Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:45:41 (32094): wrapper (7.7.26015): starting
01:45:41 (32094): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 01:45:41] Arguments: --nthreads 8
[2025-06-03 01:45:41] Threads: 8
[2025-06-03 01:45:41] Checking for CVMFS
[2025-06-03 01:45:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 01:45:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 01:45:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 01:45:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 01:45:42] 2.11.2.0 1304 31002 89748 146722 3 155 20307120 25165824 4053 130560 0 16393571 99.826 17248485 1956 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 01:45:42] CVMFS is ok
[2025-06-03 01:45:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:45:42] Checking for apptainer binary...
[2025-06-03 01:45:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 01:45:42] Running /usr/bin/apptainer --version
[2025-06-03 01:45:42] apptainer version 1.3.2-1.el7
[2025-06-03 01:45:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:45:43] cg-vwn245.simple-grid.lan
[2025-06-03 01:45:43] apptainer works
[2025-06-03 01:45:43] Set ATHENA_PROC_NUMBER=8
[2025-06-03 01:45:43] Set ATHENA_CORE_NUMBER=8
[2025-06-03 01:45:43] Starting ATLAS job with PandaID=6677377792
[2025-06-03 01:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 05:30:10]  *** The last 200 lines of the pilot log: ***
[2025-06-03 05:30:10] 2025-06-03 03:28:48,713 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6677377792/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,714 | INFO     | extracted standard info from prmon json
[2025-06-03 05:30:10] 2025-06-03 03:28:48,714 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 05:30:10] 2025-06-03 03:28:48,714 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 05:30:10] 2025-06-03 03:28:48,715 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 05:30:10] 2025-06-03 03:28:48,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 05:30:10] 2025-06-03 03:28:48,720 | INFO     | fitting pss+swap vs Time
[2025-06-03 05:30:10] 2025-06-03 03:28:48,720 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,722 | INFO     | sum of deviations: 22486185268.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,722 | INFO     | mean x: 1748914643.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,722 | INFO     | mean y: 2463139.7649769587
[2025-06-03 05:30:10] 2025-06-03 03:28:48,722 | INFO     | -- intersect: -12409371929.072632
[2025-06-03 05:30:10] 2025-06-03 03:28:48,722 | INFO     | intersect: -12409371929.072632
[2025-06-03 05:30:10] 2025-06-03 03:28:48,723 | INFO     | chi2: 2.412998820757292
[2025-06-03 05:30:10] 2025-06-03 03:28:48,723 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,725 | INFO     | sum of deviations: 35839739493.000015
[2025-06-03 05:30:10] 2025-06-03 03:28:48,725 | INFO     | mean x: 1748914490.5
[2025-06-03 05:30:10] 2025-06-03 03:28:48,725 | INFO     | mean y: 2472465.8773584906
[2025-06-03 05:30:10] 2025-06-03 03:28:48,725 | INFO     | -- intersect: -21213213419.333717
[2025-06-03 05:30:10] 2025-06-03 03:28:48,726 | INFO     | intersect: -21213213419.333717
[2025-06-03 05:30:10] 2025-06-03 03:28:48,726 | INFO     | chi2: 1.6438399722752528
[2025-06-03 05:30:10] 2025-06-03 03:28:48,726 | INFO     | current chi2=1.6438399722752528 (change=31.875641291886225 %)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,726 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,728 | INFO     | sum of deviations: 34828411891.999985
[2025-06-03 05:30:10] 2025-06-03 03:28:48,728 | INFO     | mean x: 1748914338.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,728 | INFO     | mean y: 2471710.2801932367
