Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:38:42 (99086): wrapper (7.7.26015): starting
04:38:42 (99086): wrapper: running run_atlas (--nthreads 9)
[2025-06-02 04:38:42] Arguments: --nthreads 9
[2025-06-02 04:38:42] Threads: 9
[2025-06-02 04:38:42] Checking for CVMFS
[2025-06-02 04:38:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 04:38:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 04:38:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 04:38:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 04:38:46] 2.11.2.0 6612 25673 147936 146699 2 76 10553601 18432001 11438 130560 0 50301909 99.465 58389881 26980 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-02 04:38:46] CVMFS is ok
[2025-06-02 04:38:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 04:38:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 04:38:46] Further information can be found at the LHC@home message board.
[2025-06-02 04:38:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 04:38:46] Checking for apptainer binary...
[2025-06-02 04:38:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 04:38:46] Running /usr/bin/apptainer --version
[2025-06-02 04:38:48] apptainer version 1.3.2-1.el7
[2025-06-02 04:38:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 04:39:15] c-210-31-1.aglt2.org
[2025-06-02 04:39:15] apptainer works
[2025-06-02 04:39:16] Set ATHENA_PROC_NUMBER=9
[2025-06-02 04:39:16] Set ATHENA_CORE_NUMBER=9
[2025-06-02 04:39:16] Starting ATLAS job with PandaID=6666055058
[2025-06-02 04:39:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 12:37:23]  *** The last 200 lines of the pilot log: ***
[2025-06-02 12:37:23] 2025-06-02 16:37:02,509 | INFO     | extracted standard info from prmon json
[2025-06-02 12:37:23] 2025-06-02 16:37:02,509 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 12:37:23] 2025-06-02 16:37:02,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 12:37:23] 2025-06-02 16:37:02,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 12:37:23] 2025-06-02 16:37:02,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 12:37:23] 2025-06-02 16:37:02,573 | INFO     | fitting pss+swap vs Time
[2025-06-02 12:37:23] 2025-06-02 16:37:02,574 | INFO     | sum of square deviations: 30775229636.691196
[2025-06-02 12:37:23] 2025-06-02 16:37:02,602 | INFO     | sum of deviations: 324988179082.8984
[2025-06-02 12:37:23] 2025-06-02 16:37:02,603 | INFO     | mean x: 1748868030.6803455
[2025-06-02 12:37:23] 2025-06-02 16:37:02,603 | INFO     | mean y: 2467384.384449244
[2025-06-02 12:37:23] 2025-06-02 16:37:02,622 | INFO     | -- intersect: -18465678701.17657
[2025-06-02 12:37:23] 2025-06-02 16:37:02,626 | INFO     | intersect: -18465678701.17657
[2025-06-02 12:37:23] 2025-06-02 16:37:02,627 | INFO     | chi2: 6.053289148778341
[2025-06-02 12:37:23] 2025-06-02 16:37:02,628 | INFO     | sum of square deviations: 29788944211.224937
[2025-06-02 12:37:23] 2025-06-02 16:37:02,654 | INFO     | sum of deviations: 351882667838.15955
[2025-06-02 12:37:23] 2025-06-02 16:37:02,654 | INFO     | mean x: 1748867878.1855896
[2025-06-02 12:37:23] 2025-06-02 16:37:02,654 | INFO     | mean y: 2471500.53930131
[2025-06-02 12:37:23] 2025-06-02 16:37:02,654 | INFO     | -- intersect: -20656075184.056377
[2025-06-02 12:37:23] 2025-06-02 16:37:02,654 | INFO     | intersect: -20656075184.056377
[2025-06-02 12:37:23] 2025-06-02 16:37:02,655 | INFO     | chi2: 5.283339362618405
[2025-06-02 12:37:23] 2025-06-02 16:37:02,672 | INFO     | current chi2=5.283339362618405 (change=12.719527635902296 %)
[2025-06-02 12:37:23] 2025-06-02 16:37:02,673 | INFO     | right removable region: 457
[2025-06-02 12:37:23] 2025-06-02 16:37:02,673 | INFO     | sum of square deviations: 29788780181.85145
[2025-06-02 12:37:23] 2025-06-02 16:37:02,696 | INFO     | sum of deviations: 173376835126.96484
