Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:59:56 (2124): wrapper (7.7.26015): starting
17:59:56 (2124): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 17:59:56] Arguments: --nthreads 8
[2025-06-02 17:59:56] Threads: 8
[2025-06-02 17:59:56] Checking for CVMFS
[2025-06-02 17:59:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 17:59:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 17:59:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 17:59:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 17:59:59] 2.11.2.0 1304 30536 90084 146710 0 16 19849727 25165825 4632 130560 0 16118266 99.823 17047691 1953 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 17:59:59] CVMFS is ok
[2025-06-02 17:59:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 17:59:59] Checking for apptainer binary...
[2025-06-02 17:59:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 17:59:59] Running /usr/bin/apptainer --version
[2025-06-02 17:59:59] apptainer version 1.3.2-1.el7
[2025-06-02 17:59:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:00:06] cg-vwn245.simple-grid.lan
[2025-06-02 18:00:06] apptainer works
[2025-06-02 18:00:06] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:00:06] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:00:06] Starting ATLAS job with PandaID=6677377607
[2025-06-02 18:00:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:18:04]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:18:04] 2025-06-02 19:46:33,578 | INFO     | extracted standard info from prmon json
[2025-06-02 22:18:04] 2025-06-02 19:46:33,579 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:18:04] 2025-06-02 19:46:33,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:18:04] 2025-06-02 19:46:33,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:18:04] 2025-06-02 19:46:33,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:18:04] 2025-06-02 19:46:33,584 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:18:04] 2025-06-02 19:46:33,584 | INFO     | sum of square deviations: 2871616632.5
[2025-06-02 22:18:04] 2025-06-02 19:46:33,586 | INFO     | sum of deviations: 101253824665.00002
[2025-06-02 22:18:04] 2025-06-02 19:46:33,586 | INFO     | mean x: 1748887094.5
[2025-06-02 22:18:04] 2025-06-02 19:46:33,586 | INFO     | mean y: 2388495.0285714287
[2025-06-02 22:18:04] 2025-06-02 19:46:33,586 | INFO     | -- intersect: -61663749394.42187
[2025-06-02 22:18:04] 2025-06-02 19:46:33,586 | INFO     | intersect: -61663749394.42187
[2025-06-02 22:18:04] 2025-06-02 19:46:33,587 | INFO     | chi2: 7.778360525649461
[2025-06-02 22:18:04] 2025-06-02 19:46:33,587 | INFO     | sum of square deviations: 2671343110.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,589 | INFO     | sum of deviations: 112253724024.00003
[2025-06-02 22:18:04] 2025-06-02 19:46:33,589 | INFO     | mean x: 1748886942.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,589 | INFO     | mean y: 2396667.673170732
[2025-06-02 22:18:04] 2025-06-02 19:46:33,589 | INFO     | -- intersect: -73488377093.86185
[2025-06-02 22:18:04] 2025-06-02 19:46:33,589 | INFO     | intersect: -73488377093.86185
[2025-06-02 22:18:04] 2025-06-02 19:46:33,590 | INFO     | chi2: 7.079976099251571
[2025-06-02 22:18:04] 2025-06-02 19:46:33,590 | INFO     | current chi2=7.079976099251571 (change=8.978555623578249 %)
[2025-06-02 22:18:04] 2025-06-02 19:46:33,590 | INFO     | right removable region: 204
[2025-06-02 22:18:04] 2025-06-02 19:46:33,590 | INFO     | sum of square deviations: 2671343110.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,592 | INFO     | sum of deviations: 29469445382.000008