[2025-06-03 05:30:10] 2025-06-03 03:28:48,728 | INFO     | -- intersect: -22144935222.15261
[2025-06-03 05:30:10] 2025-06-03 03:28:48,728 | INFO     | intersect: -22144935222.15261
[2025-06-03 05:30:10] 2025-06-03 03:28:48,729 | INFO     | chi2: 1.6448164536837062
[2025-06-03 05:30:10] 2025-06-03 03:28:48,729 | INFO     | current chi2=1.6448164536837062 (change=-0.05940246160956015 %)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,729 | INFO     | right removable region: 206
[2025-06-03 05:30:10] 2025-06-03 03:28:48,730 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,731 | INFO     | sum of deviations: -13948157825.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,731 | INFO     | mean x: 1748914795.5
[2025-06-03 05:30:10] 2025-06-03 03:28:48,732 | INFO     | mean y: 2488866.6603773586
[2025-06-03 05:30:10] 2025-06-03 03:28:48,732 | INFO     | -- intersect: 8259239358.86023
[2025-06-03 05:30:10] 2025-06-03 03:28:48,732 | INFO     | intersect: 8259239358.86023
[2025-06-03 05:30:10] 2025-06-03 03:28:48,732 | INFO     | chi2: 0.8493440615963885
[2025-06-03 05:30:10] 2025-06-03 03:28:48,732 | INFO     | current chi2=0.8493440615963885 (change=64.80130639558988 %)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,733 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,734 | INFO     | sum of deviations: -12563622952.000002
[2025-06-03 05:30:10] 2025-06-03 03:28:48,735 | INFO     | mean x: 1748914948.0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,735 | INFO     | mean y: 2487792.0821256037
[2025-06-03 05:30:10] 2025-06-03 03:28:48,735 | INFO     | -- intersect: 7991705559.955745
[2025-06-03 05:30:10] 2025-06-03 03:28:48,735 | INFO     | intersect: 7991705559.955745
[2025-06-03 05:30:10] 2025-06-03 03:28:48,735 | INFO     | chi2: 0.8328405355475393
[2025-06-03 05:30:10] 2025-06-03 03:28:48,736 | INFO     | current chi2=0.8328405355475393 (change=1.9430907679309508 %)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,736 | INFO     | left removable region: 20
[2025-06-03 05:30:10] 2025-06-03 03:28:48,736 | INFO     | sum of square deviations: 1995283922.5
[2025-06-03 05:30:10] 2025-06-03 03:28:48,738 | INFO     | sum of deviations: 4949983317.5
[2025-06-03 05:30:10] 2025-06-03 03:28:48,738 | INFO     | mean x: 1748914917.5
[2025-06-03 05:30:10] 2025-06-03 03:28:48,738 | INFO     | mean y: 2494434.1129032257
[2025-06-03 05:30:10] 2025-06-03 03:28:48,738 | INFO     | -- intersect: -4336286411.925757
[2025-06-03 05:30:10] 2025-06-03 03:28:48,738 | INFO     | intersect: -4336286411.925757
[2025-06-03 05:30:10] 2025-06-03 03:28:48,738 | INFO     | chi2: 0.001666031203422094
[2025-06-03 05:30:10] 2025-06-03 03:28:48,739 | INFO     | -- intersect: -4336286411.925757
[2025-06-03 05:30:10] 2025-06-03 03:28:48,739 | INFO     | current memory leak: 2.48 B/s (using 186 data points, chi2=0.00)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | ..............................
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | . Timing measurements:
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | . get job = 0 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | . initial setup = 2 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | . payload setup = 21 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | . stage-in = 0 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,740 | INFO     | . payload execution = 13209 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,741 | INFO     | . stage-out = 3 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,741 | INFO     | . log creation = 1 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,741 | INFO     | ..............................
