Jun  3 02:20 result.tar.gz
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc      8659 Jun  3 02:20 runtime_log.err
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc       656 Jun  3 02:20 21sLDmxaMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc2eKDmhe8VHn.diag
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc      8192 Jun  3 04:08 boinc_mmap_file
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc        28 Jun  3 04:08 wrapper_checkpoint.txt
[2025-06-03 04:08:39] -rw-r--r--. 1 boinc boinc     20424 Jun  3 04:08 stderr.txt
[2025-06-03 04:08:39] HITS file was successfully produced:
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc 178207576 Jun  3 02:18 shared/HITS.pool.root.1
[2025-06-03 04:08:39]  *** Contents of shared directory: ***
[2025-06-03 04:08:39] total 387824
[2025-06-03 04:08:39] -rw-r--r--. 2 boinc boinc 216843750 Jun  2 22:39 ATLAS.root_0
[2025-06-03 04:08:39] -rw-r--r--. 2 boinc boinc     15093 Jun  2 22:39 start_atlas.sh
[2025-06-03 04:08:39] -rw-r--r--. 2 boinc boinc    508875 Jun  2 22:39 input.tar.gz
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc 178207576 Jun  3 02:18 HITS.pool.root.1
[2025-06-03 04:08:39] -rw-------. 1 boinc boinc   1546240 Jun  3 02:20 result.tar.gz
04:08:41 (27129): run_atlas exited; CPU time 49408.723238
04:08:41 (27129): called boinc_finish(0)

</stderr_txt>
]]>

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