[2025-06-02 22:18:04] 2025-06-02 19:46:33,592 | INFO     | mean x: 1748887247.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,592 | INFO     | mean y: 2443113.0780487806
[2025-06-02 22:18:04] 2025-06-02 19:46:33,592 | INFO     | -- intersect: -19290749517.928776
[2025-06-02 22:18:04] 2025-06-02 19:46:33,592 | INFO     | intersect: -19290749517.928776
[2025-06-02 22:18:04] 2025-06-02 19:46:33,593 | INFO     | chi2: 2.7612312669048533
[2025-06-02 22:18:04] 2025-06-02 19:46:33,593 | INFO     | current chi2=2.7612312669048533 (change=64.50111488404812 %)
[2025-06-02 22:18:04] 2025-06-02 19:46:33,593 | INFO     | sum of square deviations: 2480604650.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,594 | INFO     | sum of deviations: -13888151758.999996
[2025-06-02 22:18:04] 2025-06-02 19:46:33,595 | INFO     | mean x: 1748887399.5
[2025-06-02 22:18:04] 2025-06-02 19:46:33,595 | INFO     | mean y: 2477614.43
[2025-06-02 22:18:04] 2025-06-02 19:46:33,595 | INFO     | -- intersect: 9793966803.83342
[2025-06-02 22:18:04] 2025-06-02 19:46:33,595 | INFO     | intersect: 9793966803.83342
[2025-06-02 22:18:04] 2025-06-02 19:46:33,595 | INFO     | chi2: 0.8747773259759271
[2025-06-02 22:18:04] 2025-06-02 19:46:33,595 | INFO     | current chi2=0.8747773259759271 (change=68.3193024626115 %)
[2025-06-02 22:18:04] 2025-06-02 19:46:33,596 | INFO     | sum of square deviations: 2299168690.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,597 | INFO     | sum of deviations: -14038823344.999994
[2025-06-02 22:18:04] 2025-06-02 19:46:33,597 | INFO     | mean x: 1748887552.0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,597 | INFO     | mean y: 2477672.394871795
[2025-06-02 22:18:04] 2025-06-02 19:46:33,598 | INFO     | -- intersect: 10681260616.676136
[2025-06-02 22:18:04] 2025-06-02 19:46:33,598 | INFO     | intersect: 10681260616.676136
[2025-06-02 22:18:04] 2025-06-02 19:46:33,598 | INFO     | chi2: 0.8433292348829077
[2025-06-02 22:18:04] 2025-06-02 19:46:33,598 | INFO     | current chi2=0.8433292348829077 (change=3.594982421147573 %)
[2025-06-02 22:18:04] 2025-06-02 19:46:33,598 | INFO     | left removable region: 30
[2025-06-02 22:18:04] 2025-06-02 19:46:33,599 | INFO     | sum of square deviations: 1633472487.5
[2025-06-02 22:18:04] 2025-06-02 19:46:33,600 | INFO     | sum of deviations: 3735408596.5000005
[2025-06-02 22:18:04] 2025-06-02 19:46:33,600 | INFO     | mean x: 1748887826.5
[2025-06-02 22:18:04] 2025-06-02 19:46:33,600 | INFO     | mean y: 2484297.8448275863
[2025-06-02 22:18:04] 2025-06-02 19:46:33,600 | INFO     | -- intersect: -3996854945.0344014
[2025-06-02 22:18:04] 2025-06-02 19:46:33,600 | INFO     | intersect: -3996854945.0344014
[2025-06-02 22:18:04] 2025-06-02 19:46:33,600 | INFO     | chi2: 0.00044540781039276395
[2025-06-02 22:18:04] 2025-06-02 19:46:33,601 | INFO     | -- intersect: -3996854945.0344014
[2025-06-02 22:18:04] 2025-06-02 19:46:33,601 | INFO     | current memory leak: 2.29 B/s (using 174 data points, chi2=0.00)
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | ..............................
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . Timing measurements:
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . get job = 0 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . initial setup = 11 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . payload setup = 179 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . stage-in = 0 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . payload execution = 12927 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . stage-out = 6 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | . log creation = 1 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,602 | INFO     | ..............................
