Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:16 (31185): wrapper (7.7.26015): starting
17:56:16 (31185): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 17:56:16] Arguments: --nthreads 8
[2025-06-02 17:56:16] Threads: 8
[2025-06-02 17:56:16] Checking for CVMFS
[2025-06-02 17:56:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 17:56:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 17:56:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 17:56:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 17:56:19] 2.11.2.0 3966 30524 93228 146710 0 16 24264569 25165825 4633 130560 0 16610175 99.797 17947891 2083 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 17:56:19] CVMFS is ok
[2025-06-02 17:56:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 17:56:19] Checking for apptainer binary...
[2025-06-02 17:56:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 17:56:19] Running /usr/bin/apptainer --version
[2025-06-02 17:56:19] apptainer version 1.3.2-1.el7
[2025-06-02 17:56:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:26:59] cg-vwn439.simple-grid.lan
[2025-06-02 18:26:59] apptainer works
[2025-06-02 18:26:59] Set ATHENA_PROC_NUMBER=8
[2025-06-02 18:26:59] Set ATHENA_CORE_NUMBER=8
[2025-06-02 18:26:59] Starting ATLAS job with PandaID=6677376763
[2025-06-02 18:26:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:33:25]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:33:25] 2025-06-02 20:15:45,198 | INFO     | extracted standard info from prmon json
[2025-06-02 22:33:25] 2025-06-02 20:15:45,198 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:33:25] 2025-06-02 20:15:45,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:33:25] 2025-06-02 20:15:45,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:33:25] 2025-06-02 20:15:45,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:33:25] 2025-06-02 20:15:45,203 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:33:25] 2025-06-02 20:15:45,204 | INFO     | sum of square deviations: 2912836010.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,205 | INFO     | sum of deviations: 63477746800.00003
[2025-06-02 22:33:25] 2025-06-02 20:15:45,206 | INFO     | mean x: 1748888785.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,206 | INFO     | mean y: 2437647.9952606633
[2025-06-02 22:33:25] 2025-06-02 20:15:45,206 | INFO     | -- intersect: -38110081935.82768
[2025-06-02 22:33:25] 2025-06-02 20:15:45,206 | INFO     | intersect: -38110081935.82768
[2025-06-02 22:33:25] 2025-06-02 20:15:45,207 | INFO     | chi2: 8.100954216821844
[2025-06-02 22:33:25] 2025-06-02 20:15:45,207 | INFO     | sum of square deviations: 2710627567.5
[2025-06-02 22:33:25] 2025-06-02 20:15:45,209 | INFO     | sum of deviations: 75937232839.50008
[2025-06-02 22:33:25] 2025-06-02 20:15:45,209 | INFO     | mean x: 1748888632.5
[2025-06-02 22:33:25] 2025-06-02 20:15:45,209 | INFO     | mean y: 2446842.7330097086
[2025-06-02 22:33:25] 2025-06-02 20:15:45,209 | INFO     | -- intersect: -48992023990.821434
[2025-06-02 22:33:25] 2025-06-02 20:15:45,209 | INFO     | intersect: -48992023990.821434
[2025-06-02 22:33:25] 2025-06-02 20:15:45,209 | INFO     | chi2: 7.417609153878369
[2025-06-02 22:33:25] 2025-06-02 20:15:45,210 | INFO     | current chi2=7.417609153878369 (change=8.435365077418789 %)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,210 | INFO     | right removable region: 205
[2025-06-02 22:33:25] 2025-06-02 20:15:45,210 | INFO     | sum of square deviations: 2710627567.5
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | sum of deviations: -9609450566.499996
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | mean x: 1748888937.5
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | mean y: 2492729.4126213593
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | -- intersect: 6202481983.821674
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | intersect: 6202481983.821674
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | chi2: 3.0498861097153735
[2025-06-02 22:33:25] 2025-06-02 20:15:45,212 | INFO     | current chi2=3.0498861097153735 (change=62.351520227306004 %)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,213 | INFO     | sum of square deviations: 2518000700.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,214 | INFO     | sum of deviations: -54679487745.00001
[2025-06-02 22:33:25] 2025-06-02 20:15:45,215 | INFO     | mean x: 1748889090.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,215 | INFO     | mean y: 2528242.407960199
[2025-06-02 22:33:25] 2025-06-02 20:15:45,215 | INFO     | -- intersect: 37980420609.16513
[2025-06-02 22:33:25] 2025-06-02 20:15:45,215 | INFO     | intersect: 37980420609.16513
[2025-06-02 22:33:25] 2025-06-02 20:15:45,215 | INFO     | chi2: 1.0211538018867201
[2025-06-02 22:33:25] 2025-06-02 20:15:45,215 | INFO     | current chi2=1.0211538018867201 (change=66.51829723628539 %)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,216 | INFO     | sum of square deviations: 2334722845.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,217 | INFO     | sum of deviations: -56245344233.50001
