Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:53:46 (2270): wrapper (7.7.26015): starting
17:53:46 (2270): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 17:53:46] Arguments: --nthreads 8
[2025-06-02 17:53:46] Threads: 8
[2025-06-02 17:53:46] Checking for CVMFS
[2025-06-02 17:53:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 17:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 17:53:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 17:53:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 17:53:49] 2.11.2.0 22385 30715 89908 146710 3 170 24259980 25165825 4585 130560 0 17226236 99.809 18328706 2276 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 17:53:49] CVMFS is ok
[2025-06-02 17:53:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 17:53:49] Checking for apptainer binary...
[2025-06-02 17:53:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 17:53:49] Running /usr/bin/apptainer --version
[2025-06-02 17:53:49] apptainer version 1.3.2-1.el7
[2025-06-02 17:53:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 17:53:58] cg-vwn497.simple-grid.lan
[2025-06-02 17:53:58] apptainer works
[2025-06-02 17:53:58] Set ATHENA_PROC_NUMBER=8
[2025-06-02 17:53:58] Set ATHENA_CORE_NUMBER=8
[2025-06-02 17:53:58] Starting ATLAS job with PandaID=6677380563
[2025-06-02 17:53:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 22:03:01]  *** The last 200 lines of the pilot log: ***
[2025-06-02 22:03:01] 2025-06-02 19:29:04,254 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 22:03:01] 2025-06-02 19:29:04,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 22:03:01] 2025-06-02 19:29:04,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 22:03:01] 2025-06-02 19:29:04,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 22:03:01] 2025-06-02 19:29:04,258 | INFO     | fitting pss+swap vs Time
[2025-06-02 22:03:01] 2025-06-02 19:29:04,259 | INFO     | sum of square deviations: 2443580700.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,260 | INFO     | sum of deviations: 82495737661.99998
[2025-06-02 22:03:01] 2025-06-02 19:29:04,260 | INFO     | mean x: 1748886399.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,260 | INFO     | mean y: 2401355.447236181
[2025-06-02 22:03:01] 2025-06-02 19:29:04,260 | INFO     | -- intersect: -59040327854.414276
[2025-06-02 22:03:01] 2025-06-02 19:29:04,260 | INFO     | intersect: -59040327854.414276
[2025-06-02 22:03:01] 2025-06-02 19:29:04,261 | INFO     | chi2: 7.7511416622658516
[2025-06-02 22:03:01] 2025-06-02 19:29:04,261 | INFO     | sum of square deviations: 2263977332.5
[2025-06-02 22:03:01] 2025-06-02 19:29:04,262 | INFO     | sum of deviations: 93301925238.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,262 | INFO     | mean x: 1748886246.5
[2025-06-02 22:03:01] 2025-06-02 19:29:04,263 | INFO     | mean y: 2410304.175257732
[2025-06-02 22:03:01] 2025-06-02 19:29:04,263 | INFO     | -- intersect: -72071833319.3348
[2025-06-02 22:03:01] 2025-06-02 19:29:04,263 | INFO     | intersect: -72071833319.3348
[2025-06-02 22:03:01] 2025-06-02 19:29:04,263 | INFO     | chi2: 7.063932843065164
[2025-06-02 22:03:01] 2025-06-02 19:29:04,263 | INFO     | current chi2=7.063932843065164 (change=8.865904522764193 %)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,263 | INFO     | right removable region: 193
[2025-06-02 22:03:01] 2025-06-02 19:29:04,264 | INFO     | sum of square deviations: 2263977332.5
[2025-06-02 22:03:01] 2025-06-02 19:29:04,272 | INFO     | sum of deviations: 14340064982.500002
[2025-06-02 22:03:01] 2025-06-02 19:29:04,272 | INFO     | mean x: 1748886551.5