[2025-06-03 05:30:10] 2025-06-03 03:28:48,888 | INFO     | 
[2025-06-03 05:30:10] 2025-06-03 03:28:48,888 | INFO     | job summary report
[2025-06-03 05:30:10] 2025-06-03 03:28:48,888 | INFO     | --------------------------------------------------
[2025-06-03 05:30:10] 2025-06-03 03:28:48,888 | INFO     | PanDA job id: 6677377792
[2025-06-03 05:30:10] 2025-06-03 03:28:48,888 | INFO     | task id: 45006595
[2025-06-03 05:30:10] 2025-06-03 03:28:48,888 | INFO     | errors: (none)
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | pilot state: finished 
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | transexitcode: 0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | exeerrorcode: 0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | exeerrordiag: 
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | exitcode: 0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | exitmsg: OK
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | cpuconsumptiontime: 50014 s
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | nevents: 400
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | neventsw: 0
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | pid: 17218
[2025-06-03 05:30:10] 2025-06-03 03:28:48,889 | INFO     | pgrp: 17218
[2025-06-03 05:30:10] 2025-06-03 03:28:48,890 | INFO     | corecount: 8
[2025-06-03 05:30:10] 2025-06-03 03:28:48,890 | INFO     | event service: False
[2025-06-03 05:30:10] 2025-06-03 03:28:48,890 | INFO     | sizes: {0: 2405002, 1: 2405201, 12: 2405201, 13: 2405435, 23: 2405491, 13234: 2435229, 13239: 2444172, 13241: 2444228, 13322: 2444398}
[2025-06-03 05:30:10] 2025-06-03 03:28:48,890 | INFO     | --------------------------------------------------
[2025-06-03 05:30:10] 2025-06-03 03:28:48,890 | INFO     | 
[2025-06-03 05:30:10] 2025-06-03 03:28:48,890 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-06-03 05:30:10] 2025-06-03 03:28:49,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 05:30:10] 2025-06-03 03:28:49,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 05:30:10] 2025-06-03 03:28:49,516 | INFO     | job 6677377792 has completed (purged errors)
[2025-06-03 05:30:10] 2025-06-03 03:28:49,516 | INFO     | overall cleanup function is called
[2025-06-03 05:30:10] 2025-06-03 03:28:50,525 | INFO     | --- collectZombieJob: --- 10, [17218]
[2025-06-03 05:30:10] 2025-06-03 03:28:50,525 | INFO     | zombie collector waiting for pid 17218
[2025-06-03 05:30:10] 2025-06-03 03:28:50,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 05:30:10] 2025-06-03 03:28:50,525 | INFO     | collected zombie processes
[2025-06-03 05:30:10] 2025-06-03 03:28:50,525 | INFO     | will attempt to kill all subprocesses of pid=17218
[2025-06-03 05:30:10] 2025-06-03 03:28:50,645 | INFO     | process IDs to be killed: [17218] (in reverse order)
[2025-06-03 05:30:10] 2025-06-03 03:28:51,270 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 05:30:10] 2025-06-03 03:28:51,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 05:30:10] 2025-06-03 03:28:51,274 | INFO     | did not find any defunct processes belonging to 17218
[2025-06-03 05:30:10] 2025-06-03 03:28:51,277 | INFO     | did not find any defunct processes belonging to 17218
[2025-06-03 05:30:10] 2025-06-03 03:28:51,277 | INFO     | ready for new job
[2025-06-03 05:30:10] 2025-06-03 03:28:51,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 05:30:10] 2025-06-03 03:28:51,279 | INFO     | **************************************
[2025-06-03 05:30:10] 2025-06-03 03:28:51,280 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 05:30:10] 2025-06-03 03:28:51,280 | INFO     | **************************************
[2025-06-03 05:30:10] 2025-06-03 03:28:51,280 | INFO     | 
[2025-06-03 05:30:10] 2025-06-03 03:28:51,280 | INFO     | pilot is running in a VM
[2025-06-03 05:30:10] 2025-06-03 03:28:51,281 | INFO     | architecture information:
[2025-06-03 05:30:10] 2025-06-03 03:28:51,298 | INFO     | executing command: cat /etc/os-release
[2025-06-03 05:30:10] 2025-06-03 03:28:51,513 | INFO     | cat /etc/os-release:
[2025-06-03 05:30:10] NAME="CentOS Linux"
[2025-06-03 05:30:10] VERSION="7 (Core)"
[2025-06-03 05:30:10] ID="centos"
[2025-06-03 05:30:10] ID_LIKE="rhel fedora"
[2025-06-03 05:30:10] VERSION_ID="7"
[2025-06-03 05:30:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 05:30:10] ANSI_COLOR="0;31"
[2025-06-03 05:30:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 05:30:10] HOME_URL="https://www.centos.org/"
