Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:50:34 (3706990): wrapper (7.7.26015): starting
04:50:34 (3706990): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 04:50:34] Arguments: --nthreads 8
[2025-06-02 04:50:34] Threads: 8
[2025-06-02 04:50:34] Checking for CVMFS
[2025-06-02 04:50:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 04:50:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 04:50:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 04:50:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 04:50:35] 2.12.6.0 976873 20142 352284 146699 0 86 27360375 32935936 15042 16776704 1 90004434 99.488 113379255 23975 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-02 04:50:35] CVMFS is ok
[2025-06-02 04:50:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 04:50:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 04:50:35] Further information can be found at the LHC@home message board.
[2025-06-02 04:50:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 04:50:35] Checking for apptainer binary...
[2025-06-02 04:50:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 04:50:35] Running /usr/bin/apptainer --version
[2025-06-02 04:50:35] apptainer version 1.4.1-1.el9
[2025-06-02 04:50:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 04:50:35] c6-4-5-1.aglt2.org
[2025-06-02 04:50:35] apptainer works
[2025-06-02 04:50:35] Set ATHENA_PROC_NUMBER=8
[2025-06-02 04:50:35] Set ATHENA_CORE_NUMBER=8
[2025-06-02 04:50:35] Starting ATLAS job with PandaID=6665675531
[2025-06-02 04:50:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 06:45:23]  *** The last 200 lines of the pilot log: ***
[2025-06-02 06:45:23] 2025-06-02 10:44:58,922 | INFO     | total number of processed events: 400 (read)
[2025-06-02 06:45:23] 2025-06-02 10:44:58,939 | INFO     | executing command: lscpu
[2025-06-02 06:45:23] 2025-06-02 10:44:59,010 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 06:45:23] 2025-06-02 10:44:59,260 | INFO     | monitor loop #497: job 0:6665675531 is in state 'finished'
[2025-06-02 06:45:23] 2025-06-02 10:44:59,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 06:45:23] 2025-06-02 10:45:01,764 | INFO     | monitor loop #498: job 0:6665675531 is in state 'finished'
[2025-06-02 06:45:23] 2025-06-02 10:45:01,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 06:45:23] 2025-06-02 10:45:02,839 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-02 06:45:23] 2025-06-02 10:45:02,839 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6665675531/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 06:45:23] 2025-06-02 10:45:02,841 | INFO     | extracted standard info from prmon json
[2025-06-02 06:45:23] 2025-06-02 10:45:02,841 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 06:45:23] 2025-06-02 10:45:02,841 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 06:45:23] 2025-06-02 10:45:02,842 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 06:45:23] 2025-06-02 10:45:02,842 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 06:45:23] 2025-06-02 10:45:02,845 | INFO     | fitting pss+swap vs Time
[2025-06-02 06:45:23] 2025-06-02 10:45:02,845 | INFO     | sum of square deviations: 435604843.99107105
[2025-06-02 06:45:23] 2025-06-02 10:45:02,846 | INFO     | sum of deviations: 2737660237.6785684
[2025-06-02 06:45:23] 2025-06-02 10:45:02,846 | INFO     | mean x: 1748857657.5089285
[2025-06-02 06:45:23] 2025-06-02 10:45:02,847 | INFO     | mean y: 2211606.3214285714
[2025-06-02 06:45:23] 2025-06-02 10:45:02,847 | INFO     | -- intersect: -10988892226.35316