[2025-06-02 22:03:01] 2025-06-02 19:29:04,272 | INFO     | mean y: 2459174.3041237113
[2025-06-02 22:03:01] 2025-06-02 19:29:04,273 | INFO     | -- intersect: -11075013393.778814
[2025-06-02 22:03:01] 2025-06-02 19:29:04,273 | INFO     | intersect: -11075013393.778814
[2025-06-02 22:03:01] 2025-06-02 19:29:04,273 | INFO     | chi2: 2.7119501174457845
[2025-06-02 22:03:01] 2025-06-02 19:29:04,273 | INFO     | current chi2=2.7119501174457845 (change=65.01224934840096 %)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,273 | INFO     | sum of square deviations: 2093397390.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | sum of deviations: -25634428269.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | mean x: 1748886704.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | mean y: 2494740.433862434
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | -- intersect: 21418261750.774803
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | intersect: 21418261750.774803
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | chi2: 0.9249665022334806
[2025-06-02 22:03:01] 2025-06-02 19:29:04,275 | INFO     | current chi2=0.9249665022334806 (change=65.89293821139128 %)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,276 | INFO     | sum of square deviations: 1931608310.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,277 | INFO     | sum of deviations: -25035987037.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,277 | INFO     | mean x: 1748886856.5
[2025-06-02 22:03:01] 2025-06-02 19:29:04,277 | INFO     | mean y: 2494098.5760869565
[2025-06-02 22:03:01] 2025-06-02 19:29:04,277 | INFO     | -- intersect: 22670189428.854347
[2025-06-02 22:03:01] 2025-06-02 19:29:04,277 | INFO     | intersect: 22670189428.854347
[2025-06-02 22:03:01] 2025-06-02 19:29:04,277 | INFO     | chi2: 0.8936377644424655
[2025-06-02 22:03:01] 2025-06-02 19:29:04,278 | INFO     | current chi2=0.8936377644424655 (change=3.3870132286268646 %)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,278 | INFO     | left removable region: 30
[2025-06-02 22:03:01] 2025-06-02 19:29:04,278 | INFO     | sum of square deviations: 1342841922.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,279 | INFO     | sum of deviations: 2698472737.9999995
[2025-06-02 22:03:01] 2025-06-02 19:29:04,279 | INFO     | mean x: 1748887131.0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,279 | INFO     | mean y: 2489746.9018404908
[2025-06-02 22:03:01] 2025-06-02 19:29:04,279 | INFO     | -- intersect: -3511940483.138694
[2025-06-02 22:03:01] 2025-06-02 19:29:04,279 | INFO     | intersect: -3511940483.138694
[2025-06-02 22:03:01] 2025-06-02 19:29:04,280 | INFO     | chi2: 0.0002269440791928061
[2025-06-02 22:03:01] 2025-06-02 19:29:04,280 | INFO     | -- intersect: -3511940483.138694
[2025-06-02 22:03:01] 2025-06-02 19:29:04,280 | INFO     | current memory leak: 2.01 B/s (using 163 data points, chi2=0.00)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | ..............................
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . Timing measurements:
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . get job = 0 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . initial setup = 10 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . payload setup = 181 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . stage-in = 0 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . payload execution = 12248 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . stage-out = 3 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | . log creation = 1 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,281 | INFO     | ..............................
