Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:55:05 (392426): wrapper (7.7.26015): starting
03:55:05 (392426): wrapper: running run_atlas (--nthreads 12)
[2025-06-02 03:55:05] Arguments: --nthreads 12
[2025-06-02 03:55:05] Threads: 12
[2025-06-02 03:55:05] Checking for CVMFS
[2025-06-02 03:55:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 03:55:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 03:55:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 03:55:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 03:55:06] 2.12.6.0 2851973 145754 828208 146698 0 302 24783094 25181185 9497 130560 0 307970718 99.380 509638767 23600 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-02 03:55:06] CVMFS is ok
[2025-06-02 03:55:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 03:55:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 03:55:06] Further information can be found at the LHC@home message board.
[2025-06-02 03:55:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 03:55:06] Checking for apptainer binary...
[2025-06-02 03:55:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 03:55:06] Running /usr/bin/apptainer --version
[2025-06-02 03:55:06] apptainer version 1.4.1-1.el9
[2025-06-02 03:55:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 03:55:06] c-16-37.aglt2.org
[2025-06-02 03:55:06] apptainer works
[2025-06-02 03:55:06] Set ATHENA_PROC_NUMBER=12
[2025-06-02 03:55:06] Set ATHENA_CORE_NUMBER=12
[2025-06-02 03:55:06] Starting ATLAS job with PandaID=6668532928
[2025-06-02 03:55:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 07:30:18]  *** The last 200 lines of the pilot log: ***
[2025-06-02 07:30:18] 2025-06-02 11:29:57,709 | INFO     | job 6668532928 has finished - writing final server update
[2025-06-02 07:30:18] 2025-06-02 11:29:57,710 | INFO     | total number of processed events: 400 (read)
[2025-06-02 07:30:18] 2025-06-02 11:29:57,725 | INFO     | executing command: lscpu
[2025-06-02 07:30:18] 2025-06-02 11:29:57,784 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 07:30:18] 2025-06-02 11:29:59,037 | INFO     | monitor loop #793: job 0:6668532928 is in state 'finished'
[2025-06-02 07:30:18] 2025-06-02 11:29:59,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 07:30:18] 2025-06-02 11:30:01,563 | INFO     | monitor loop #794: job 0:6668532928 is in state 'finished'
[2025-06-02 07:30:18] 2025-06-02 11:30:01,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,171 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-02 07:30:18] 2025-06-02 11:30:03,172 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668532928/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,173 | INFO     | extracted standard info from prmon json
[2025-06-02 07:30:18] 2025-06-02 11:30:03,173 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 07:30:18] 2025-06-02 11:30:03,173 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 07:30:18] 2025-06-02 11:30:03,173 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 07:30:18] 2025-06-02 11:30:03,174 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 07:30:18] 2025-06-02 11:30:03,178 | INFO     | fitting pss+swap vs Time
[2025-06-02 07:30:18] 2025-06-02 11:30:03,179 | INFO     | sum of square deviations: 2912626042.047379
[2025-06-02 07:30:18] 2025-06-02 11:30:03,180 | INFO     | sum of deviations: -5986160495.895737
[2025-06-02 07:30:18] 2025-06-02 11:30:03,181 | INFO     | mean x: 1748857350.6492891
[2025-06-02 07:30:18] 2025-06-02 11:30:03,181 | INFO     | mean y: 2358483.028436019
[2025-06-02 07:30:18] 2025-06-02 11:30:03,181 | INFO     | -- intersect: 3596689040.4983873
[2025-06-02 07:30:18] 2025-06-02 11:30:03,181 | INFO     | intersect: 3596689040.4983873
[2025-06-02 07:30:18] 2025-06-02 11:30:03,181 | INFO     | chi2: 1.8952362373574976
[2025-06-02 07:30:18] 2025-06-02 11:30:03,182 | INFO     | sum of square deviations: 2710459382.3883443
[2025-06-02 07:30:18] 2025-06-02 11:30:03,183 | INFO     | sum of deviations: -715601974.7767017