[2025-06-02 06:45:23] 2025-06-02 10:45:02,847 | INFO     | intersect: -10988892226.35316
[2025-06-02 06:45:23] 2025-06-02 10:45:02,847 | INFO     | chi2: 1.6890134017142115
[2025-06-02 06:45:23] 2025-06-02 10:45:02,848 | INFO     | sum of square deviations: 379827358.9906545
[2025-06-02 06:45:23] 2025-06-02 10:45:02,848 | INFO     | sum of deviations: 3737579670.906544
[2025-06-02 06:45:23] 2025-06-02 10:45:02,848 | INFO     | mean x: 1748857505.0093458
[2025-06-02 06:45:23] 2025-06-02 10:45:02,849 | INFO     | mean y: 2214238.0934579438
[2025-06-02 06:45:23] 2025-06-02 10:45:02,849 | INFO     | -- intersect: -17206904861.18685
[2025-06-02 06:45:23] 2025-06-02 10:45:02,849 | INFO     | intersect: -17206904861.18685
[2025-06-02 06:45:23] 2025-06-02 10:45:02,849 | INFO     | chi2: 1.679367616187524
[2025-06-02 06:45:23] 2025-06-02 10:45:02,849 | INFO     | current chi2=1.679367616187524 (change=0.5710899343307703 %)
[2025-06-02 06:45:23] 2025-06-02 10:45:02,849 | INFO     | right removable region: 106
[2025-06-02 06:45:23] 2025-06-02 10:45:02,850 | INFO     | sum of square deviations: 379826748.9906545
[2025-06-02 06:45:23] 2025-06-02 10:45:02,850 | INFO     | sum of deviations: -11594004567.551394
[2025-06-02 06:45:23] 2025-06-02 10:45:02,850 | INFO     | mean x: 1748857810.0093458
[2025-06-02 06:45:23] 2025-06-02 10:45:02,851 | INFO     | mean y: 2249955.551401869
[2025-06-02 06:45:23] 2025-06-02 10:45:02,851 | INFO     | -- intersect: 53385181755.71582
[2025-06-02 06:45:23] 2025-06-02 10:45:02,851 | INFO     | intersect: 53385181755.71582
[2025-06-02 06:45:23] 2025-06-02 10:45:02,851 | INFO     | chi2: 0.2409832770946381
[2025-06-02 06:45:23] 2025-06-02 10:45:02,851 | INFO     | current chi2=0.2409832770946381 (change=85.73230521142938 %)
[2025-06-02 06:45:23] 2025-06-02 10:45:02,852 | INFO     | sum of square deviations: 329025491.49019575
[2025-06-02 06:45:23] 2025-06-02 10:45:02,852 | INFO     | sum of deviations: -6597922658.29412
[2025-06-02 06:45:23] 2025-06-02 10:45:02,852 | INFO     | mean x: 1748857962.509804
[2025-06-02 06:45:23] 2025-06-02 10:45:02,852 | INFO     | mean y: 2234911.794117647
[2025-06-02 06:45:23] 2025-06-02 10:45:02,853 | INFO     | -- intersect: 35071947974.81786
[2025-06-02 06:45:23] 2025-06-02 10:45:02,853 | INFO     | intersect: 35071947974.81786
[2025-06-02 06:45:23] 2025-06-02 10:45:02,853 | INFO     | chi2: 0.19342418962651184
[2025-06-02 06:45:23] 2025-06-02 10:45:02,853 | INFO     | current chi2=0.19342418962651184 (change=19.73543062469394 %)
[2025-06-02 06:45:23] 2025-06-02 10:45:02,853 | INFO     | left removable region: 20
[2025-06-02 06:45:23] 2025-06-02 10:45:02,853 | INFO     | sum of square deviations: 197203697.5
[2025-06-02 06:45:23] 2025-06-02 10:45:02,854 | INFO     | sum of deviations: 1317934462.9999998
[2025-06-02 06:45:23] 2025-06-02 10:45:02,854 | INFO     | mean x: 1748858084.5
[2025-06-02 06:45:23] 2025-06-02 10:45:02,854 | INFO     | mean y: 2214418.8139534886
[2025-06-02 06:45:23] 2025-06-02 10:45:02,854 | INFO     | -- intersect: -11685600615.479284
[2025-06-02 06:45:23] 2025-06-02 10:45:02,854 | INFO     | intersect: -11685600615.479284
[2025-06-02 06:45:23] 2025-06-02 10:45:02,854 | INFO     | chi2: 0.014610558146275017
[2025-06-02 06:45:23] 2025-06-02 10:45:02,855 | INFO     | -- intersect: -11685600615.479284
[2025-06-02 06:45:23] 2025-06-02 10:45:02,855 | INFO     | current memory leak: 6.68 B/s (using 86 data points, chi2=0.01)
[2025-06-02 06:45:23] 2025-06-02 10:45:02,855 | INFO     | ..............................