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | 
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | job summary report
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | --------------------------------------------------
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | PanDA job id: 6677380563
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | task id: 45006595
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | errors: (none)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,419 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | pilot state: finished 
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | transexitcode: 0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | exeerrorcode: 0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | exeerrordiag: 
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | exitcode: 0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | exitmsg: OK
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | cpuconsumptiontime: 43564 s
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | nevents: 400
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | neventsw: 0
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | pid: 13250
[2025-06-02 22:03:01] 2025-06-02 19:29:04,420 | INFO     | pgrp: 13250
[2025-06-02 22:03:01] 2025-06-02 19:29:04,421 | INFO     | corecount: 8
[2025-06-02 22:03:01] 2025-06-02 19:29:04,421 | INFO     | event service: False
[2025-06-02 22:03:01] 2025-06-02 19:29:04,421 | INFO     | sizes: {0: 2404348, 1: 2405034, 2: 2405233, 12: 2405233, 23: 2405261, 34: 2405289, 45: 2405445, 55: 2405473, 66: 2405501, 77: 2405529, 87: 2405585, 97: 2406099, 98
[2025-06-02 22:03:01] 2025-06-02 19:29:04,421 | INFO     | --------------------------------------------------
[2025-06-02 22:03:01] 2025-06-02 19:29:04,421 | INFO     | 
[2025-06-02 22:03:01] 2025-06-02 19:29:04,421 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-02 22:03:01] 2025-06-02 19:29:04,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | job 6677380563 has completed (purged errors)
[2025-06-02 22:03:01] 2025-06-02 19:29:04,683 | INFO     | overall cleanup function is called
[2025-06-02 22:03:01] 2025-06-02 19:29:05,693 | INFO     | --- collectZombieJob: --- 10, [13250]
[2025-06-02 22:03:01] 2025-06-02 19:29:05,693 | INFO     | zombie collector waiting for pid 13250
[2025-06-02 22:03:01] 2025-06-02 19:29:05,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 22:03:01] 2025-06-02 19:29:05,694 | INFO     | collected zombie processes
[2025-06-02 22:03:01] 2025-06-02 19:29:05,694 | INFO     | will attempt to kill all subprocesses of pid=13250
[2025-06-02 22:03:01] 2025-06-02 19:29:05,782 | INFO     | process IDs to be killed: [13250] (in reverse order)
[2025-06-02 22:03:01] 2025-06-02 19:29:05,862 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 22:03:01] 2025-06-02 19:29:05,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 22:03:01] 2025-06-02 19:29:05,865 | INFO     | did not find any defunct processes belonging to 13250
[2025-06-02 22:03:01] 2025-06-02 19:29:05,868 | INFO     | did not find any defunct processes belonging to 13250
[2025-06-02 22:03:01] 2025-06-02 19:29:05,868 | INFO     | ready for new job
[2025-06-02 22:03:01] 2025-06-02 19:29:05,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 22:03:01] 2025-06-02 19:29:05,870 | INFO     | **************************************
[2025-06-02 22:03:01] 2025-06-02 19:29:05,870 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 22:03:01] 2025-06-02 19:29:05,870 | INFO     | **************************************
[2025-06-02 22:03:01] 2025-06-02 19:29:05,870 | INFO     | 
[2025-06-02 22:03:01] 2025-06-02 19:29:05,871 | INFO     | pilot is running in a VM
[2025-06-02 22:03:01] 2025-06-02 19:29:05,871 | INFO     | architecture information:
[2025-06-02 22:03:01] 2025-06-02 19:29:05,872 | INFO     | executing command: cat /etc/os-release
[2025-06-02 22:03:01] 2025-06-02 19:29:06,011 | INFO     | cat /etc/os-release:
[2025-06-02 22:03:01] NAME="CentOS Linux"
[2025-06-02 22:03:01] VERSION="7 (Core)"
[2025-06-02 22:03:01] ID="centos"
[2025-06-02 22:03:01] ID_LIKE="rhel fedora"
[2025-06-02 22:03:01] VERSION_ID="7"
[2025-06-02 22:03:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 22:03:01] ANSI_COLOR="0;31"
[2025-06-02 22:03:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 22:03:01] HOME_URL="https://www.centos.org/"
[2025-06-02 22:03:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 22:03:01] 
