Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:59:15 (31358): wrapper (7.7.26015): starting
17:59:15 (31358): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 17:59:15] Arguments: --nthreads 8
[2025-06-02 17:59:15] Threads: 8
[2025-06-02 17:59:15] Checking for CVMFS
[2025-06-02 17:59:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 17:59:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 17:59:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 17:59:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 17:59:18] 2.11.2.0 31576 30539 97500 146710 3 16 15772878 25165825 4632 130560 0 15390633 99.833 17123547 1962 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 17:59:18] CVMFS is ok
[2025-06-02 17:59:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 17:59:18] Checking for apptainer binary...
[2025-06-02 17:59:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 17:59:18] Running /usr/bin/apptainer --version
[2025-06-02 17:59:18] apptainer version 1.3.2-1.el7
[2025-06-02 17:59:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 17:59:24] cg-vwn347.simple-grid.lan
[2025-06-02 17:59:24] apptainer works
[2025-06-02 17:59:24] Set ATHENA_PROC_NUMBER=8
[2025-06-02 17:59:24] Set ATHENA_CORE_NUMBER=8
[2025-06-02 17:59:24] Starting ATLAS job with PandaID=6677376910
[2025-06-02 17:59:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:22:58]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:22:58] 2025-06-02 19:42:19,760 | INFO     | extracted standard info from prmon json
[2025-06-02 22:22:58] 2025-06-02 19:42:19,760 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:22:58] 2025-06-02 19:42:19,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:22:58] 2025-06-02 19:42:19,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:22:58] 2025-06-02 19:42:19,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:22:58] 2025-06-02 19:42:19,766 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:22:58] 2025-06-02 19:42:19,767 | INFO     | sum of square deviations: 2710627567.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,768 | INFO     | sum of deviations: 96863630082.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,769 | INFO     | mean x: 1748886955.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,769 | INFO     | mean y: 2393275.9417475727
[2025-06-02 22:22:58] 2025-06-02 19:42:19,769 | INFO     | -- intersect: -62493665254.52888
[2025-06-02 22:22:58] 2025-06-02 19:42:19,769 | INFO     | intersect: -62493665254.52888
[2025-06-02 22:22:58] 2025-06-02 19:42:19,769 | INFO     | chi2: 8.031853351950339
[2025-06-02 22:22:58] 2025-06-02 19:42:19,770 | INFO     | sum of square deviations: 2518000700.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,771 | INFO     | sum of deviations: 107623044749.00002
[2025-06-02 22:22:58] 2025-06-02 19:42:19,771 | INFO     | mean x: 1748886803.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,772 | INFO     | mean y: 2401582.4129353235
[2025-06-02 22:22:58] 2025-06-02 19:42:19,772 | INFO     | -- intersect: -74747586636.49605
[2025-06-02 22:22:58] 2025-06-02 19:42:19,772 | INFO     | intersect: -74747586636.49605
[2025-06-02 22:22:58] 2025-06-02 19:42:19,772 | INFO     | chi2: 7.347175591215824
[2025-06-02 22:22:58] 2025-06-02 19:42:19,772 | INFO     | current chi2=7.347175591215824 (change=8.524530151789412 %)
[2025-06-02 22:22:58] 2025-06-02 19:42:19,772 | INFO     | right removable region: 200
[2025-06-02 22:22:58] 2025-06-02 19:42:19,773 | INFO     | sum of square deviations: 2518000700.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,774 | INFO     | sum of deviations: 25842774318.000008
[2025-06-02 22:22:58] 2025-06-02 19:42:19,774 | INFO     | mean x: 1748887108.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,784 | INFO     | mean y: 2449464.432835821
[2025-06-02 22:22:58] 2025-06-02 19:42:19,784 | INFO     | -- intersect: -17946749215.179806
[2025-06-02 22:22:58] 2025-06-02 19:42:19,784 | INFO     | intersect: -17946749215.179806
[2025-06-02 22:22:58] 2025-06-02 19:42:19,785 | INFO     | chi2: 2.902201987434719
[2025-06-02 22:22:58] 2025-06-02 19:42:19,785 | INFO     | current chi2=2.902201987434719 (change=63.86634740125092 %)
[2025-06-02 22:22:58] 2025-06-02 19:42:19,785 | INFO     | sum of square deviations: 2334722845.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,787 | INFO     | sum of deviations: -17782867955.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,787 | INFO     | mean x: 1748887260.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,787 | INFO     | mean y: 2485591.586734694
[2025-06-02 22:22:58] 2025-06-02 19:42:19,787 | INFO     | -- intersect: 13323223549.469538
[2025-06-02 22:22:58] 2025-06-02 19:42:19,787 | INFO     | intersect: 13323223549.469538
[2025-06-02 22:22:58] 2025-06-02 19:42:19,788 | INFO     | chi2: 0.9125514921264759
[2025-06-02 22:22:58] 2025-06-02 19:42:19,788 | INFO     | current chi2=0.9125514921264759 (change=68.55658234411561 %)
[2025-06-02 22:22:58] 2025-06-02 19:42:19,788 | INFO     | sum of square deviations: 2160561440.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,790 | INFO     | sum of deviations: -18586434101.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,790 | INFO     | mean x: 1748887413.0