[2025-06-02 07:30:18] 2025-06-02 11:30:03,183 | INFO     | mean x: 1748857198.1650486
[2025-06-02 07:30:18] 2025-06-02 11:30:03,184 | INFO     | mean y: 2362454.169902913
[2025-06-02 07:30:18] 2025-06-02 11:30:03,184 | INFO     | -- intersect: 464087013.75603515
[2025-06-02 07:30:18] 2025-06-02 11:30:03,184 | INFO     | intersect: 464087013.75603515
[2025-06-02 07:30:18] 2025-06-02 11:30:03,184 | INFO     | chi2: 1.870809285321642
[2025-06-02 07:30:18] 2025-06-02 11:30:03,185 | INFO     | current chi2=1.870809285321642 (change=1.288860541729284 %)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,185 | INFO     | right removable region: 205
[2025-06-02 07:30:18] 2025-06-02 11:30:03,185 | INFO     | sum of square deviations: 2710375812.3883443
[2025-06-02 07:30:18] 2025-06-02 11:30:03,186 | INFO     | sum of deviations: -38448877031.77668
[2025-06-02 07:30:18] 2025-06-02 11:30:03,187 | INFO     | mean x: 1748857503.1650486
[2025-06-02 07:30:18] 2025-06-02 11:30:03,187 | INFO     | mean y: 2382737.169902913
[2025-06-02 07:30:18] 2025-06-02 11:30:03,187 | INFO     | -- intersect: 24811343464.295273
[2025-06-02 07:30:18] 2025-06-02 11:30:03,187 | INFO     | intersect: 24811343464.295273
[2025-06-02 07:30:18] 2025-06-02 11:30:03,187 | INFO     | chi2: 0.357448429771224
[2025-06-02 07:30:18] 2025-06-02 11:30:03,188 | INFO     | current chi2=0.357448429771224 (change=81.13963722698709 %)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,188 | INFO     | sum of square deviations: 2517707157.621895
[2025-06-02 07:30:18] 2025-06-02 11:30:03,189 | INFO     | sum of deviations: -34436070117.23882
[2025-06-02 07:30:18] 2025-06-02 11:30:03,189 | INFO     | mean x: 1748857655.681592
[2025-06-02 07:30:18] 2025-06-02 11:30:03,190 | INFO     | mean y: 2379493.7462686566
[2025-06-02 07:30:18] 2025-06-02 11:30:03,190 | INFO     | -- intersect: 23922470706.02439
[2025-06-02 07:30:18] 2025-06-02 11:30:03,190 | INFO     | intersect: 23922470706.02439
[2025-06-02 07:30:18] 2025-06-02 11:30:03,190 | INFO     | chi2: 0.31623567637774264
[2025-06-02 07:30:18] 2025-06-02 11:30:03,190 | INFO     | current chi2=0.31623567637774264 (change=11.529706094906768 %)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,191 | INFO     | left removable region: 20
[2025-06-02 07:30:18] 2025-06-02 11:30:03,191 | INFO     | sum of square deviations: 1963135151.8594553
[2025-06-02 07:30:18] 2025-06-02 11:30:03,192 | INFO     | sum of deviations: -4532538003.940542
[2025-06-02 07:30:18] 2025-06-02 11:30:03,192 | INFO     | mean x: 1748857777.6540542
[2025-06-02 07:30:18] 2025-06-02 11:30:03,193 | INFO     | mean y: 2362763.454054054
[2025-06-02 07:30:18] 2025-06-02 11:30:03,193 | INFO     | -- intersect: 4040171537.4428816
[2025-06-02 07:30:18] 2025-06-02 11:30:03,193 | INFO     | intersect: 4040171537.4428816
[2025-06-02 07:30:18] 2025-06-02 11:30:03,193 | INFO     | chi2: 0.06600553062004756
[2025-06-02 07:30:18] 2025-06-02 11:30:03,193 | INFO     | -- intersect: 4040171537.4428816
[2025-06-02 07:30:18] 2025-06-02 11:30:03,193 | INFO     | current memory leak: -2.31 B/s (using 185 data points, chi2=0.07)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,194 | INFO     | ..............................
[2025-06-02 07:30:18] 2025-06-02 11:30:03,194 | INFO     | . Timing measurements:
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . get job = 0 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . initial setup = 3 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . payload setup = 7 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . stage-in = 0 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . payload execution = 12848 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . stage-out = 3 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | . log creation = 0 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,195 | INFO     | ..............................