[2025-06-02 22:03:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 22:03:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 22:03:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 22:03:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 22:03:01] 
[2025-06-02 22:03:01] 2025-06-02 19:29:06,012 | INFO     | **************************************
[2025-06-02 22:03:01] 2025-06-02 19:29:06,515 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-02 22:03:01] 2025-06-02 19:29:06,675 | INFO     | sufficient remaining disk space (497795727360 B)
[2025-06-02 22:03:01] 2025-06-02 19:29:06,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 22:03:01] 2025-06-02 19:29:06,675 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 22:03:01] 2025-06-02 19:29:06,675 | INFO     | update_server=False
[2025-06-02 22:03:01] 2025-06-02 19:29:06,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 22:03:01] 2025-06-02 19:29:06,676 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:03:01] 2025-06-02 19:29:06,676 | INFO     | aborting loop
[2025-06-02 22:03:01] 2025-06-02 19:29:06,676 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 22:03:01] 2025-06-02 19:29:06,677 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 22:03:01] 2025-06-02 19:29:06,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 22:03:01] 2025-06-02 19:29:06,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 22:03:01] 2025-06-02 19:29:06,719 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 22:03:01] 2025-06-02 19:29:06,727 | INFO     | all job control threads have been joined
[2025-06-02 22:03:01] 2025-06-02 19:29:07,170 | INFO     | all data control threads have been joined
[2025-06-02 22:03:01] 2025-06-02 19:29:07,356 | INFO     | all payload control threads have been joined
[2025-06-02 22:03:01] 2025-06-02 19:29:07,681 | INFO     | [job] retrieve thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:07,682 | INFO     | [job] job monitor thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:07,733 | INFO     | [job] control thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:07,893 | INFO     | [payload] failed_post thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,045 | INFO     | [data] copytool_in thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 22:03:01] 2025-06-02 19:29:08,176 | INFO     | [data] control thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,362 | INFO     | [payload] control thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,531 | INFO     | [job] validate thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,726 | INFO     | [data] copytool_out thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,792 | INFO     | [payload] validate_post thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:08,970 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:09,010 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:09,140 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:09,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 22:03:01] 2025-06-02 19:29:10,439 | INFO     | [job] queue monitor thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:12,109 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:17,629 | INFO     | job.realtimelogging is not enabled
[2025-06-02 22:03:01] 2025-06-02 19:29:18,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 22:03:01] 2025-06-02 19:29:19,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088554940224)>', '<ExcThread(monitor, started 140088117806848)>']
[2025-06-02 22:03:01] 2025-06-02 19:29:19,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 22:03:01] 2025-06-02 19:29:19,757 | INFO     | [monitor] control thread has ended
[2025-06-02 22:03:01] 2025-06-02 19:29:24,483 | INFO     | all workflow threads have been joined
[2025-06-02 22:03:01] 2025-06-02 19:29:24,483 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 22:03:01] 2025-06-02 19:29:24,484 | INFO     | traces error code: 0
[2025-06-02 22:03:01] 2025-06-02 19:29:24,484 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 22:03:01] 2025-06-02 19:29:24,896 [wrapper] ==== pilot stdout END ====
[2025-06-02 22:03:01] 2025-06-02 19:29:24,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 22:03:01] 2025-06-02 19:29:25,004 [wrapper] pilotpid: 6641
[2025-06-02 22:03:01] 2025-06-02 19:29:25,080 [wrapper] Pilot exit status: 0
[2025-06-02 22:03:01] 2025-06-02 19:29:25,468 [wrapper] pandaids: 6677380563
[2025-06-02 22:03:01] 2025-06-02 19:29:25,964 [wrapper] cleanup supervisor_pilot 19634 6642
[2025-06-02 22:03:01] 2025-06-02 19:29:26,022 [wrapper] Test setup, not cleaning
