Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:22:43 (39074): wrapper (7.7.26015): starting
03:22:43 (39074): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 03:22:43] Arguments: --nthreads 8
[2025-06-02 03:22:43] Threads: 8
[2025-06-02 03:22:43] Checking for CVMFS
[2025-06-02 03:22:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 03:22:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 03:22:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 03:22:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 03:22:44] 2.11.2.0 4919 269606 573552 146698 0 18 13486531 18432000 200 130560 0 123155659 98.820 324583403 38711 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-02 03:22:44] CVMFS is ok
[2025-06-02 03:22:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 03:22:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 03:22:44] Further information can be found at the LHC@home message board.
[2025-06-02 03:22:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 03:22:44] Checking for apptainer binary...
[2025-06-02 03:22:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 03:22:44] Running /usr/bin/apptainer --version
[2025-06-02 03:22:44] apptainer version 1.3.2-1.el7
[2025-06-02 03:22:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 03:22:44] c-211-32.aglt2.org
[2025-06-02 03:22:44] apptainer works
[2025-06-02 03:22:44] Set ATHENA_PROC_NUMBER=8
[2025-06-02 03:22:44] Set ATHENA_CORE_NUMBER=8
[2025-06-02 03:22:44] Starting ATLAS job with PandaID=6668190656
[2025-06-02 03:22:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 06:32:10]  *** The last 200 lines of the pilot log: ***
[2025-06-02 06:32:10] 2025-06-02 10:31:54,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 06:32:10] 2025-06-02 10:31:54,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 06:32:10] 2025-06-02 10:31:54,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 06:32:10] 2025-06-02 10:31:54,882 | INFO     | fitting pss+swap vs Time
[2025-06-02 06:32:10] 2025-06-02 10:31:54,883 | INFO     | sum of square deviations: 1995283922.5
[2025-06-02 06:32:10] 2025-06-02 10:31:54,885 | INFO     | sum of deviations: 22485249833.000008
[2025-06-02 06:32:10] 2025-06-02 10:31:54,885 | INFO     | mean x: 1748854637.5
[2025-06-02 06:32:10] 2025-06-02 10:31:54,885 | INFO     | mean y: 2478778.311827957
[2025-06-02 06:32:10] 2025-06-02 10:31:54,886 | INFO     | -- intersect: -19705710618.873154
[2025-06-02 06:32:10] 2025-06-02 10:31:54,886 | INFO     | intersect: -19705710618.873154
[2025-06-02 06:32:10] 2025-06-02 10:31:54,887 | INFO     | chi2: 1.3112644035652359
[2025-06-02 06:32:10] 2025-06-02 10:31:54,887 | INFO     | sum of square deviations: 1838657730.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,889 | INFO     | sum of deviations: 21577764056.999996
[2025-06-02 06:32:10] 2025-06-02 10:31:54,889 | INFO     | mean x: 1748854485.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,889 | INFO     | mean y: 2477898.1657458562
[2025-06-02 06:32:10] 2025-06-02 10:31:54,890 | INFO     | -- intersect: -20521390591.135002
[2025-06-02 06:32:10] 2025-06-02 10:31:54,890 | INFO     | intersect: -20521390591.135002
[2025-06-02 06:32:10] 2025-06-02 10:31:54,890 | INFO     | chi2: 1.3120531202110977
[2025-06-02 06:32:10] 2025-06-02 10:31:54,891 | INFO     | current chi2=1.3120531202110977 (change=-0.06014932180857731 %)
[2025-06-02 06:32:10] 2025-06-02 10:31:54,891 | INFO     | right removable region: 180
[2025-06-02 06:32:10] 2025-06-02 10:31:54,891 | INFO     | sum of square deviations: 1838657730.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,893 | INFO     | sum of deviations: -3994353200.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,893 | INFO     | mean x: 1748854790.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,894 | INFO     | mean y: 2504265.1215469614