[2025-06-02 12:37:23] 2025-06-02 16:37:02,696 | INFO     | mean x: 1748868183.187773
[2025-06-02 12:37:23] 2025-06-02 16:37:02,697 | INFO     | mean y: 2490806.2794759823
[2025-06-02 12:37:23] 2025-06-02 16:37:02,697 | INFO     | -- intersect: -10176282168.11949
[2025-06-02 12:37:23] 2025-06-02 16:37:02,697 | INFO     | intersect: -10176282168.11949
[2025-06-02 12:37:23] 2025-06-02 16:37:02,697 | INFO     | chi2: 2.0692348683196
[2025-06-02 12:37:23] 2025-06-02 16:37:02,698 | INFO     | current chi2=2.0692348683196 (change=65.81635508462027 %)
[2025-06-02 12:37:23] 2025-06-02 16:37:02,718 | INFO     | sum of square deviations: 28823661390.348824
[2025-06-02 12:37:23] 2025-06-02 16:37:02,737 | INFO     | sum of deviations: 96981753068.56285
[2025-06-02 12:37:23] 2025-06-02 16:37:02,738 | INFO     | mean x: 1748868335.6931567
[2025-06-02 12:37:23] 2025-06-02 16:37:02,738 | INFO     | mean y: 2502854.536423841
[2025-06-02 12:37:23] 2025-06-02 16:37:02,738 | INFO     | -- intersect: -5881840386.409817
[2025-06-02 12:37:23] 2025-06-02 16:37:02,738 | INFO     | intersect: -5881840386.409817
[2025-06-02 12:37:23] 2025-06-02 16:37:02,739 | INFO     | chi2: 1.0453694989090192
[2025-06-02 12:37:23] 2025-06-02 16:37:02,739 | INFO     | current chi2=1.0453694989090192 (change=49.480384517299825 %)
[2025-06-02 12:37:23] 2025-06-02 16:37:02,752 | INFO     | sum of square deviations: 27879612639.319252
[2025-06-02 12:37:23] 2025-06-02 16:37:02,770 | INFO     | sum of deviations: 65195159160.964325
[2025-06-02 12:37:23] 2025-06-02 16:37:02,770 | INFO     | mean x: 1748868488.1986606
[2025-06-02 12:37:23] 2025-06-02 16:37:02,770 | INFO     | mean y: 2507982.6071428573
[2025-06-02 12:37:23] 2025-06-02 16:37:02,770 | INFO     | -- intersect: -4087138488.2661614
[2025-06-02 12:37:23] 2025-06-02 16:37:02,770 | INFO     | intersect: -4087138488.2661614
[2025-06-02 12:37:23] 2025-06-02 16:37:02,771 | INFO     | chi2: 0.8937760125544498
[2025-06-02 12:37:23] 2025-06-02 16:37:02,787 | INFO     | current chi2=0.8937760125544498 (change=14.501426195500935 %)
[2025-06-02 12:37:23] 2025-06-02 16:37:02,787 | INFO     | left removable region: 30
[2025-06-02 12:37:23] 2025-06-02 16:37:02,788 | INFO     | sum of square deviations: 24139825750.819588
[2025-06-02 12:37:23] 2025-06-02 16:37:02,813 | INFO     | sum of deviations: 54336884208.655754
[2025-06-02 12:37:23] 2025-06-02 16:37:02,813 | INFO     | mean x: 1748868762.7049181
[2025-06-02 12:37:23] 2025-06-02 16:37:02,813 | INFO     | mean y: 2519407.449648712
[2025-06-02 12:37:23] 2025-06-02 16:37:02,813 | INFO     | -- intersect: -3934049167.491528
[2025-06-02 12:37:23] 2025-06-02 16:37:02,813 | INFO     | intersect: -3934049167.491528
[2025-06-02 12:37:23] 2025-06-02 16:37:02,814 | INFO     | chi2: 0.006534281645669076
[2025-06-02 12:37:23] 2025-06-02 16:37:02,837 | INFO     | -- intersect: -3934049167.491528
[2025-06-02 12:37:23] 2025-06-02 16:37:02,838 | INFO     | current memory leak: 2.25 B/s (using 427 data points, chi2=0.01)
[2025-06-02 12:37:23] 2025-06-02 16:37:02,838 | INFO     | ..............................
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . Timing measurements:
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . get job = 1 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . initial setup = 9 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . payload setup = 90 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . stage-in = 1 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . payload execution = 28316 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . stage-out = 6 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | . log creation = 1 s
[2025-06-02 12:37:23] 2025-06-02 16:37:02,839 | INFO     | ..............................