[2025-06-02 22:22:58] 2025-06-02 19:42:19,790 | INFO     | mean y: 2486218.052356021
[2025-06-02 22:22:58] 2025-06-02 19:42:19,790 | INFO     | -- intersect: 15047455571.848133
[2025-06-02 22:22:58] 2025-06-02 19:42:19,790 | INFO     | intersect: 15047455571.848133
[2025-06-02 22:22:58] 2025-06-02 19:42:19,791 | INFO     | chi2: 0.8755743747139972
[2025-06-02 22:22:58] 2025-06-02 19:42:19,791 | INFO     | current chi2=0.8755743747139972 (change=4.052058183184011 %)
[2025-06-02 22:22:58] 2025-06-02 19:42:19,791 | INFO     | left removable region: 30
[2025-06-02 22:22:58] 2025-06-02 19:42:19,791 | INFO     | sum of square deviations: 1523386702.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,792 | INFO     | sum of deviations: 5046514963.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,792 | INFO     | mean x: 1748887687.5
[2025-06-02 22:22:58] 2025-06-02 19:42:19,793 | INFO     | mean y: 2486730.276470588
[2025-06-02 22:22:58] 2025-06-02 19:42:19,793 | INFO     | -- intersect: -5791044137.4709215
[2025-06-02 22:22:58] 2025-06-02 19:42:19,793 | INFO     | intersect: -5791044137.4709215
[2025-06-02 22:22:58] 2025-06-02 19:42:19,793 | INFO     | chi2: 0.00041203003454119415
[2025-06-02 22:22:58] 2025-06-02 19:42:19,793 | INFO     | -- intersect: -5791044137.4709215
[2025-06-02 22:22:58] 2025-06-02 19:42:19,793 | INFO     | current memory leak: 3.31 B/s (using 170 data points, chi2=0.00)
[2025-06-02 22:22:58] 2025-06-02 19:42:19,794 | INFO     | ..............................
[2025-06-02 22:22:58] 2025-06-02 19:42:19,794 | INFO     | . Timing measurements:
[2025-06-02 22:22:58] 2025-06-02 19:42:19,794 | INFO     | . get job = 0 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,794 | INFO     | . initial setup = 9 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,795 | INFO     | . payload setup = 194 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,795 | INFO     | . stage-in = 0 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,795 | INFO     | . payload execution = 12700 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,795 | INFO     | . stage-out = 8 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,795 | INFO     | . log creation = 1 s
[2025-06-02 22:22:58] 2025-06-02 19:42:19,795 | INFO     | ..............................
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | 
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | job summary report
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | --------------------------------------------------
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | PanDA job id: 6677376910
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | task id: 45006595
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | errors: (none)
[2025-06-02 22:22:58] 2025-06-02 19:42:20,033 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | pilot state: finished 
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | transexitcode: 0
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | exeerrorcode: 0
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | exeerrordiag: 
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | exitcode: 0
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | exitmsg: OK
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | cpuconsumptiontime: 46766 s
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | nevents: 400
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | neventsw: 0
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | pid: 15550
[2025-06-02 22:22:58] 2025-06-02 19:42:20,034 | INFO     | pgrp: 15550
[2025-06-02 22:22:58] 2025-06-02 19:42:20,035 | INFO     | corecount: 8
[2025-06-02 22:22:58] 2025-06-02 19:42:20,035 | INFO     | event service: False
[2025-06-02 22:22:58] 2025-06-02 19:42:20,035 | INFO     | sizes: {0: 2404344, 1: 2405030, 2: 2405229, 13: 2405229, 23: 2405285, 34: 2405313, 45: 2405469, 56: 2405497, 66: 2405525, 77: 2405553, 85: 2405815, 88: 2406123, 12
[2025-06-02 22:22:58] 2025-06-02 19:42:20,035 | INFO     | --------------------------------------------------
[2025-06-02 22:22:58] 2025-06-02 19:42:20,035 | INFO     | 
[2025-06-02 22:22:58] 2025-06-02 19:42:20,035 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-02 22:22:58] 2025-06-02 19:42:20,655 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:22:58] 2025-06-02 19:42:20,657 | INFO     | job 6677376910 has completed (purged errors)
[2025-06-02 22:22:58] 2025-06-02 19:42:20,658 | INFO     | overall cleanup function is called
[2025-06-02 22:22:58] 2025-06-02 19:42:21,666 | INFO     | --- collectZombieJob: --- 10, [15550]
[2025-06-02 22:22:58] 2025-06-02 19:42:21,667 | INFO     | zombie collector waiting for pid 15550
[2025-06-02 22:22:58] 2025-06-02 19:42:21,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:22:58] 2025-06-02 19:42:21,667 | INFO     | collected zombie processes
[2025-06-02 22:22:58] 2025-06-02 19:42:21,667 | INFO     | will attempt to kill all subprocesses of pid=15550