[2025-06-02 22:33:25] 2025-06-02 20:15:45,217 | INFO     | mean x: 1748889242.5
[2025-06-02 22:33:25] 2025-06-02 20:15:45,217 | INFO     | mean y: 2529478.8724489794
[2025-06-02 22:33:25] 2025-06-02 20:15:45,217 | INFO     | -- intersect: 42134672778.59571
[2025-06-02 22:33:25] 2025-06-02 20:15:45,218 | INFO     | intersect: 42134672778.59571
[2025-06-02 22:33:25] 2025-06-02 20:15:45,218 | INFO     | chi2: 0.9745503157238096
[2025-06-02 22:33:25] 2025-06-02 20:15:45,218 | INFO     | current chi2=0.9745503157238096 (change=4.563806752401478 %)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,218 | INFO     | left removable region: 30
[2025-06-02 22:33:25] 2025-06-02 20:15:45,218 | INFO     | sum of square deviations: 1661798600.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,220 | INFO     | sum of deviations: -24001849035.000004
[2025-06-02 22:33:25] 2025-06-02 20:15:45,220 | INFO     | mean x: 1748889517.0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,220 | INFO     | mean y: 2524536.4285714286
[2025-06-02 22:33:25] 2025-06-02 20:15:45,220 | INFO     | -- intersect: 25262253462.622196
[2025-06-02 22:33:25] 2025-06-02 20:15:45,220 | INFO     | intersect: 25262253462.622196
[2025-06-02 22:33:25] 2025-06-02 20:15:45,221 | INFO     | chi2: 0.1506766860653767
[2025-06-02 22:33:25] 2025-06-02 20:15:45,221 | INFO     | -- intersect: 25262253462.622196
[2025-06-02 22:33:25] 2025-06-02 20:15:45,221 | INFO     | current memory leak: -14.44 B/s (using 175 data points, chi2=0.15)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | ..............................
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . Timing measurements:
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . get job = 0 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . initial setup = 11 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . payload setup = 177 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . stage-in = 0 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . payload execution = 13012 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,222 | INFO     | . stage-out = 4 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,223 | INFO     | . log creation = 1 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,223 | INFO     | ..............................
[2025-06-02 22:33:25] 2025-06-02 20:15:45,341 | INFO     | 
[2025-06-02 22:33:25] 2025-06-02 20:15:45,341 | INFO     | job summary report
[2025-06-02 22:33:25] 2025-06-02 20:15:45,341 | INFO     | --------------------------------------------------
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | PanDA job id: 6677376763
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | task id: 45006595
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | errors: (none)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | pilot state: finished 
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | transexitcode: 0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | exeerrorcode: 0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | exeerrordiag: 
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | exitcode: 0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | exitmsg: OK
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | cpuconsumptiontime: 47393 s
[2025-06-02 22:33:25] 2025-06-02 20:15:45,342 | INFO     | nevents: 400
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | neventsw: 0
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | pid: 31559
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | pgrp: 31559
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | corecount: 8
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | event service: False
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | sizes: {0: 2404344, 1: 2405200, 2: 2405200, 13: 2405228, 23: 2405284, 34: 2405312, 45: 2405468, 55: 2405496, 66: 2405524, 77: 2405552, 88: 2405608, 95: 2406122, 98
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | --------------------------------------------------
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | 
[2025-06-02 22:33:25] 2025-06-02 20:15:45,343 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-02 22:33:25] 2025-06-02 20:15:45,592 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,592 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,592 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | job 6677376763 has completed (purged errors)
[2025-06-02 22:33:25] 2025-06-02 20:15:45,594 | INFO     | overall cleanup function is called
[2025-06-02 22:33:25] 2025-06-02 20:15:46,603 | INFO     | --- collectZombieJob: --- 10, [31559]
[2025-06-02 22:33:25] 2025-06-02 20:15:46,603 | INFO     | zombie collector waiting for pid 31559
[2025-06-02 22:33:25] 2025-06-02 20:15:46,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:33:25] 2025-06-02 20:15:46,604 | INFO     | collected zombie processes
[2025-06-02 22:33:25] 2025-06-02 20:15:46,604 | INFO     | will attempt to kill all subprocesses of pid=31559
[2025-06-02 22:33:25] 2025-06-02 20:15:46,713 | INFO     | process IDs to be killed: [31559] (in reverse order)