[2025-06-02 12:37:23] 2025-06-02 16:37:03,587 | INFO     | 
[2025-06-02 12:37:23] 2025-06-02 16:37:03,592 | INFO     | job summary report
[2025-06-02 12:37:23] 2025-06-02 16:37:03,595 | INFO     | --------------------------------------------------
[2025-06-02 12:37:23] 2025-06-02 16:37:03,595 | INFO     | PanDA job id: 6666055058
[2025-06-02 12:37:23] 2025-06-02 16:37:03,597 | INFO     | task id: 44871837
[2025-06-02 12:37:23] 2025-06-02 16:37:03,599 | INFO     | errors: (none)
[2025-06-02 12:37:23] 2025-06-02 16:37:03,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 12:37:23] 2025-06-02 16:37:03,600 | INFO     | pilot state: finished 
[2025-06-02 12:37:23] 2025-06-02 16:37:03,600 | INFO     | transexitcode: 0
[2025-06-02 12:37:23] 2025-06-02 16:37:03,600 | INFO     | exeerrorcode: 0
[2025-06-02 12:37:23] 2025-06-02 16:37:03,600 | INFO     | exeerrordiag: 
[2025-06-02 12:37:23] 2025-06-02 16:37:03,604 | INFO     | exitcode: 0
[2025-06-02 12:37:23] 2025-06-02 16:37:03,604 | INFO     | exitmsg: OK
[2025-06-02 12:37:23] 2025-06-02 16:37:03,604 | INFO     | cpuconsumptiontime: 61914 s
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | nevents: 400
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | neventsw: 0
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | pid: 136852
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | pgrp: 136852
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | corecount: 9
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | event service: False
[2025-06-02 12:37:23] 2025-06-02 16:37:03,605 | INFO     | sizes: {0: 2405063, 1: 2405262, 13: 2405262, 24: 2405318, 35: 2405346, 46: 2405374, 55: 2405736, 57: 2405764, 28412: 2442138, 28420: 2451079, 28422: 2451135, 28472
[2025-06-02 12:37:23] 2025-06-02 16:37:03,608 | INFO     | --------------------------------------------------
[2025-06-02 12:37:23] 2025-06-02 16:37:03,609 | INFO     | 
[2025-06-02 12:37:23] 2025-06-02 16:37:03,609 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 12:37:23] 2025-06-02 16:37:03,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,795 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | job 6666055058 has completed (purged errors)
[2025-06-02 12:37:23] 2025-06-02 16:37:03,796 | INFO     | overall cleanup function is called
[2025-06-02 12:37:23] 2025-06-02 16:37:04,807 | INFO     | --- collectZombieJob: --- 10, [136852]
[2025-06-02 12:37:23] 2025-06-02 16:37:04,807 | INFO     | zombie collector waiting for pid 136852
[2025-06-02 12:37:23] 2025-06-02 16:37:04,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 12:37:23] 2025-06-02 16:37:04,808 | INFO     | collected zombie processes
[2025-06-02 12:37:23] 2025-06-02 16:37:04,808 | INFO     | will attempt to kill all subprocesses of pid=136852
[2025-06-02 12:37:23] 2025-06-02 16:37:07,892 | INFO     | process IDs to be killed: [136852] (in reverse order)
[2025-06-02 12:37:23] 2025-06-02 16:37:08,694 | INFO     | PID=112436 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-02 12:37:23] 2025-06-02 16:37:08,698 | INFO     | .. there are 10 such processes running
[2025-06-02 12:37:23] 2025-06-02 16:37:09,136 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 12:37:23] 2025-06-02 16:37:09,136 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 12:37:23] 2025-06-02 16:37:09,212 | INFO     | did not find any defunct processes belonging to 136852
[2025-06-02 12:37:23] 2025-06-02 16:37:09,248 | INFO     | did not find any defunct processes belonging to 136852
[2025-06-02 12:37:23] 2025-06-02 16:37:09,249 | INFO     | ready for new job
[2025-06-02 12:37:23] 2025-06-02 16:37:09,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 12:37:23] 2025-06-02 16:37:09,264 | INFO     | **************************************
[2025-06-02 12:37:23] 2025-06-02 16:37:09,264 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 12:37:23] 2025-06-02 16:37:09,264 | INFO     | **************************************
[2025-06-02 12:37:23] 2025-06-02 16:37:09,264 | INFO     | 
[2025-06-02 12:37:23] 2025-06-02 16:37:09,283 | INFO     | architecture information:
[2025-06-02 12:37:23] 2025-06-02 16:37:09,290 | INFO     | executing command: cat /etc/os-release
[2025-06-02 12:37:23] 2025-06-02 16:37:09,471 | INFO     | cat /etc/os-release:
[2025-06-02 12:37:23] NAME="CentOS Linux"
[2025-06-02 12:37:23] VERSION="7 (Core)"
[2025-06-02 12:37:23] ID="centos"
[2025-06-02 12:37:23] ID_LIKE="rhel fedora"
[2025-06-02 12:37:23] VERSION_ID="7"
[2025-06-02 12:37:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 12:37:23] ANSI_COLOR="0;31"