[2025-06-03 05:30:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 05:30:10] 
[2025-06-03 05:30:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 05:30:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 05:30:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 05:30:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 05:30:10] 
[2025-06-03 05:30:10] 2025-06-03 03:28:51,514 | INFO     | **************************************
[2025-06-03 05:30:10] 2025-06-03 03:28:52,017 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-06-03 05:30:10] 2025-06-03 03:28:52,322 | INFO     | sufficient remaining disk space (496822648832 B)
[2025-06-03 05:30:10] 2025-06-03 03:28:52,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 05:30:10] 2025-06-03 03:28:52,322 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 05:30:10] 2025-06-03 03:28:52,322 | INFO     | update_server=False
[2025-06-03 05:30:10] 2025-06-03 03:28:52,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 05:30:10] 2025-06-03 03:28:52,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:30:10] 2025-06-03 03:28:52,323 | INFO     | aborting loop
[2025-06-03 05:30:10] 2025-06-03 03:28:52,533 | INFO     | all payload control threads have been joined
[2025-06-03 05:30:10] 2025-06-03 03:28:52,691 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 05:30:10] 2025-06-03 03:28:52,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 05:30:10] 2025-06-03 03:28:52,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 05:30:10] 2025-06-03 03:28:52,753 | INFO     | all job control threads have been joined
[2025-06-03 05:30:10] 2025-06-03 03:28:53,121 | INFO     | all data control threads have been joined
[2025-06-03 05:30:10] 2025-06-03 03:28:53,329 | INFO     | [job] retrieve thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,330 | INFO     | [job] job monitor thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,340 | INFO     | [payload] failed_post thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,444 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,539 | INFO     | [payload] control thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,737 | INFO     | [payload] validate_post thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 05:30:10] 2025-06-03 03:28:53,759 | INFO     | [job] control thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,899 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:53,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 05:30:10] 2025-06-03 03:28:53,924 | INFO     | [job] validate thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:54,127 | INFO     | [data] control thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:54,323 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:54,332 | INFO     | [data] copytool_in thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:54,364 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:54,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 05:30:10] 2025-06-03 03:28:54,909 | INFO     | [job] queue monitor thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:55,760 | INFO     | [data] copytool_out thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:58,440 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 05:30:10] 2025-06-03 03:28:59,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190592202560)>', '<ExcThread(monitor, started 140189880022784)>']
[2025-06-03 05:30:10] 2025-06-03 03:28:59,733 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 05:30:10] 2025-06-03 03:28:59,733 | INFO     | [monitor] control thread has ended
[2025-06-03 05:30:10] 2025-06-03 03:29:04,221 | INFO     | all workflow threads have been joined
[2025-06-03 05:30:10] 2025-06-03 03:29:04,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 05:30:10] 2025-06-03 03:29:04,222 | INFO     | traces error code: 0
[2025-06-03 05:30:10] 2025-06-03 03:29:04,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 05:30:10] 2025-06-03 03:29:04,603 [wrapper] ==== pilot stdout END ====
[2025-06-03 05:30:10] 2025-06-03 03:29:04,701 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 05:30:10] 2025-06-03 03:29:04,807 [wrapper] pilotpid: 3398
[2025-06-03 05:30:10] 2025-06-03 03:29:04,939 [wrapper] Pilot exit status: 0
[2025-06-03 05:30:10] 2025-06-03 03:29:05,345 [wrapper] pandaids: 6677377792
[2025-06-03 05:30:10] 2025-06-03 03:29:06,158 [wrapper] cleanup supervisor_pilot 15942 3399