[2025-06-02 22:33:25] 2025-06-02 20:15:47,202 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:33:25] 2025-06-02 20:15:47,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:33:25] 2025-06-02 20:15:47,206 | INFO     | did not find any defunct processes belonging to 31559
[2025-06-02 22:33:25] 2025-06-02 20:15:47,210 | INFO     | did not find any defunct processes belonging to 31559
[2025-06-02 22:33:25] 2025-06-02 20:15:47,210 | INFO     | ready for new job
[2025-06-02 22:33:25] 2025-06-02 20:15:47,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:33:25] 2025-06-02 20:15:47,212 | INFO     | **************************************
[2025-06-02 22:33:25] 2025-06-02 20:15:47,212 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:33:25] 2025-06-02 20:15:47,213 | INFO     | **************************************
[2025-06-02 22:33:25] 2025-06-02 20:15:47,213 | INFO     | 
[2025-06-02 22:33:25] 2025-06-02 20:15:47,213 | INFO     | pilot is running in a VM
[2025-06-02 22:33:25] 2025-06-02 20:15:47,213 | INFO     | architecture information:
[2025-06-02 22:33:25] 2025-06-02 20:15:47,218 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:33:25] 2025-06-02 20:15:47,369 | INFO     | cat /etc/os-release:
[2025-06-02 22:33:25] NAME="CentOS Linux"
[2025-06-02 22:33:25] VERSION="7 (Core)"
[2025-06-02 22:33:25] ID="centos"
[2025-06-02 22:33:25] ID_LIKE="rhel fedora"
[2025-06-02 22:33:25] VERSION_ID="7"
[2025-06-02 22:33:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:33:25] ANSI_COLOR="0;31"
[2025-06-02 22:33:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:33:25] HOME_URL="https://www.centos.org/"
[2025-06-02 22:33:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:33:25] 
[2025-06-02 22:33:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:33:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:33:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:33:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:33:25] 
[2025-06-02 22:33:25] 2025-06-02 20:15:47,370 | INFO     | **************************************
[2025-06-02 22:33:25] 2025-06-02 20:15:47,873 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-02 22:33:25] 2025-06-02 20:15:48,164 | INFO     | sufficient remaining disk space (496487104512 B)
[2025-06-02 22:33:25] 2025-06-02 20:15:48,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:33:25] 2025-06-02 20:15:48,164 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:33:25] 2025-06-02 20:15:48,164 | INFO     | update_server=False
[2025-06-02 22:33:25] 2025-06-02 20:15:48,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:33:25] 2025-06-02 20:15:48,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:33:25] 2025-06-02 20:15:48,167 | INFO     | aborting loop
[2025-06-02 22:33:25] 2025-06-02 20:15:48,168 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:33:25] 2025-06-02 20:15:48,168 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:33:25] 2025-06-02 20:15:48,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:33:25] 2025-06-02 20:15:48,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:33:25] 2025-06-02 20:15:48,176 | INFO     | all job control threads have been joined
[2025-06-02 22:33:25] 2025-06-02 20:15:48,177 | INFO     | all payload control threads have been joined
[2025-06-02 22:33:25] 2025-06-02 20:15:48,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:33:25] 2025-06-02 20:15:48,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:33:25] 2025-06-02 20:15:49,065 | INFO     | all data control threads have been joined
[2025-06-02 22:33:25] 2025-06-02 20:15:49,170 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,173 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,174 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,182 | INFO     | [job] control thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,186 | INFO     | [payload] control thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,349 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,602 | INFO     | [job] validate thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,874 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:49,992 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:50,071 | INFO     | [data] control thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:50,125 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:50,191 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:50,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:33:25] 2025-06-02 20:15:50,439 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:51,361 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:52,526 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:33:25] 2025-06-02 20:15:54,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377386600256)>', '<ExcThread(monitor, started 140376937572096)>']
[2025-06-02 22:33:25] 2025-06-02 20:15:55,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:33:25] 2025-06-02 20:15:55,210 | INFO     | [monitor] control thread has ended
[2025-06-02 22:33:25] 2025-06-02 20:15:59,643 | INFO     | all workflow threads have been joined