[2025-06-02 22:03:01] 2025-06-02 19:29:26,121 [wrapper] apfmon messages muted
[2025-06-02 22:03:01] 2025-06-02 19:29:26,214 [wrapper] ==== wrapper stdout END ====
[2025-06-02 22:03:01] 2025-06-02 19:29:26,272 [wrapper] ==== wrapper stderr END ====
[2025-06-02 22:03:01]  *** Error codes and diagnostics ***
[2025-06-02 22:03:01]     "exeErrorCode": 0,
[2025-06-02 22:03:01]     "exeErrorDiag": "",
[2025-06-02 22:03:01]     "pilotErrorCode": 0,
[2025-06-02 22:03:01]     "pilotErrorDiag": "",
[2025-06-02 22:03:01]  *** Listing of results directory ***
[2025-06-02 22:03:01] total 389796
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:48 queuedata.json
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-02 22:03:01] -rwx------. 1 boinc boinc     37140 Jun  2 17:48 runpilot2-wrapper.sh
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc       100 Jun  2 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 22:03:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 17:53 run_atlas
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc       105 Jun  2 17:53 job.xml
[2025-06-02 22:03:01] -rw-r--r--. 2 boinc boinc 216484172 Jun  2 17:53 EVNT.45006593._000088.pool.root.1
[2025-06-02 22:03:01] drwxrwx--x. 2 boinc boinc        68 Jun  2 17:53 shared
[2025-06-02 22:03:01] -rw-r--r--. 2 boinc boinc    508869 Jun  2 17:53 input.tar.gz
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc      6392 Jun  2 17:53 init_data.xml
[2025-06-02 22:03:01] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:53 start_atlas.sh
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc         0 Jun  2 17:53 boinc_lockfile
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc      2521 Jun  2 17:53 pandaJob.out
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc    988242 Jun  2 17:57 agis_schedconf.cvmfs.json
[2025-06-02 22:03:01] drwx------. 4 boinc boinc      4096 Jun  2 17:57 pilot3
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc 175906098 Jun  2 21:26 HITS.45006595._002195.pool.root.1
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc       531 Jun  2 21:27 boinc_task_state.xml
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc      1020 Jun  2 21:27 memory_monitor_summary.json
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc   1603667 Jun  2 21:27 agis_ddmendpoints.agis.ALL.json
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc    379587 Jun  2 21:27 log.45006595._002195.job.log.tgz.1
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc        95 Jun  2 21:28 pilot_heartbeat.json
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc      7688 Jun  2 21:29 heartbeat.json
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc      4612 Jun  2 21:29 pilotlog.txt
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc   1090134 Jun  2 21:29 log.45006595._002195.job.log.1
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc       357 Jun  2 21:29 output.list
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc       620 Jun  2 21:29 runtime_log
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc   1484800 Jun  2 21:29 result.tar.gz
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc      8673 Jun  2 21:29 runtime_log.err
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc       657 Jun  2 21:29 H0kLDm4ZMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbxeKDmARj5Nm.diag
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc      8192 Jun  2 22:03 boinc_mmap_file
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc        28 Jun  2 22:03 wrapper_checkpoint.txt
[2025-06-02 22:03:01] -rw-r--r--. 1 boinc boinc     20510 Jun  2 22:03 stderr.txt
[2025-06-02 22:03:01] HITS file was successfully produced:
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc 175906098 Jun  2 21:26 shared/HITS.pool.root.1
[2025-06-02 22:03:01]  *** Contents of shared directory: ***
[2025-06-02 22:03:01] total 385164
[2025-06-02 22:03:01] -rw-r--r--. 2 boinc boinc 216484172 Jun  2 17:53 ATLAS.root_0
[2025-06-02 22:03:01] -rw-r--r--. 2 boinc boinc    508869 Jun  2 17:53 input.tar.gz
[2025-06-02 22:03:01] -rw-r--r--. 2 boinc boinc     15093 Jun  2 17:53 start_atlas.sh
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc 175906098 Jun  2 21:26 HITS.pool.root.1
[2025-06-02 22:03:01] -rw-------. 1 boinc boinc   1484800 Jun  2 21:29 result.tar.gz
22:03:03 (2270): run_atlas exited; CPU time 43705.693609
22:03:03 (2270): called boinc_finish(0)

</stderr_txt>
]]>

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