[2025-06-02 22:22:58] 2025-06-02 19:42:21,774 | INFO     | process IDs to be killed: [15550] (in reverse order)
[2025-06-02 22:22:58] 2025-06-02 19:42:22,275 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:22:58] 2025-06-02 19:42:22,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:22:58] 2025-06-02 19:42:22,279 | INFO     | did not find any defunct processes belonging to 15550
[2025-06-02 22:22:58] 2025-06-02 19:42:22,282 | INFO     | did not find any defunct processes belonging to 15550
[2025-06-02 22:22:58] 2025-06-02 19:42:22,283 | INFO     | ready for new job
[2025-06-02 22:22:58] 2025-06-02 19:42:22,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:22:58] 2025-06-02 19:42:22,285 | INFO     | **************************************
[2025-06-02 22:22:58] 2025-06-02 19:42:22,285 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:22:58] 2025-06-02 19:42:22,285 | INFO     | **************************************
[2025-06-02 22:22:58] 2025-06-02 19:42:22,285 | INFO     | 
[2025-06-02 22:22:58] 2025-06-02 19:42:22,286 | INFO     | pilot is running in a VM
[2025-06-02 22:22:58] 2025-06-02 19:42:22,286 | INFO     | architecture information:
[2025-06-02 22:22:58] 2025-06-02 19:42:22,300 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:22:58] 2025-06-02 19:42:22,664 | INFO     | cat /etc/os-release:
[2025-06-02 22:22:58] NAME="CentOS Linux"
[2025-06-02 22:22:58] VERSION="7 (Core)"
[2025-06-02 22:22:58] ID="centos"
[2025-06-02 22:22:58] ID_LIKE="rhel fedora"
[2025-06-02 22:22:58] VERSION_ID="7"
[2025-06-02 22:22:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:22:58] ANSI_COLOR="0;31"
[2025-06-02 22:22:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:22:58] HOME_URL="https://www.centos.org/"
[2025-06-02 22:22:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:22:58] 
[2025-06-02 22:22:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:22:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:22:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:22:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:22:58] 
[2025-06-02 22:22:58] 2025-06-02 19:42:22,664 | INFO     | **************************************
[2025-06-02 22:22:58] 2025-06-02 19:42:23,168 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-02 22:22:58] 2025-06-02 19:42:23,416 | INFO     | sufficient remaining disk space (496538484736 B)
[2025-06-02 22:22:58] 2025-06-02 19:42:23,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:22:58] 2025-06-02 19:42:23,416 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:22:58] 2025-06-02 19:42:23,416 | INFO     | update_server=False
[2025-06-02 22:22:58] 2025-06-02 19:42:23,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:22:58] 2025-06-02 19:42:23,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:22:58] 2025-06-02 19:42:23,417 | INFO     | aborting loop
[2025-06-02 22:22:58] 2025-06-02 19:42:23,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:22:58] 2025-06-02 19:42:23,422 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:22:58] 2025-06-02 19:42:23,422 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:22:58] 2025-06-02 19:42:23,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:22:58] 2025-06-02 19:42:23,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:22:58] 2025-06-02 19:42:24,285 | INFO     | all data control threads have been joined
[2025-06-02 22:22:58] 2025-06-02 19:42:24,397 | INFO     | all job control threads have been joined
[2025-06-02 22:22:58] 2025-06-02 19:42:24,423 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:24,423 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:24,459 | INFO     | all payload control threads have been joined
[2025-06-02 22:22:58] 2025-06-02 19:42:24,563 | INFO     | [job] validate thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:24,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:24,652 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:24,953 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:22:58] 2025-06-02 19:42:25,166 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,292 | INFO     | [data] control thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,294 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,358 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,404 | INFO     | [job] control thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,425 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,466 | INFO     | [payload] control thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:22:58] 2025-06-02 19:42:25,686 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,686 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:25,959 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:29,680 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:22:58] 2025-06-02 19:42:30,586 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139636600719168)>', '<ExcThread(monitor, started 139636005390080)>']
[2025-06-02 22:22:58] 2025-06-02 19:42:31,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:22:58] 2025-06-02 19:42:31,469 | INFO     | [monitor] control thread has ended
[2025-06-02 22:22:58] 2025-06-02 19:42:35,612 | INFO     | all workflow threads have been joined