[2025-06-02 07:30:18] 2025-06-02 11:30:03,304 | INFO     | 
[2025-06-02 07:30:18] 2025-06-02 11:30:03,305 | INFO     | job summary report
[2025-06-02 07:30:18] 2025-06-02 11:30:03,305 | INFO     | --------------------------------------------------
[2025-06-02 07:30:18] 2025-06-02 11:30:03,305 | INFO     | PanDA job id: 6668532928
[2025-06-02 07:30:18] 2025-06-02 11:30:03,305 | INFO     | task id: 44871837
[2025-06-02 07:30:18] 2025-06-02 11:30:03,305 | INFO     | errors: (none)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,305 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | pilot state: finished 
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | transexitcode: 0
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | exeerrorcode: 0
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | exeerrordiag: 
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | exitcode: 0
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | exitmsg: OK
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | cpuconsumptiontime: 68659 s
[2025-06-02 07:30:18] 2025-06-02 11:30:03,306 | INFO     | nevents: 400
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | neventsw: 0
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | pid: 415221
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | pgrp: 415221
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | corecount: 12
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | event service: False
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | sizes: {0: 2405234, 1: 2405234, 5: 2405468, 11: 2405524, 12860: 2435167, 12864: 2444108, 12865: 2444292, 12871: 2444462}
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | --------------------------------------------------
[2025-06-02 07:30:18] 2025-06-02 11:30:03,307 | INFO     | 
[2025-06-02 07:30:18] 2025-06-02 11:30:03,308 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 07:30:18] 2025-06-02 11:30:03,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,330 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 07:30:18] 2025-06-02 11:30:03,332 | INFO     | job 6668532928 has completed (purged errors)
[2025-06-02 07:30:18] 2025-06-02 11:30:03,333 | INFO     | overall cleanup function is called
[2025-06-02 07:30:18] 2025-06-02 11:30:04,341 | INFO     | --- collectZombieJob: --- 10, [415221]
[2025-06-02 07:30:18] 2025-06-02 11:30:04,341 | INFO     | zombie collector waiting for pid 415221
[2025-06-02 07:30:18] 2025-06-02 11:30:04,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 07:30:18] 2025-06-02 11:30:04,342 | INFO     | collected zombie processes
[2025-06-02 07:30:18] 2025-06-02 11:30:04,342 | INFO     | will attempt to kill all subprocesses of pid=415221
[2025-06-02 07:30:18] 2025-06-02 11:30:04,753 | INFO     | process IDs to be killed: [415221] (in reverse order)
[2025-06-02 07:30:18] 2025-06-02 11:30:04,869 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 07:30:18] 2025-06-02 11:30:04,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 07:30:18] 2025-06-02 11:30:04,884 | INFO     | did not find any defunct processes belonging to 415221
[2025-06-02 07:30:18] 2025-06-02 11:30:04,898 | INFO     | did not find any defunct processes belonging to 415221
[2025-06-02 07:30:18] 2025-06-02 11:30:04,898 | INFO     | ready for new job
[2025-06-02 07:30:18] 2025-06-02 11:30:04,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 07:30:18] 2025-06-02 11:30:04,900 | INFO     | **************************************
[2025-06-02 07:30:18] 2025-06-02 11:30:04,901 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 07:30:18] 2025-06-02 11:30:04,901 | INFO     | **************************************
[2025-06-02 07:30:18] 2025-06-02 11:30:04,901 | INFO     | 
[2025-06-02 07:30:18] 2025-06-02 11:30:04,917 | INFO     | architecture information:
[2025-06-02 07:30:18] 2025-06-02 11:30:04,917 | INFO     | executing command: cat /etc/os-release
[2025-06-02 07:30:18] 2025-06-02 11:30:04,935 | INFO     | cat /etc/os-release:
[2025-06-02 07:30:18] NAME="CentOS Linux"
[2025-06-02 07:30:18] VERSION="7 (Core)"
[2025-06-02 07:30:18] ID="centos"
[2025-06-02 07:30:18] ID_LIKE="rhel fedora"
[2025-06-02 07:30:18] VERSION_ID="7"
[2025-06-02 07:30:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 07:30:18] ANSI_COLOR="0;31"
[2025-06-02 07:30:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 07:30:18] HOME_URL="https://www.centos.org/"
[2025-06-02 07:30:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 07:30:18] 