[2025-06-02 22:33:25] 2025-06-02 20:15:59,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:33:25] 2025-06-02 20:15:59,644 | INFO     | traces error code: 0
[2025-06-02 22:33:25] 2025-06-02 20:15:59,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:33:25] 2025-06-02 20:16:00,057 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:33:25] 2025-06-02 20:16:00,170 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:33:25] 2025-06-02 20:16:00,272 [wrapper] pilotpid: 24918
[2025-06-02 22:33:25] 2025-06-02 20:16:00,360 [wrapper] Pilot exit status: 0
[2025-06-02 22:33:25] 2025-06-02 20:16:00,795 [wrapper] pandaids: 6677376763
[2025-06-02 22:33:25] 2025-06-02 20:16:01,361 [wrapper] cleanup supervisor_pilot 25835 24919
[2025-06-02 22:33:25] 2025-06-02 20:16:01,433 [wrapper] Test setup, not cleaning
[2025-06-02 22:33:25] 2025-06-02 20:16:01,561 [wrapper] apfmon messages muted
[2025-06-02 22:33:25] 2025-06-02 20:16:01,694 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:33:25] 2025-06-02 20:16:01,786 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:33:25]  *** Error codes and diagnostics ***
[2025-06-02 22:33:25]     "exeErrorCode": 0,
[2025-06-02 22:33:25]     "exeErrorDiag": "",
[2025-06-02 22:33:25]     "pilotErrorCode": 0,
[2025-06-02 22:33:25]     "pilotErrorDiag": "",
[2025-06-02 22:33:25]  *** Listing of results directory ***
[2025-06-02 22:33:25] total 387860
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:33:25] -rwx------. 1 boinc boinc     37140 Jun  2 17:49 runpilot2-wrapper.sh
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc       100 Jun  2 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:33:25] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 17:56 run_atlas
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc       105 Jun  2 17:56 job.xml
[2025-06-02 22:33:25] -rw-r--r--. 2 boinc boinc 214886623 Jun  2 17:56 EVNT.45006593._000019.pool.root.1
[2025-06-02 22:33:25] -rw-r--r--. 2 boinc boinc    508875 Jun  2 17:56 input.tar.gz
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc      6392 Jun  2 17:56 init_data.xml
[2025-06-02 22:33:25] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:56 start_atlas.sh
[2025-06-02 22:33:25] drwxrwx--x. 2 boinc boinc        68 Jun  2 17:56 shared
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc         0 Jun  2 17:56 boinc_lockfile
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc      2519 Jun  2 18:26 pandaJob.out
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc    988242 Jun  2 18:30 agis_schedconf.cvmfs.json
[2025-06-02 22:33:25] drwx------. 4 boinc boinc      4096 Jun  2 18:30 pilot3
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc 175379787 Jun  2 22:12 HITS.45006595._000470.pool.root.1
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc       531 Jun  2 22:13 boinc_task_state.xml
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc      1019 Jun  2 22:13 memory_monitor_summary.json
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc   1603667 Jun  2 22:14 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc    384877 Jun  2 22:14 log.45006595._000470.job.log.tgz.1
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc        95 Jun  2 22:15 pilot_heartbeat.json
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc      7691 Jun  2 22:15 heartbeat.json
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc      4539 Jun  2 22:15 pilotlog.txt
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc   1155546 Jun  2 22:16 log.45006595._000470.job.log.1
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc       357 Jun  2 22:16 output.list
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc       620 Jun  2 22:16 runtime_log
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc   1556480 Jun  2 22:16 result.tar.gz
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc      8659 Jun  2 22:16 runtime_log.err
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc       657 Jun  2 22:16 2XuKDmkaMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3yeKDmseIStn.diag
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:33 boinc_mmap_file
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:33 wrapper_checkpoint.txt
[2025-06-02 22:33:25] -rw-r--r--. 1 boinc boinc     20521 Jun  2 22:33 stderr.txt
[2025-06-02 22:33:25] HITS file was successfully produced:
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc 175379787 Jun  2 22:12 shared/HITS.pool.root.1
[2025-06-02 22:33:25]  *** Contents of shared directory: ***
[2025-06-02 22:33:25] total 383160
[2025-06-02 22:33:25] -rw-r--r--. 2 boinc boinc 214886623 Jun  2 17:56 ATLAS.root_0
[2025-06-02 22:33:25] -rw-r--r--. 2 boinc boinc    508875 Jun  2 17:56 input.tar.gz
[2025-06-02 22:33:25] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:56 start_atlas.sh
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc 175379787 Jun  2 22:12 HITS.pool.root.1
[2025-06-02 22:33:25] -rw-------. 1 boinc boinc   1556480 Jun  2 22:16 result.tar.gz
22:33:27 (31185): run_atlas exited; CPU time 47548.255584
22:33:27 (31185): called boinc_finish(0)

</stderr_txt>
]]>

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