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . Timing measurements:
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . get job = 0 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . initial setup = 3 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . payload setup = 7 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . stage-in = 0 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . payload execution = 6825 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . stage-out = 0 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | . log creation = 0 s
[2025-06-02 06:45:23] 2025-06-02 10:45:02,856 | INFO     | ..............................
[2025-06-02 06:45:23] 2025-06-02 10:45:03,387 | INFO     | 
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | job summary report
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | --------------------------------------------------
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | PanDA job id: 6665675531
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | task id: 44871837
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | errors: (none)
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | pilot state: finished 
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | transexitcode: 0
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | exeerrorcode: 0
[2025-06-02 06:45:23] 2025-06-02 10:45:03,388 | INFO     | exeerrordiag: 
[2025-06-02 06:45:23] 2025-06-02 10:45:03,389 | INFO     | exitcode: 0
[2025-06-02 06:45:23] 2025-06-02 10:45:03,389 | INFO     | exitmsg: OK
[2025-06-02 06:45:23] 2025-06-02 10:45:03,389 | INFO     | cpuconsumptiontime: 49060 s
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | nevents: 400
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | neventsw: 0
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | pid: 3718043
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | pgrp: 3718043
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | corecount: 8
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | event service: False
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | sizes: {0: 2405061, 1: 2405260, 5: 2405466, 11: 2405522, 6836: 2432534, 6838: 2441659, 6842: 2441773}
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | --------------------------------------------------
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | 
[2025-06-02 06:45:23] 2025-06-02 10:45:03,390 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 06:45:23] 2025-06-02 10:45:03,412 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,414 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 06:45:23] 2025-06-02 10:45:03,415 | INFO     | job 6665675531 has completed (purged errors)
[2025-06-02 06:45:23] 2025-06-02 10:45:03,415 | INFO     | overall cleanup function is called
[2025-06-02 06:45:23] 2025-06-02 10:45:04,423 | INFO     | --- collectZombieJob: --- 10, [3718043]
[2025-06-02 06:45:23] 2025-06-02 10:45:04,424 | INFO     | zombie collector waiting for pid 3718043
[2025-06-02 06:45:23] 2025-06-02 10:45:04,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 06:45:23] 2025-06-02 10:45:04,425 | INFO     | collected zombie processes
[2025-06-02 06:45:23] 2025-06-02 10:45:04,425 | INFO     | will attempt to kill all subprocesses of pid=3718043
[2025-06-02 06:45:23] 2025-06-02 10:45:04,689 | INFO     | process IDs to be killed: [3718043] (in reverse order)
[2025-06-02 06:45:23] 2025-06-02 10:45:04,771 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 06:45:23] 2025-06-02 10:45:04,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 06:45:23] 2025-06-02 10:45:04,782 | INFO     | did not find any defunct processes belonging to 3718043
[2025-06-02 06:45:23] 2025-06-02 10:45:04,792 | INFO     | did not find any defunct processes belonging to 3718043
[2025-06-02 06:45:23] 2025-06-02 10:45:04,792 | INFO     | ready for new job
[2025-06-02 06:45:23] 2025-06-02 10:45:04,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 06:45:23] 2025-06-02 10:45:04,794 | INFO     | **************************************
[2025-06-02 06:45:23] 2025-06-02 10:45:04,794 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 06:45:23] 2025-06-02 10:45:04,794 | INFO     | **************************************
[2025-06-02 06:45:23] 2025-06-02 10:45:04,794 | INFO     | 
[2025-06-02 06:45:23] 2025-06-02 10:45:04,811 | INFO     | architecture information:
[2025-06-02 06:45:23] 2025-06-02 10:45:04,811 | INFO     | executing command: cat /etc/os-release
[2025-06-02 06:45:23] 2025-06-02 10:45:04,825 | INFO     | cat /etc/os-release:
[2025-06-02 06:45:23] NAME="CentOS Linux"
[2025-06-02 06:45:23] VERSION="7 (Core)"
[2025-06-02 06:45:23] ID="centos"
[2025-06-02 06:45:23] ID_LIKE="rhel fedora"