[2025-06-02 06:32:10] 2025-06-02 10:31:54,894 | INFO     | -- intersect: 3801766962.4653463
[2025-06-02 06:32:10] 2025-06-02 10:31:54,894 | INFO     | intersect: 3801766962.4653463
[2025-06-02 06:32:10] 2025-06-02 10:31:54,894 | INFO     | chi2: 0.028674537631591963
[2025-06-02 06:32:10] 2025-06-02 10:31:54,895 | INFO     | current chi2=0.028674537631591963 (change=97.81321466870999 %)
[2025-06-02 06:32:10] 2025-06-02 10:31:54,895 | INFO     | sum of square deviations: 1690450300.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,897 | INFO     | sum of deviations: -6344685517.999999
[2025-06-02 06:32:10] 2025-06-02 10:31:54,897 | INFO     | mean x: 1748854942.5
[2025-06-02 06:32:10] 2025-06-02 10:31:54,897 | INFO     | mean y: 2506643.909090909
[2025-06-02 06:32:10] 2025-06-02 10:31:54,897 | INFO     | -- intersect: 6566399487.586584
[2025-06-02 06:32:10] 2025-06-02 10:31:54,898 | INFO     | intersect: 6566399487.586584
[2025-06-02 06:32:10] 2025-06-02 10:31:54,898 | INFO     | chi2: 0.009657675605256447
[2025-06-02 06:32:10] 2025-06-02 10:31:54,898 | INFO     | current chi2=0.009657675605256447 (change=66.31968149116318 %)
[2025-06-02 06:32:10] 2025-06-02 10:31:54,899 | INFO     | sum of square deviations: 1550429070.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,900 | INFO     | sum of deviations: -6141014508.999999
[2025-06-02 06:32:10] 2025-06-02 10:31:54,900 | INFO     | mean x: 1748855095.0
[2025-06-02 06:32:10] 2025-06-02 10:31:54,901 | INFO     | mean y: 2506417.3333333335
[2025-06-02 06:32:10] 2025-06-02 10:31:54,901 | INFO     | -- intersect: 6929456330.968255
[2025-06-02 06:32:10] 2025-06-02 10:31:54,901 | INFO     | intersect: 6929456330.968255
[2025-06-02 06:32:10] 2025-06-02 10:31:54,902 | INFO     | chi2: 0.009444324959986887
[2025-06-02 06:32:10] 2025-06-02 10:31:54,902 | INFO     | current chi2=0.009444324959986887 (change=2.2091303745327453 %)
[2025-06-02 06:32:10] 2025-06-02 10:31:54,902 | INFO     | left removable region: 30
[2025-06-02 06:32:10] 2025-06-02 10:31:54,902 | INFO     | sum of square deviations: 1046484737.5
[2025-06-02 06:32:10] 2025-06-02 10:31:54,904 | INFO     | sum of deviations: -4071271241.5000005
[2025-06-02 06:32:10] 2025-06-02 10:31:54,904 | INFO     | mean x: 1748855369.5
[2025-06-02 06:32:10] 2025-06-02 10:31:54,904 | INFO     | mean y: 2503438.2066666665
[2025-06-02 06:32:10] 2025-06-02 10:31:54,904 | INFO     | -- intersect: 6806295520.6384535
[2025-06-02 06:32:10] 2025-06-02 10:31:54,904 | INFO     | intersect: 6806295520.6384535
[2025-06-02 06:32:10] 2025-06-02 10:31:54,905 | INFO     | chi2: 0.00851681445033799
[2025-06-02 06:32:10] 2025-06-02 10:31:54,905 | INFO     | -- intersect: 6806295520.6384535
[2025-06-02 06:32:10] 2025-06-02 10:31:54,905 | INFO     | current memory leak: -3.89 B/s (using 150 data points, chi2=0.01)
[2025-06-02 06:32:10] 2025-06-02 10:31:54,906 | INFO     | ..............................
[2025-06-02 06:32:10] 2025-06-02 10:31:54,906 | INFO     | . Timing measurements:
[2025-06-02 06:32:10] 2025-06-02 10:31:54,906 | INFO     | . get job = 0 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,906 | INFO     | . initial setup = 2 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,907 | INFO     | . payload setup = 5 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,907 | INFO     | . stage-in = 0 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,907 | INFO     | . payload execution = 11311 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,907 | INFO     | . stage-out = 2 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,907 | INFO     | . log creation = 0 s
[2025-06-02 06:32:10] 2025-06-02 10:31:54,907 | INFO     | ..............................