[2025-06-02 22:18:04] 2025-06-02 19:46:33,755 | INFO     | 
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | job summary report
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | --------------------------------------------------
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | PanDA job id: 6677377607
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | task id: 45006595
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | errors: (none)
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:18:04] 2025-06-02 19:46:33,756 | INFO     | pilot state: finished 
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | transexitcode: 0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | exeerrorcode: 0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | exeerrordiag: 
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | exitcode: 0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | exitmsg: OK
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | cpuconsumptiontime: 47659 s
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | nevents: 400
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | neventsw: 0
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | pid: 14440
[2025-06-02 22:18:04] 2025-06-02 19:46:33,757 | INFO     | pgrp: 14440
[2025-06-02 22:18:04] 2025-06-02 19:46:33,758 | INFO     | corecount: 8
[2025-06-02 22:18:04] 2025-06-02 19:46:33,758 | INFO     | event service: False
[2025-06-02 22:18:04] 2025-06-02 19:46:33,758 | INFO     | sizes: {0: 2404944, 1: 2405199, 12: 2405199, 23: 2405227, 34: 2405255, 44: 2405283, 55: 2405439, 66: 2405467, 76: 2405495, 87: 2405551, 96: 2405785, 98: 2406093, 1
[2025-06-02 22:18:04] 2025-06-02 19:46:33,758 | INFO     | --------------------------------------------------
[2025-06-02 22:18:04] 2025-06-02 19:46:33,758 | INFO     | 
[2025-06-02 22:18:04] 2025-06-02 19:46:33,758 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-06-02 22:18:04] 2025-06-02 19:46:34,201 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,201 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,201 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,201 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,202 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:18:04] 2025-06-02 19:46:34,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,203 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:18:04] 2025-06-02 19:46:34,203 | INFO     | job 6677377607 has completed (purged errors)
[2025-06-02 22:18:04] 2025-06-02 19:46:34,203 | INFO     | overall cleanup function is called
[2025-06-02 22:18:04] 2025-06-02 19:46:35,213 | INFO     | --- collectZombieJob: --- 10, [14440]
[2025-06-02 22:18:04] 2025-06-02 19:46:35,213 | INFO     | zombie collector waiting for pid 14440
[2025-06-02 22:18:04] 2025-06-02 19:46:35,213 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:18:04] 2025-06-02 19:46:35,213 | INFO     | collected zombie processes
[2025-06-02 22:18:04] 2025-06-02 19:46:35,213 | INFO     | will attempt to kill all subprocesses of pid=14440
[2025-06-02 22:18:04] 2025-06-02 19:46:35,336 | INFO     | process IDs to be killed: [14440] (in reverse order)
[2025-06-02 22:18:04] 2025-06-02 19:46:35,822 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:18:04] 2025-06-02 19:46:35,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:18:04] 2025-06-02 19:46:35,826 | INFO     | did not find any defunct processes belonging to 14440
[2025-06-02 22:18:04] 2025-06-02 19:46:35,830 | INFO     | did not find any defunct processes belonging to 14440
[2025-06-02 22:18:04] 2025-06-02 19:46:35,830 | INFO     | ready for new job
[2025-06-02 22:18:04] 2025-06-02 19:46:35,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:18:04] 2025-06-02 19:46:35,836 | INFO     | **************************************
[2025-06-02 22:18:04] 2025-06-02 19:46:35,836 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:18:04] 2025-06-02 19:46:35,836 | INFO     | **************************************
[2025-06-02 22:18:04] 2025-06-02 19:46:35,836 | INFO     | 
[2025-06-02 22:18:04] 2025-06-02 19:46:35,837 | INFO     | pilot is running in a VM
[2025-06-02 22:18:04] 2025-06-02 19:46:35,837 | INFO     | architecture information:
[2025-06-02 22:18:04] 2025-06-02 19:46:35,856 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:18:04] 2025-06-02 19:46:36,073 | INFO     | cat /etc/os-release:
[2025-06-02 22:18:04] NAME="CentOS Linux"