[2025-06-02 06:45:23] VERSION_ID="7"
[2025-06-02 06:45:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 06:45:23] ANSI_COLOR="0;31"
[2025-06-02 06:45:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 06:45:23] HOME_URL="https://www.centos.org/"
[2025-06-02 06:45:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 06:45:23] 
[2025-06-02 06:45:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 06:45:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 06:45:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 06:45:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 06:45:23] 
[2025-06-02 06:45:23] 2025-06-02 10:45:04,826 | INFO     | **************************************
[2025-06-02 06:45:23] 2025-06-02 10:45:05,328 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 06:45:23] 2025-06-02 10:45:05,343 | INFO     | sufficient remaining disk space (76548145152 B)
[2025-06-02 06:45:23] 2025-06-02 10:45:05,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 06:45:23] 2025-06-02 10:45:05,343 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 06:45:23] 2025-06-02 10:45:05,344 | INFO     | update_server=False
[2025-06-02 06:45:23] 2025-06-02 10:45:05,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 06:45:23] 2025-06-02 10:45:05,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 06:45:23] 2025-06-02 10:45:05,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 06:45:23] 2025-06-02 10:45:05,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 06:45:23] 2025-06-02 10:45:05,345 | INFO     | aborting loop
[2025-06-02 06:45:23] 2025-06-02 10:45:05,805 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 06:45:23] 2025-06-02 10:45:05,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 06:45:23] 2025-06-02 10:45:05,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 06:45:23] 2025-06-02 10:45:06,118 | INFO     | all data control threads have been joined
[2025-06-02 06:45:23] 2025-06-02 10:45:06,350 | INFO     | [job] retrieve thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:06,350 | INFO     | [job] job monitor thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:06,440 | INFO     | [payload] failed_post thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:06,470 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:06,513 | INFO     | [job] validate thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:06,583 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:06,597 | INFO     | all payload control threads have been joined
[2025-06-02 06:45:23] 2025-06-02 10:45:06,615 | INFO     | all job control threads have been joined
[2025-06-02 06:45:23] 2025-06-02 10:45:07,124 | INFO     | [data] control thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,197 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,351 | INFO     | [data] copytool_out thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,599 | INFO     | [data] copytool_in thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,603 | INFO     | [payload] control thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,622 | INFO     | [job] control thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,891 | INFO     | [payload] validate_post thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:07,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 06:45:23] 2025-06-02 10:45:08,993 | INFO     | [job] queue monitor thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:09,352 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:15,933 | INFO     | job.realtimelogging is not enabled
[2025-06-02 06:45:23] 2025-06-02 10:45:16,938 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 06:45:23] 2025-06-02 10:45:17,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139847756453696)>', '<ExcThread(monitor, started 139847255701248)>']
[2025-06-02 06:45:23] 2025-06-02 10:45:18,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 06:45:23] 2025-06-02 10:45:18,873 | INFO     | [monitor] control thread has ended
[2025-06-02 06:45:23] 2025-06-02 10:45:22,955 | INFO     | all workflow threads have been joined
[2025-06-02 06:45:23] 2025-06-02 10:45:22,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 06:45:23] 2025-06-02 10:45:22,956 | INFO     | traces error code: 0
[2025-06-02 06:45:23] 2025-06-02 10:45:22,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 06:45:23] 2025-06-02 10:45:23,174 [wrapper] ==== pilot stdout END ====
[2025-06-02 06:45:23] 2025-06-02 10:45:23,176 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 06:45:23] 2025-06-02 10:45:23,178 [wrapper] pilotpid: 3710685
[2025-06-02 06:45:23] 2025-06-02 10:45:23,180 [wrapper] Pilot exit status: 0
[2025-06-02 06:45:23] 2025-06-02 10:45:23,188 [wrapper] pandaids: 6665675531