[2025-06-02 06:32:10] 2025-06-02 10:31:55,317 | INFO     | 
[2025-06-02 06:32:10] 2025-06-02 10:31:55,317 | INFO     | job summary report
[2025-06-02 06:32:10] 2025-06-02 10:31:55,317 | INFO     | --------------------------------------------------
[2025-06-02 06:32:10] 2025-06-02 10:31:55,317 | INFO     | PanDA job id: 6668190656
[2025-06-02 06:32:10] 2025-06-02 10:31:55,317 | INFO     | task id: 44871837
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | errors: (none)
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | pilot state: finished 
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | transexitcode: 0
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | exeerrorcode: 0
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | exeerrordiag: 
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | exitcode: 0
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | exitmsg: OK
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | cpuconsumptiontime: 87413 s
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | nevents: 400
[2025-06-02 06:32:10] 2025-06-02 10:31:55,318 | INFO     | neventsw: 0
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | pid: 30072
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | pgrp: 30072
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | corecount: 8
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | event service: False
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | sizes: {0: 2405012, 1: 2405211, 4: 2405417, 11: 2405445, 11320: 2434590, 11323: 2443531, 11324: 2443715, 11329: 2443885}
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | --------------------------------------------------
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | 
[2025-06-02 06:32:10] 2025-06-02 10:31:55,319 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-02 06:32:10] 2025-06-02 10:31:55,340 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | job 6668190656 has completed (purged errors)
[2025-06-02 06:32:10] 2025-06-02 10:31:55,342 | INFO     | overall cleanup function is called
[2025-06-02 06:32:10] 2025-06-02 10:31:56,350 | INFO     | --- collectZombieJob: --- 10, [30072]
[2025-06-02 06:32:10] 2025-06-02 10:31:56,350 | INFO     | zombie collector waiting for pid 30072
[2025-06-02 06:32:10] 2025-06-02 10:31:56,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 06:32:10] 2025-06-02 10:31:56,351 | INFO     | collected zombie processes
[2025-06-02 06:32:10] 2025-06-02 10:31:56,351 | INFO     | will attempt to kill all subprocesses of pid=30072
[2025-06-02 06:32:10] 2025-06-02 10:31:56,514 | INFO     | process IDs to be killed: [30072] (in reverse order)
[2025-06-02 06:32:10] 2025-06-02 10:31:56,577 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 06:32:10] 2025-06-02 10:31:56,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 06:32:10] 2025-06-02 10:31:56,580 | INFO     | did not find any defunct processes belonging to 30072
[2025-06-02 06:32:10] 2025-06-02 10:31:56,583 | INFO     | did not find any defunct processes belonging to 30072
[2025-06-02 06:32:10] 2025-06-02 10:31:56,583 | INFO     | ready for new job
[2025-06-02 06:32:10] 2025-06-02 10:31:56,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 06:32:10] 2025-06-02 10:31:56,584 | INFO     | **************************************
[2025-06-02 06:32:10] 2025-06-02 10:31:56,585 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 06:32:10] 2025-06-02 10:31:56,585 | INFO     | **************************************
[2025-06-02 06:32:10] 2025-06-02 10:31:56,585 | INFO     | 
[2025-06-02 06:32:10] 2025-06-02 10:31:56,586 | INFO     | architecture information:
[2025-06-02 06:32:10] 2025-06-02 10:31:56,586 | INFO     | executing command: cat /etc/os-release
[2025-06-02 06:32:10] 2025-06-02 10:31:56,596 | INFO     | cat /etc/os-release:
[2025-06-02 06:32:10] NAME="CentOS Linux"
[2025-06-02 06:32:10] VERSION="7 (Core)"
[2025-06-02 06:32:10] ID="centos"
[2025-06-02 06:32:10] ID_LIKE="rhel fedora"
[2025-06-02 06:32:10] VERSION_ID="7"
[2025-06-02 06:32:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 06:32:10] ANSI_COLOR="0;31"
[2025-06-02 06:32:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 06:32:10] HOME_URL="https://www.centos.org/"
[2025-06-02 06:32:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 06:32:10] 
[2025-06-02 06:32:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 06:32:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 06:32:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 06:32:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 06:32:10] 