[2025-06-02 22:18:04] VERSION="7 (Core)"
[2025-06-02 22:18:04] ID="centos"
[2025-06-02 22:18:04] ID_LIKE="rhel fedora"
[2025-06-02 22:18:04] VERSION_ID="7"
[2025-06-02 22:18:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:18:04] ANSI_COLOR="0;31"
[2025-06-02 22:18:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:18:04] HOME_URL="https://www.centos.org/"
[2025-06-02 22:18:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:18:04] 
[2025-06-02 22:18:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:18:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:18:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:18:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:18:04] 
[2025-06-02 22:18:04] 2025-06-02 19:46:36,074 | INFO     | **************************************
[2025-06-02 22:18:04] 2025-06-02 19:46:36,577 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-06-02 22:18:04] 2025-06-02 19:46:36,854 | INFO     | sufficient remaining disk space (496585670656 B)
[2025-06-02 22:18:04] 2025-06-02 19:46:36,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:18:04] 2025-06-02 19:46:36,855 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:18:04] 2025-06-02 19:46:36,855 | INFO     | update_server=False
[2025-06-02 22:18:04] 2025-06-02 19:46:36,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:18:04] 2025-06-02 19:46:36,860 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:18:04] 2025-06-02 19:46:36,860 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:18:04] 2025-06-02 19:46:36,861 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:18:04] 2025-06-02 19:46:36,861 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:18:04] 2025-06-02 19:46:36,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:18:04] 2025-06-02 19:46:36,871 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:18:04] 2025-06-02 19:46:36,871 | INFO     | aborting loop
[2025-06-02 22:18:04] 2025-06-02 19:46:36,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:18:04] 2025-06-02 19:46:37,161 | INFO     | all data control threads have been joined
[2025-06-02 22:18:04] 2025-06-02 19:46:37,766 | INFO     | all job control threads have been joined
[2025-06-02 22:18:04] 2025-06-02 19:46:37,864 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:37,877 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,167 | INFO     | [data] control thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,177 | INFO     | all payload control threads have been joined
[2025-06-02 22:18:04] 2025-06-02 19:46:38,480 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,559 | INFO     | [job] validate thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:18:04] 2025-06-02 19:46:38,772 | INFO     | [job] control thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,891 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,913 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:38,927 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:39,154 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:39,169 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:39,183 | INFO     | [payload] control thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:39,253 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:39,776 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:40,876 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:18:04] 2025-06-02 19:46:41,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626049455936)>', '<ExcThread(monitor, started 139625611908864)>']
[2025-06-02 22:18:04] 2025-06-02 19:46:41,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:18:04] 2025-06-02 19:46:41,891 | INFO     | [monitor] control thread has ended
[2025-06-02 22:18:04] 2025-06-02 19:46:46,617 | INFO     | all workflow threads have been joined
[2025-06-02 22:18:04] 2025-06-02 19:46:46,617 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:18:04] 2025-06-02 19:46:46,617 | INFO     | traces error code: 0
[2025-06-02 22:18:04] 2025-06-02 19:46:46,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:18:04] 2025-06-02 19:46:47,044 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:18:04] 2025-06-02 19:46:47,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:18:04] 2025-06-02 19:46:47,229 [wrapper] pilotpid: 5805
[2025-06-02 22:18:04] 2025-06-02 19:46:47,336 [wrapper] Pilot exit status: 0
[2025-06-02 22:18:04] 2025-06-02 19:46:47,780 [wrapper] pandaids: 6677377607