[2025-06-02 22:22:58] 2025-06-02 19:42:35,612 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:22:58] 2025-06-02 19:42:35,612 | INFO     | traces error code: 0
[2025-06-02 22:22:58] 2025-06-02 19:42:35,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:22:58] 2025-06-02 19:42:36,000 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:22:58] 2025-06-02 19:42:36,059 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:22:58] 2025-06-02 19:42:36,169 [wrapper] pilotpid: 2968
[2025-06-02 22:22:58] 2025-06-02 19:42:36,258 [wrapper] Pilot exit status: 0
[2025-06-02 22:22:58] 2025-06-02 19:42:36,692 [wrapper] pandaids: 6677376910
[2025-06-02 22:22:58] 2025-06-02 19:42:37,600 [wrapper] cleanup supervisor_pilot 18790 2969
[2025-06-02 22:22:58] 2025-06-02 19:42:37,717 [wrapper] Test setup, not cleaning
[2025-06-02 22:22:58] 2025-06-02 19:42:37,805 [wrapper] apfmon messages muted
[2025-06-02 22:22:58] 2025-06-02 19:42:37,872 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:22:58] 2025-06-02 19:42:37,991 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:22:58]  *** Error codes and diagnostics ***
[2025-06-02 22:22:58]     "exeErrorCode": 0,
[2025-06-02 22:22:58]     "exeErrorDiag": "",
[2025-06-02 22:22:58]     "pilotErrorCode": 0,
[2025-06-02 22:22:58]     "pilotErrorDiag": "",
[2025-06-02 22:22:58]  *** Listing of results directory ***
[2025-06-02 22:22:58] total 388652
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:22:58] -rwx------. 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc       100 Jun  2 17:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:22:58] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 17:59 run_atlas
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc       105 Jun  2 17:59 job.xml
[2025-06-02 22:22:58] -rw-r--r--. 2 boinc boinc 216638691 Jun  2 17:59 EVNT.45006593._000025.pool.root.1
[2025-06-02 22:22:58] -rw-r--r--. 2 boinc boinc    508874 Jun  2 17:59 input.tar.gz
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc      6392 Jun  2 17:59 init_data.xml
[2025-06-02 22:22:58] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:59 start_atlas.sh
[2025-06-02 22:22:58] drwxrwx--x. 2 boinc boinc        68 Jun  2 17:59 shared
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc         0 Jun  2 17:59 boinc_lockfile
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc      2519 Jun  2 17:59 pandaJob.out
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc    988242 Jun  2 18:02 agis_schedconf.cvmfs.json
[2025-06-02 22:22:58] drwx------. 4 boinc boinc      4096 Jun  2 18:02 pilot3
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc 174487149 Jun  2 21:39 HITS.45006595._000617.pool.root.1
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc       531 Jun  2 21:39 boinc_task_state.xml
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc      1014 Jun  2 21:40 memory_monitor_summary.json
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc   1603667 Jun  2 21:40 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc    380488 Jun  2 21:40 log.45006595._000617.job.log.tgz.1
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc        95 Jun  2 21:41 pilot_heartbeat.json
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc      7681 Jun  2 21:42 heartbeat.json
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc      4540 Jun  2 21:42 pilotlog.txt
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc   1132621 Jun  2 21:42 log.45006595._000617.job.log.1
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc       357 Jun  2 21:42 output.list
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc       620 Jun  2 21:42 runtime_log
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc   1536000 Jun  2 21:42 result.tar.gz
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc      8673 Jun  2 21:42 runtime_log.err
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc       657 Jun  2 21:42 8mvLDmtaMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmXVKDm6oQ3Yn.diag
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:22 boinc_mmap_file
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:22 wrapper_checkpoint.txt
[2025-06-02 22:22:58] -rw-r--r--. 1 boinc boinc     20509 Jun  2 22:22 stderr.txt
[2025-06-02 22:22:58] HITS file was successfully produced:
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc 174487149 Jun  2 21:39 shared/HITS.pool.root.1
[2025-06-02 22:22:58]  *** Contents of shared directory: ***
[2025-06-02 22:22:58] total 383980
[2025-06-02 22:22:58] -rw-r--r--. 2 boinc boinc 216638691 Jun  2 17:59 ATLAS.root_0
[2025-06-02 22:22:58] -rw-r--r--. 2 boinc boinc    508874 Jun  2 17:59 input.tar.gz
[2025-06-02 22:22:58] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:59 start_atlas.sh
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc 174487149 Jun  2 21:39 HITS.pool.root.1
[2025-06-02 22:22:58] -rw-------. 1 boinc boinc   1536000 Jun  2 21:42 result.tar.gz
22:23:00 (31358): run_atlas exited; CPU time 46930.074247
22:23:00 (31358): called boinc_finish(0)

</stderr_txt>
]]>

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