[2025-06-03 05:30:10] 2025-06-03 03:29:06,213 [wrapper] Test setup, not cleaning
[2025-06-03 05:30:10] 2025-06-03 03:29:06,333 [wrapper] apfmon messages muted
[2025-06-03 05:30:10] 2025-06-03 03:29:06,451 [wrapper] ==== wrapper stdout END ====
[2025-06-03 05:30:10] 2025-06-03 03:29:06,569 [wrapper] ==== wrapper stderr END ====
[2025-06-03 05:30:10]  *** Error codes and diagnostics ***
[2025-06-03 05:30:10]     "exeErrorCode": 0,
[2025-06-03 05:30:10]     "exeErrorDiag": "",
[2025-06-03 05:30:10]     "pilotErrorCode": 0,
[2025-06-03 05:30:10]     "pilotErrorDiag": "",
[2025-06-03 05:30:10]  *** Listing of results directory ***
[2025-06-03 05:30:10] total 397060
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 05:30:10] -rwx------. 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc       100 Jun  3 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 05:30:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 01:45 run_atlas
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc       105 Jun  3 01:45 job.xml
[2025-06-03 05:30:10] -rw-r--r--. 2 boinc boinc 217284703 Jun  3 01:45 EVNT.45006593._000035.pool.root.1
[2025-06-03 05:30:10] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:45 start_atlas.sh
[2025-06-03 05:30:10] drwxrwx--x. 2 boinc boinc        68 Jun  3 01:45 shared
[2025-06-03 05:30:10] -rw-r--r--. 2 boinc boinc    508873 Jun  3 01:45 input.tar.gz
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc      6393 Jun  3 01:45 init_data.xml
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc         0 Jun  3 01:45 boinc_lockfile
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc      2519 Jun  3 01:45 pandaJob.out
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc    988091 Jun  3 01:46 agis_schedconf.cvmfs.json
[2025-06-03 05:30:10] drwx------. 4 boinc boinc      4096 Jun  3 01:46 pilot3
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc 182395308 Jun  3 05:26 HITS.45006595._000864.pool.root.1
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc       531 Jun  3 05:26 boinc_task_state.xml
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc      1015 Jun  3 05:27 memory_monitor_summary.json
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc   1603667 Jun  3 05:27 agis_ddmendpoints.agis.ALL.json
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc    378318 Jun  3 05:27 log.45006595._000864.job.log.tgz.1
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc        95 Jun  3 05:28 pilot_heartbeat.json
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc      7678 Jun  3 05:28 heartbeat.json
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc      4417 Jun  3 05:29 pilotlog.txt
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc   1163654 Jun  3 05:29 log.45006595._000864.job.log.1
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc       357 Jun  3 05:29 output.list
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc       620 Jun  3 05:29 runtime_log
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc   1556480 Jun  3 05:29 result.tar.gz
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc      8673 Jun  3 05:29 runtime_log.err
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc       656 Jun  3 05:29 c9OMDmxaMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKZVKDmW8WiRn.diag
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc      8192 Jun  3 05:30 boinc_mmap_file
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc        28 Jun  3 05:30 wrapper_checkpoint.txt
[2025-06-03 05:30:10] -rw-r--r--. 1 boinc boinc     20506 Jun  3 05:30 stderr.txt
[2025-06-03 05:30:10] HITS file was successfully produced:
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc 182395308 Jun  3 05:26 shared/HITS.pool.root.1
[2025-06-03 05:30:10]  *** Contents of shared directory: ***
[2025-06-03 05:30:10] total 392356
[2025-06-03 05:30:10] -rw-r--r--. 2 boinc boinc 217284703 Jun  3 01:45 ATLAS.root_0
[2025-06-03 05:30:10] -rw-r--r--. 2 boinc boinc     15093 Jun  3 01:45 start_atlas.sh
[2025-06-03 05:30:10] -rw-r--r--. 2 boinc boinc    508873 Jun  3 01:45 input.tar.gz
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc 182395308 Jun  3 05:26 HITS.pool.root.1
[2025-06-03 05:30:10] -rw-------. 1 boinc boinc   1556480 Jun  3 05:29 result.tar.gz
05:30:12 (32094): run_atlas exited; CPU time 50184.171372
05:30:12 (32094): called boinc_finish(0)

</stderr_txt>
]]>

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