[2025-06-02 07:30:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 07:30:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 07:30:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 07:30:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 07:30:18] 
[2025-06-02 07:30:18] 2025-06-02 11:30:04,936 | INFO     | **************************************
[2025-06-02 07:30:18] 2025-06-02 11:30:05,439 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 07:30:18] 2025-06-02 11:30:05,458 | INFO     | sufficient remaining disk space (64542998528 B)
[2025-06-02 07:30:18] 2025-06-02 11:30:05,458 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 07:30:18] 2025-06-02 11:30:05,458 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 07:30:18] 2025-06-02 11:30:05,458 | INFO     | update_server=False
[2025-06-02 07:30:18] 2025-06-02 11:30:05,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 07:30:18] 2025-06-02 11:30:05,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 07:30:18] 2025-06-02 11:30:05,459 | INFO     | aborting loop
[2025-06-02 07:30:18] 2025-06-02 11:30:05,819 | INFO     | all data control threads have been joined
[2025-06-02 07:30:18] 2025-06-02 11:30:06,073 | INFO     | all payload control threads have been joined
[2025-06-02 07:30:18] 2025-06-02 11:30:06,163 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 07:30:18] 2025-06-02 11:30:06,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 07:30:18] 2025-06-02 11:30:06,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 07:30:18] 2025-06-02 11:30:06,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 07:30:18] 2025-06-02 11:30:06,464 | INFO     | [job] retrieve thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,464 | INFO     | [job] job monitor thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,599 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,603 | INFO     | [job] validate thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,635 | INFO     | [data] copytool_in thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,695 | INFO     | all job control threads have been joined
[2025-06-02 07:30:18] 2025-06-02 11:30:06,726 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,824 | INFO     | [data] control thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:06,962 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:07,079 | INFO     | [payload] control thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:07,481 | INFO     | [payload] failed_post thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:07,591 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:07,701 | INFO     | [job] control thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:07,828 | INFO     | [payload] validate_post thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:08,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 07:30:18] 2025-06-02 11:30:08,291 | INFO     | [data] copytool_out thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:08,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 07:30:18] 2025-06-02 11:30:09,321 | INFO     | [job] queue monitor thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:12,231 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 07:30:18] 2025-06-02 11:30:13,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439660468032)>', '<ExcThread(monitor, started 140439021664000)>']
[2025-06-02 07:30:18] 2025-06-02 11:30:14,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 07:30:18] 2025-06-02 11:30:14,211 | INFO     | [monitor] control thread has ended
[2025-06-02 07:30:18] 2025-06-02 11:30:18,411 | INFO     | all workflow threads have been joined
[2025-06-02 07:30:18] 2025-06-02 11:30:18,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 07:30:18] 2025-06-02 11:30:18,412 | INFO     | traces error code: 0
[2025-06-02 07:30:18] 2025-06-02 11:30:18,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 07:30:18] 2025-06-02 11:30:18,606 [wrapper] ==== pilot stdout END ====
[2025-06-02 07:30:18] 2025-06-02 11:30:18,610 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 07:30:18] 2025-06-02 11:30:18,614 [wrapper] pilotpid: 397431
[2025-06-02 07:30:18] 2025-06-02 11:30:18,618 [wrapper] Pilot exit status: 0
[2025-06-02 07:30:18] 2025-06-02 11:30:18,633 [wrapper] pandaids: 6668532928
[2025-06-02 07:30:18] 2025-06-02 11:30:18,727 [wrapper] cleanup supervisor_pilot 1711658 397432
[2025-06-02 07:30:18] 2025-06-02 11:30:18,731 [wrapper] Test setup, not cleaning
[2025-06-02 07:30:18] 2025-06-02 11:30:18,735 [wrapper] apfmon messages muted