[2025-06-02 06:32:10] 2025-06-02 10:31:56,596 | INFO     | **************************************
[2025-06-02 06:32:10] 2025-06-02 10:31:56,731 | INFO     | PID=456 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-02 06:32:10] 2025-06-02 10:31:57,099 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-02 06:32:10] 2025-06-02 10:31:57,118 | INFO     | sufficient remaining disk space (56538169344 B)
[2025-06-02 06:32:10] 2025-06-02 10:31:57,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 06:32:10] 2025-06-02 10:31:57,119 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 06:32:10] 2025-06-02 10:31:57,119 | INFO     | update_server=False
[2025-06-02 06:32:10] 2025-06-02 10:31:57,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 06:32:10] 2025-06-02 10:31:57,120 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 06:32:10] 2025-06-02 10:31:57,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 06:32:10] 2025-06-02 10:31:57,121 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 06:32:10] 2025-06-02 10:31:57,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 06:32:10] 2025-06-02 10:31:57,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 06:32:10] 2025-06-02 10:31:57,129 | INFO     | all job control threads have been joined
[2025-06-02 06:32:10] 2025-06-02 10:31:57,154 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-02 06:32:10] 2025-06-02 10:31:57,154 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-02 06:32:10] 2025-06-02 10:31:57,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 06:32:10] 2025-06-02 10:31:57,155 | INFO     | will abort loop
[2025-06-02 06:32:10] 2025-06-02 10:31:57,707 | INFO     | all data control threads have been joined
[2025-06-02 06:32:10] 2025-06-02 10:31:58,120 | INFO     | all payload control threads have been joined
[2025-06-02 06:32:10] 2025-06-02 10:31:58,125 | INFO     | [job] retrieve thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,134 | INFO     | [job] control thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,160 | INFO     | [job] job monitor thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,256 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,476 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,486 | INFO     | [payload] validate_post thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,508 | INFO     | [data] copytool_in thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:58,712 | INFO     | [data] control thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:59,125 | INFO     | [payload] control thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:59,127 | INFO     | [data] copytool_out thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:59,171 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:59,270 | INFO     | [payload] failed_post thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:59,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:31:59,449 | INFO     | [job] validate thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:32:00,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 06:32:10] 2025-06-02 10:32:00,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 06:32:10] 2025-06-02 10:32:01,022 | INFO     | [job] queue monitor thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:32:04,499 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 06:32:10] 2025-06-02 10:32:05,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140004945229632)>', '<ExcThread(monitor, started 140004516947712)>']
[2025-06-02 06:32:10] 2025-06-02 10:32:05,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 06:32:10] 2025-06-02 10:32:05,163 | INFO     | [monitor] control thread has ended
[2025-06-02 06:32:10] 2025-06-02 10:32:10,150 | INFO     | all workflow threads have been joined
[2025-06-02 06:32:10] 2025-06-02 10:32:10,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 06:32:10] 2025-06-02 10:32:10,151 | INFO     | traces error code: 0
[2025-06-02 06:32:10] 2025-06-02 10:32:10,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 06:32:10] 2025-06-02 10:32:10,264 [wrapper] ==== pilot stdout END ====
[2025-06-02 06:32:10] 2025-06-02 10:32:10,269 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 06:32:10] 2025-06-02 10:32:10,273 [wrapper] pilotpid: 456
[2025-06-02 06:32:10] 2025-06-02 10:32:10,276 [wrapper] Pilot exit status: 0
[2025-06-02 06:32:10] 2025-06-02 10:32:10,289 [wrapper] pandaids: 6668190656
[2025-06-02 06:32:10] 2025-06-02 10:32:10,336 [wrapper] cleanup supervisor_pilot 26272 458
[2025-06-02 06:32:10] 2025-06-02 10:32:10,341 [wrapper] Test setup, not cleaning