[2025-06-02 06:45:23] 2025-06-02 10:45:23,241 [wrapper] cleanup supervisor_pilot 4149925 3710686
[2025-06-02 06:45:23] 2025-06-02 10:45:23,243 [wrapper] Test setup, not cleaning
[2025-06-02 06:45:23] 2025-06-02 10:45:23,245 [wrapper] apfmon messages muted
[2025-06-02 06:45:23] 2025-06-02 10:45:23,247 [wrapper] ==== wrapper stdout END ====
[2025-06-02 06:45:23] 2025-06-02 10:45:23,249 [wrapper] ==== wrapper stderr END ====
[2025-06-02 06:45:23]  *** Error codes and diagnostics ***
[2025-06-02 06:45:23]     "exeErrorCode": 0,
[2025-06-02 06:45:23]     "exeErrorDiag": "",
[2025-06-02 06:45:23]     "pilotErrorCode": 0,
[2025-06-02 06:45:23]     "pilotErrorDiag": "",
[2025-06-02 06:45:23]  *** Listing of results directory ***
[2025-06-02 06:45:23] total 417784
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas    495897 May 24 12:47 pilot3.tar.gz
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas      5111 May 24 13:26 queuedata.json
[2025-06-02 06:45:23] -rwx------. 1 boincer umatlas     37140 May 24 13:26 runpilot2-wrapper.sh
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas       100 Jun  2 04:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 06:45:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  2 04:50 run_atlas
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas       105 Jun  2 04:50 job.xml
[2025-06-02 06:45:23] -rw-r--r--. 2 boincer umatlas 225420178 Jun  2 04:50 EVNT.44871834._000840.pool.root.1
[2025-06-02 06:45:23] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 04:50 start_atlas.sh
[2025-06-02 06:45:23] drwxrwx--x. 2 boincer umatlas      4096 Jun  2 04:50 shared
[2025-06-02 06:45:23] -rw-r--r--. 2 boincer umatlas    508878 Jun  2 04:50 input.tar.gz
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas         0 Jun  2 04:50 boinc_lockfile
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas      2558 Jun  2 04:50 pandaJob.out
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas    988196 Jun  2 04:50 agis_schedconf.cvmfs.json
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas   1603667 Jun  2 04:50 agis_ddmendpoints.agis.ALL.json
[2025-06-02 06:45:23] drwx------. 4 boincer umatlas      4096 Jun  2 04:50 pilot3
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas      6855 Jun  2 06:40 init_data.xml
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas 196581964 Jun  2 06:44 HITS.44871837._021085.pool.root.1
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas       529 Jun  2 06:44 boinc_task_state.xml
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas        95 Jun  2 06:44 pilot_heartbeat.json
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas      1042 Jun  2 06:44 memory_monitor_summary.json
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas      8192 Jun  2 06:44 boinc_mmap_file
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas        27 Jun  2 06:44 wrapper_checkpoint.txt
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas    330494 Jun  2 06:44 log.44871837._021085.job.log.tgz.1
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas      7713 Jun  2 06:45 heartbeat.json
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas      4425 Jun  2 06:45 pilotlog.txt
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas    651439 Jun  2 06:45 log.44871837._021085.job.log.1
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas       357 Jun  2 06:45 output.list
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas       620 Jun  2 06:45 runtime_log
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas   1003520 Jun  2 06:45 result.tar.gz
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas       653 Jun  2 06:45 z9ALDmxo7c7n9Rq4apOajLDm4fhM0noT9bVof3QYDmL4MKDmM64eZm.diag
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas      8659 Jun  2 06:45 runtime_log.err
[2025-06-02 06:45:23] -rw-r--r--. 1 boincer umatlas     21132 Jun  2 06:45 stderr.txt
[2025-06-02 06:45:23] HITS file was successfully produced:
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas 196581964 Jun  2 06:44 shared/HITS.pool.root.1
[2025-06-02 06:45:23]  *** Contents of shared directory: ***
[2025-06-02 06:45:23] total 413620
[2025-06-02 06:45:23] -rw-r--r--. 2 boincer umatlas 225420178 Jun  2 04:50 ATLAS.root_0
[2025-06-02 06:45:23] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 04:50 start_atlas.sh
[2025-06-02 06:45:23] -rw-r--r--. 2 boincer umatlas    508878 Jun  2 04:50 input.tar.gz
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas 196581964 Jun  2 06:44 HITS.pool.root.1
[2025-06-02 06:45:23] -rw-------. 1 boincer umatlas   1003520 Jun  2 06:45 result.tar.gz
06:45:24 (3706990): run_atlas exited; CPU time 49207.489946
06:45:24 (3706990): called boinc_finish(0)

</stderr_txt>
]]>

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