[2025-06-02 22:18:04] 2025-06-02 19:46:48,720 [wrapper] cleanup supervisor_pilot 16784 5806
[2025-06-02 22:18:04] 2025-06-02 19:46:48,834 [wrapper] Test setup, not cleaning
[2025-06-02 22:18:04] 2025-06-02 19:46:48,932 [wrapper] apfmon messages muted
[2025-06-02 22:18:04] 2025-06-02 19:46:49,039 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:18:04] 2025-06-02 19:46:49,148 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:18:04]  *** Error codes and diagnostics ***
[2025-06-02 22:18:04]     "exeErrorCode": 0,
[2025-06-02 22:18:04]     "exeErrorDiag": "",
[2025-06-02 22:18:04]     "pilotErrorCode": 0,
[2025-06-02 22:18:04]     "pilotErrorDiag": "",
[2025-06-02 22:18:04]  *** Listing of results directory ***
[2025-06-02 22:18:04] total 389740
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:18:04] -rwx------. 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc       100 Jun  2 17:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:18:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 17:59 run_atlas
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc       105 Jun  2 17:59 job.xml
[2025-06-02 22:18:04] -rw-r--r--. 2 boinc boinc 215221897 Jun  2 17:59 EVNT.45006593._000028.pool.root.1
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc      6393 Jun  2 17:59 init_data.xml
[2025-06-02 22:18:04] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:59 start_atlas.sh
[2025-06-02 22:18:04] drwxrwx--x. 2 boinc boinc        68 Jun  2 17:59 shared
[2025-06-02 22:18:04] -rw-r--r--. 2 boinc boinc    508872 Jun  2 17:59 input.tar.gz
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc         0 Jun  2 17:59 boinc_lockfile
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc      2518 Jun  2 18:00 pandaJob.out
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc    988242 Jun  2 18:03 agis_schedconf.cvmfs.json
[2025-06-02 22:18:04] drwx------. 4 boinc boinc      4096 Jun  2 18:03 pilot3
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc 177025880 Jun  2 21:43 HITS.45006595._000679.pool.root.1
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc       531 Jun  2 21:44 boinc_task_state.xml
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc      1012 Jun  2 21:45 memory_monitor_summary.json
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc   1603667 Jun  2 21:45 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc    366418 Jun  2 21:45 log.45006595._000679.job.log.tgz.1
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc        95 Jun  2 21:45 pilot_heartbeat.json
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc      7680 Jun  2 21:46 heartbeat.json
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc      4540 Jun  2 21:46 pilotlog.txt
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc   1144700 Jun  2 21:46 log.45006595._000679.job.log.1
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc       357 Jun  2 21:46 output.list
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc       620 Jun  2 21:46 runtime_log
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc   1525760 Jun  2 21:46 result.tar.gz
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc      8673 Jun  2 21:46 runtime_log.err
[2025-06-02 22:18:04] -rw-------. 1 boinc boinc       657 Jun  2 21:46 NmbLDmoaMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmV0eKDmIbud7m.diag
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:18 boinc_mmap_file
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:18 wrapper_checkpoint.txt
[2025-06-02 22:18:04] -rw-r--r--. 1 boinc boinc     20519 Jun  2 22:18 stderr.txt
[2025-06-02 22:18:04] HITS file was successfully produced:
[2025-06-02 22:18:05] -rw-------. 1 boinc boinc 177025880 Jun  2 21:43 shared/HITS.pool.root.1
[2025-06-02 22:18:05]  *** Contents of shared directory: ***
[2025-06-02 22:18:05] total 385068
[2025-06-02 22:18:05] -rw-r--r--. 2 boinc boinc 215221897 Jun  2 17:59 ATLAS.root_0
[2025-06-02 22:18:05] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:59 start_atlas.sh
[2025-06-02 22:18:05] -rw-r--r--. 2 boinc boinc    508872 Jun  2 17:59 input.tar.gz
[2025-06-02 22:18:05] -rw-------. 1 boinc boinc 177025880 Jun  2 21:43 HITS.pool.root.1
[2025-06-02 22:18:05] -rw-------. 1 boinc boinc   1525760 Jun  2 21:46 result.tar.gz
22:18:06 (2124): run_atlas exited; CPU time 47832.173209
22:18:06 (2124): called boinc_finish(0)

</stderr_txt>
]]>

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