[2025-06-02 12:37:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 12:37:23] HOME_URL="https://www.centos.org/"
[2025-06-02 12:37:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 12:37:23] 
[2025-06-02 12:37:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 12:37:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 12:37:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 12:37:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 12:37:23] 
[2025-06-02 12:37:23] 2025-06-02 16:37:09,472 | INFO     | **************************************
[2025-06-02 12:37:23] 2025-06-02 16:37:09,975 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 12:37:23] 2025-06-02 16:37:10,124 | INFO     | sufficient remaining disk space (56077844480 B)
[2025-06-02 12:37:23] 2025-06-02 16:37:10,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 12:37:23] 2025-06-02 16:37:10,125 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 12:37:23] 2025-06-02 16:37:10,125 | INFO     | update_server=False
[2025-06-02 12:37:23] 2025-06-02 16:37:10,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 12:37:23] 2025-06-02 16:37:10,126 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 12:37:23] 2025-06-02 16:37:10,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 12:37:23] 2025-06-02 16:37:10,126 | INFO     | aborting loop
[2025-06-02 12:37:23] 2025-06-02 16:37:10,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 12:37:23] 2025-06-02 16:37:10,397 | INFO     | all payload control threads have been joined
[2025-06-02 12:37:23] 2025-06-02 16:37:10,424 | INFO     | all data control threads have been joined
[2025-06-02 12:37:23] 2025-06-02 16:37:10,705 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 12:37:23] 2025-06-02 16:37:10,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 12:37:23] 2025-06-02 16:37:10,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 12:37:23] 2025-06-02 16:37:11,131 | INFO     | [job] retrieve thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,139 | INFO     | [job] job monitor thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,163 | INFO     | all job control threads have been joined
[2025-06-02 12:37:23] 2025-06-02 16:37:11,402 | INFO     | [payload] control thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,431 | INFO     | [data] control thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,497 | INFO     | [payload] failed_post thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,831 | INFO     | [payload] validate_post thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,896 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,970 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:11,978 | INFO     | [job] validate thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:12,134 | INFO     | [data] copytool_out thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:12,168 | INFO     | [job] control thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:12,322 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:12,338 | INFO     | [data] copytool_in thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:12,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 12:37:23] 2025-06-02 16:37:13,655 | INFO     | [job] queue monitor thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:14,138 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 12:37:23] 2025-06-02 16:37:14,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140029022795584)>', '<ExcThread(monitor, started 140028575459072)>']
[2025-06-02 12:37:23] 2025-06-02 16:37:14,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 12:37:23] 2025-06-02 16:37:14,728 | INFO     | [monitor] control thread has ended
[2025-06-02 12:37:23] 2025-06-02 16:37:19,599 | INFO     | all workflow threads have been joined
[2025-06-02 12:37:23] 2025-06-02 16:37:19,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 12:37:23] 2025-06-02 16:37:19,600 | INFO     | traces error code: 0
[2025-06-02 12:37:23] 2025-06-02 16:37:19,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 12:37:23] 2025-06-02 16:37:20,486 [wrapper] ==== pilot stdout END ====
[2025-06-02 12:37:23] 2025-06-02 16:37:20,492 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 12:37:23] 2025-06-02 16:37:20,538 [wrapper] pilotpid: 112436
[2025-06-02 12:37:23] 2025-06-02 16:37:20,582 [wrapper] Pilot exit status: 0
[2025-06-02 12:37:23] 2025-06-02 16:37:20,801 [wrapper] pandaids: 6666055058
[2025-06-02 12:37:23] 2025-06-02 16:37:21,113 [wrapper] cleanup supervisor_pilot 282478 112437
[2025-06-02 12:37:23] 2025-06-02 16:37:21,209 [wrapper] Test setup, not cleaning