[2025-06-02 07:30:18] 2025-06-02 11:30:18,739 [wrapper] ==== wrapper stdout END ====
[2025-06-02 07:30:18] 2025-06-02 11:30:18,743 [wrapper] ==== wrapper stderr END ====
[2025-06-02 07:30:18]  *** Error codes and diagnostics ***
[2025-06-02 07:30:18]     "exeErrorCode": 0,
[2025-06-02 07:30:18]     "exeErrorDiag": "",
[2025-06-02 07:30:18]     "pilotErrorCode": 0,
[2025-06-02 07:30:18]     "pilotErrorDiag": "",
[2025-06-02 07:30:18]  *** Listing of results directory ***
[2025-06-02 07:30:18] total 420824
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas    495897 May 28 10:07 pilot3.tar.gz
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas      5111 May 28 10:40 queuedata.json
[2025-06-02 07:30:18] -rwx------. 1 boincer umatlas     37140 May 28 10:40 runpilot2-wrapper.sh
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas       100 Jun  2 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 07:30:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  2 03:55 run_atlas
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas       105 Jun  2 03:55 job.xml
[2025-06-02 07:30:18] -rw-r--r--. 2 boincer umatlas 224287839 Jun  2 03:55 EVNT.44871834._003347.pool.root.1
[2025-06-02 07:30:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 03:55 start_atlas.sh
[2025-06-02 07:30:18] drwxrwx--x. 2 boincer umatlas      4096 Jun  2 03:55 shared
[2025-06-02 07:30:18] -rw-r--r--. 2 boincer umatlas    508878 Jun  2 03:55 input.tar.gz
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas         0 Jun  2 03:55 boinc_lockfile
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas      2559 Jun  2 03:55 pandaJob.out
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas    988196 Jun  2 03:55 agis_schedconf.cvmfs.json
[2025-06-02 07:30:18] drwx------. 4 boincer umatlas      4096 Jun  2 03:55 pilot3
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas      6613 Jun  2 07:28 init_data.xml
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas        95 Jun  2 07:29 pilot_heartbeat.json
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas 199783753 Jun  2 07:29 HITS.44871837._085820.pool.root.1
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas       531 Jun  2 07:29 boinc_task_state.xml
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas      1041 Jun  2 07:29 memory_monitor_summary.json
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas   1603667 Jun  2 07:29 agis_ddmendpoints.agis.ALL.json
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas    434178 Jun  2 07:29 log.44871837._085820.job.log.tgz.1
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas      7725 Jun  2 07:30 heartbeat.json
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  2 07:30 boinc_mmap_file
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas        28 Jun  2 07:30 wrapper_checkpoint.txt
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas      4353 Jun  2 07:30 pilotlog.txt
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas   1070186 Jun  2 07:30 log.44871837._085820.job.log.1
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas       357 Jun  2 07:30 output.list
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas       620 Jun  2 07:30 runtime_log
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas   1525760 Jun  2 07:30 result.tar.gz
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas      8657 Jun  2 07:30 runtime_log.err
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas       656 Jun  2 07:30 0GiKDmr8We7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxMcKDmAZwTRo.diag
[2025-06-02 07:30:18] -rw-r--r--. 1 boincer umatlas     21179 Jun  2 07:30 stderr.txt
[2025-06-02 07:30:18] HITS file was successfully produced:
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas 199783753 Jun  2 07:29 shared/HITS.pool.root.1
[2025-06-02 07:30:18]  *** Contents of shared directory: ***
[2025-06-02 07:30:18] total 416148
[2025-06-02 07:30:18] -rw-r--r--. 2 boincer umatlas 224287839 Jun  2 03:55 ATLAS.root_0
[2025-06-02 07:30:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 03:55 start_atlas.sh
[2025-06-02 07:30:18] -rw-r--r--. 2 boincer umatlas    508878 Jun  2 03:55 input.tar.gz
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas 199783753 Jun  2 07:29 HITS.pool.root.1
[2025-06-02 07:30:18] -rw-------. 1 boincer umatlas   1525760 Jun  2 07:30 result.tar.gz
07:30:20 (392426): run_atlas exited; CPU time 69179.316815
07:30:20 (392426): called boinc_finish(0)

</stderr_txt>
]]>

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