[2025-06-02 06:32:10] 2025-06-02 10:32:10,345 [wrapper] apfmon messages muted
[2025-06-02 06:32:10] 2025-06-02 10:32:10,349 [wrapper] ==== wrapper stdout END ====
[2025-06-02 06:32:10] 2025-06-02 10:32:10,352 [wrapper] ==== wrapper stderr END ====
[2025-06-02 06:32:10]  *** Error codes and diagnostics ***
[2025-06-02 06:32:10]     "exeErrorCode": 0,
[2025-06-02 06:32:10]     "exeErrorDiag": "",
[2025-06-02 06:32:10]     "pilotErrorCode": 0,
[2025-06-02 06:32:10]     "pilotErrorDiag": "",
[2025-06-02 06:32:10]  *** Listing of results directory ***
[2025-06-02 06:32:10] total 417732
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas    495897 May 28 01:33 pilot3.tar.gz
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas      5111 May 28 01:35 queuedata.json
[2025-06-02 06:32:10] -rwx------ 1 boincer umatlas     37140 May 28 01:37 runpilot2-wrapper.sh
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas       100 Jun  2 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 06:32:10] -rwxr-xr-x 1 boincer umatlas      7986 Jun  2 03:22 run_atlas
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas       105 Jun  2 03:22 job.xml
[2025-06-02 06:32:10] -rw-r--r-- 2 boincer umatlas 222959818 Jun  2 03:22 EVNT.44871834._001392.pool.root.1
[2025-06-02 06:32:10] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 03:22 start_atlas.sh
[2025-06-02 06:32:10] drwxrwx--x 2 boincer umatlas      4096 Jun  2 03:22 shared
[2025-06-02 06:32:10] -rw-r--r-- 2 boincer umatlas    508886 Jun  2 03:22 input.tar.gz
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas         0 Jun  2 03:22 boinc_lockfile
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas      2558 Jun  2 03:22 pandaJob.out
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas    988196 Jun  2 03:22 agis_schedconf.cvmfs.json
[2025-06-02 06:32:10] drwx------ 4 boincer umatlas      4096 Jun  2 03:22 pilot3
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas      6036 Jun  2 06:28 init_data.xml
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas 198088990 Jun  2 06:31 HITS.44871837._079460.pool.root.1
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas       530 Jun  2 06:31 boinc_task_state.xml
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas        95 Jun  2 06:31 pilot_heartbeat.json
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas      1048 Jun  2 06:31 memory_monitor_summary.json
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas   1603667 Jun  2 06:31 agis_ddmendpoints.agis.ALL.json
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas    376411 Jun  2 06:31 log.44871837._079460.job.log.tgz.1
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas      7736 Jun  2 06:31 heartbeat.json
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas      8192 Jun  2 06:32 boinc_mmap_file
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas        28 Jun  2 06:32 wrapper_checkpoint.txt
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas      4978 Jun  2 06:32 pilotlog.txt
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas   1061710 Jun  2 06:32 log.44871837._079460.job.log.1
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas       357 Jun  2 06:32 output.list
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas       620 Jun  2 06:32 runtime_log
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas   1454080 Jun  2 06:32 result.tar.gz
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas       660 Jun  2 06:32 wmoLDm8eOe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9MbKDmeOEhVo.diag
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas      8660 Jun  2 06:32 runtime_log.err
[2025-06-02 06:32:10] -rw-r--r-- 1 boincer umatlas     20949 Jun  2 06:32 stderr.txt
[2025-06-02 06:32:10] HITS file was successfully produced:
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas 198088990 Jun  2 06:31 shared/HITS.pool.root.1
[2025-06-02 06:32:10]  *** Contents of shared directory: ***
[2025-06-02 06:32:10] total 413124
[2025-06-02 06:32:10] -rw-r--r-- 2 boincer umatlas 222959818 Jun  2 03:22 ATLAS.root_0
[2025-06-02 06:32:10] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 03:22 start_atlas.sh
[2025-06-02 06:32:10] -rw-r--r-- 2 boincer umatlas    508886 Jun  2 03:22 input.tar.gz
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas 198088990 Jun  2 06:31 HITS.pool.root.1
[2025-06-02 06:32:10] -rw------- 1 boincer umatlas   1454080 Jun  2 06:32 result.tar.gz
06:32:12 (39074): run_atlas exited; CPU time 87643.247578
06:32:12 (39074): called boinc_finish(0)

</stderr_txt>
]]>

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