[2025-06-02 12:37:23] 2025-06-02 16:37:21,242 [wrapper] apfmon messages muted
[2025-06-02 12:37:23] 2025-06-02 16:37:21,286 [wrapper] ==== wrapper stdout END ====
[2025-06-02 12:37:23] 2025-06-02 16:37:21,331 [wrapper] ==== wrapper stderr END ====
[2025-06-02 12:37:23]  *** Error codes and diagnostics ***
[2025-06-02 12:37:23]     "exeErrorCode": 0,
[2025-06-02 12:37:23]     "exeErrorDiag": "",
[2025-06-02 12:37:23]     "pilotErrorCode": 0,
[2025-06-02 12:37:23]     "pilotErrorDiag": "",
[2025-06-02 12:37:23]  *** Listing of results directory ***
[2025-06-02 12:37:23] total 413380
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas    495897 May 26 13:13 pilot3.tar.gz
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas      5111 May 26 13:27 queuedata.json
[2025-06-02 12:37:23] -rwx------ 1 boincer umatlas     37140 May 26 13:27 runpilot2-wrapper.sh
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas       100 Jun  2 04:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 12:37:23] -rwxr-xr-x 1 boincer umatlas      7986 Jun  2 04:38 run_atlas
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas       105 Jun  2 04:38 job.xml
[2025-06-02 12:37:23] -rw-r--r-- 2 boincer umatlas 222359445 Jun  2 04:38 EVNT.44871834._002164.pool.root.1
[2025-06-02 12:37:23] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 04:38 start_atlas.sh
[2025-06-02 12:37:23] drwxrwx--x 2 boincer umatlas      4096 Jun  2 04:38 shared
[2025-06-02 12:37:23] -rw-r--r-- 2 boincer umatlas    508880 Jun  2 04:38 input.tar.gz
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas         0 Jun  2 04:38 boinc_lockfile
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas      2559 Jun  2 04:39 pandaJob.out
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas    988196 Jun  2 04:40 agis_schedconf.cvmfs.json
[2025-06-02 12:37:23] drwx------ 4 boincer umatlas      4096 Jun  2 04:40 pilot3
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas      6355 Jun  2 12:28 init_data.xml
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas 191408838 Jun  2 12:34 HITS.44871837._054459.pool.root.1
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas       531 Jun  2 12:34 boinc_task_state.xml
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas      1057 Jun  2 12:35 memory_monitor_summary.json
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas   1603667 Jun  2 12:36 agis_ddmendpoints.agis.ALL.json
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas    541106 Jun  2 12:36 log.44871837._054459.job.log.tgz.1
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas        95 Jun  2 12:36 pilot_heartbeat.json
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas      7753 Jun  2 12:37 heartbeat.json
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas      4353 Jun  2 12:37 pilotlog.txt
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas   2303160 Jun  2 12:37 log.44871837._054459.job.log.1
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas      8192 Jun  2 12:37 boinc_mmap_file
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas       357 Jun  2 12:37 output.list
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas        28 Jun  2 12:37 wrapper_checkpoint.txt
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas       620 Jun  2 12:37 runtime_log
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas   2867200 Jun  2 12:37 result.tar.gz
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas      8670 Jun  2 12:37 runtime_log.err
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas       665 Jun  2 12:37 ngsMDmimqd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlLXKDmLh0jnm.diag
[2025-06-02 12:37:23] -rw-r--r-- 1 boincer umatlas     20990 Jun  2 12:37 stderr.txt
[2025-06-02 12:37:23] HITS file was successfully produced:
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas 191408838 Jun  2 12:34 shared/HITS.pool.root.1
[2025-06-02 12:37:23]  *** Contents of shared directory: ***
[2025-06-02 12:37:23] total 407396
[2025-06-02 12:37:23] -rw-r--r-- 2 boincer umatlas 222359445 Jun  2 04:38 ATLAS.root_0
[2025-06-02 12:37:23] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 04:38 start_atlas.sh
[2025-06-02 12:37:23] -rw-r--r-- 2 boincer umatlas    508880 Jun  2 04:38 input.tar.gz
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas 191408838 Jun  2 12:34 HITS.pool.root.1
[2025-06-02 12:37:23] -rw------- 1 boincer umatlas   2867200 Jun  2 12:37 result.tar.gz
12:37:25 (99086): run_atlas exited; CPU time 62542.728282
12:37:25 (99086): called boinc_finish(0)

</stderr_txt>
]]>

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