Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:53 (16184): wrapper (7.7.26015): starting
08:25:53 (16184): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 08:25:53] Arguments: --nthreads 8
[2025-06-02 08:25:53] Threads: 8
[2025-06-02 08:25:53] Checking for CVMFS
[2025-06-02 08:25:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 08:25:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 08:25:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 08:25:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 08:25:55] 2.11.2.0 14280 29965 95604 146695 3 170 14231281 25165825 4632 130560 0 15708511 99.792 15906496 1808 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 08:25:55] CVMFS is ok
[2025-06-02 08:25:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 08:25:55] Checking for apptainer binary...
[2025-06-02 08:25:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 08:25:55] Running /usr/bin/apptainer --version
[2025-06-02 08:25:55] apptainer version 1.3.2-1.el7
[2025-06-02 08:25:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 08:53:05] cg-vwn302.simple-grid.lan
[2025-06-02 08:53:05] apptainer works
[2025-06-02 08:53:05] Set ATHENA_PROC_NUMBER=8
[2025-06-02 08:53:05] Set ATHENA_CORE_NUMBER=8
[2025-06-02 08:53:05] Starting ATLAS job with PandaID=6666120910
[2025-06-02 08:53:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 14:10:24]  *** The last 200 lines of the pilot log: ***
[2025-06-02 14:10:24] 2025-06-02 11:58:53,576 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6666120910/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,577 | INFO     | extracted standard info from prmon json
[2025-06-02 14:10:24] 2025-06-02 11:58:53,577 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 14:10:24] 2025-06-02 11:58:53,577 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 14:10:24] 2025-06-02 11:58:53,578 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 14:10:24] 2025-06-02 11:58:53,578 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 14:10:24] 2025-06-02 11:58:53,584 | INFO     | fitting pss+swap vs Time
[2025-06-02 14:10:24] 2025-06-02 11:58:53,585 | INFO     | sum of square deviations: 8205826414.5
[2025-06-02 14:10:24] 2025-06-02 11:58:53,587 | INFO     | sum of deviations: 30111243705.999996
[2025-06-02 14:10:24] 2025-06-02 11:58:53,588 | INFO     | mean x: 1748856346.5
[2025-06-02 14:10:24] 2025-06-02 11:58:53,588 | INFO     | mean y: 2478232.33557047
[2025-06-02 14:10:24] 2025-06-02 11:58:53,588 | INFO     | -- intersect: -6414942390.064347
[2025-06-02 14:10:24] 2025-06-02 11:58:53,588 | INFO     | intersect: -6414942390.064347
[2025-06-02 14:10:24] 2025-06-02 11:58:53,589 | INFO     | chi2: 2.6171939387487133
[2025-06-02 14:10:24] 2025-06-02 11:58:53,589 | INFO     | sum of square deviations: 7799669962.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,592 | INFO     | sum of deviations: 48973597094.000046
[2025-06-02 14:10:24] 2025-06-02 11:58:53,592 | INFO     | mean x: 1748856194.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,592 | INFO     | mean y: 2485213.747440273
[2025-06-02 14:10:24] 2025-06-02 11:58:53,592 | INFO     | -- intersect: -10978463856.864323
[2025-06-02 14:10:24] 2025-06-02 11:58:53,592 | INFO     | intersect: -10978463856.864323
[2025-06-02 14:10:24] 2025-06-02 11:58:53,593 | INFO     | chi2: 1.8492733153516723
[2025-06-02 14:10:24] 2025-06-02 11:58:53,593 | INFO     | current chi2=1.8492733153516723 (change=29.341372529854848 %)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,593 | INFO     | sum of square deviations: 7407141672.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,596 | INFO     | sum of deviations: 47784476025.99999
[2025-06-02 14:10:24] 2025-06-02 11:58:53,596 | INFO     | mean x: 1748856041.5
[2025-06-02 14:10:24] 2025-06-02 11:58:53,596 | INFO     | mean y: 2484751.722222222
[2025-06-02 14:10:24] 2025-06-02 11:58:53,596 | INFO     | -- intersect: -11279622880.143524
[2025-06-02 14:10:24] 2025-06-02 11:58:53,596 | INFO     | intersect: -11279622880.143524
[2025-06-02 14:10:24] 2025-06-02 11:58:53,597 | INFO     | chi2: 1.8500275267333162
[2025-06-02 14:10:24] 2025-06-02 11:58:53,597 | INFO     | current chi2=1.8500275267333162 (change=-0.04078420292894677 %)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,597 | INFO     | right removable region: 287
[2025-06-02 14:10:24] 2025-06-02 11:58:53,598 | INFO     | sum of square deviations: 7799669962.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,600 | INFO     | sum of deviations: -23319926985.000004
[2025-06-02 14:10:24] 2025-06-02 11:58:53,600 | INFO     | mean x: 1748856499.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,601 | INFO     | mean y: 2498163.8191126278
[2025-06-02 14:10:24] 2025-06-02 11:58:53,601 | INFO     | -- intersect: 5231335545.736367
[2025-06-02 14:10:24] 2025-06-02 11:58:53,601 | INFO     | intersect: 5231335545.736367
[2025-06-02 14:10:24] 2025-06-02 11:58:53,601 | INFO     | chi2: 0.8848588060731876
[2025-06-02 14:10:24] 2025-06-02 11:58:53,601 | INFO     | current chi2=0.8848588060731876 (change=66.19055267657234 %)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,602 | INFO     | sum of square deviations: 7407141672.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,604 | INFO     | sum of deviations: -22028513553.000004
[2025-06-02 14:10:24] 2025-06-02 11:58:53,604 | INFO     | mean x: 1748856651.5
[2025-06-02 14:10:24] 2025-06-02 11:58:53,605 | INFO     | mean y: 2497641.9444444445
[2025-06-02 14:10:24] 2025-06-02 11:58:53,605 | INFO     | -- intersect: 5203520405.617319
[2025-06-02 14:10:24] 2025-06-02 11:58:53,605 | INFO     | intersect: 5203520405.617319
[2025-06-02 14:10:24] 2025-06-02 11:58:53,605 | INFO     | chi2: 0.8700602763491334
[2025-06-02 14:10:24] 2025-06-02 11:58:53,605 | INFO     | current chi2=0.8700602763491334 (change=1.6724170706654133 %)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,605 | INFO     | left removable region: 20
[2025-06-02 14:10:24] 2025-06-02 11:58:53,606 | INFO     | sum of square deviations: 5902093918.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,609 | INFO     | sum of deviations: 13651337559.000004
[2025-06-02 14:10:24] 2025-06-02 11:58:53,609 | INFO     | mean x: 1748856621.0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,609 | INFO     | mean y: 2497592.561797753
[2025-06-02 14:10:24] 2025-06-02 11:58:53,609 | INFO     | -- intersect: -4042546828.4956737
[2025-06-02 14:10:24] 2025-06-02 11:58:53,610 | INFO     | intersect: -4042546828.4956737
[2025-06-02 14:10:24] 2025-06-02 11:58:53,610 | INFO     | chi2: 0.0017715863189715407
[2025-06-02 14:10:24] 2025-06-02 11:58:53,610 | INFO     | -- intersect: -4042546828.4956737
[2025-06-02 14:10:24] 2025-06-02 11:58:53,610 | INFO     | current memory leak: 2.31 B/s (using 267 data points, chi2=0.00)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,612 | INFO     | ..............................
[2025-06-02 14:10:24] 2025-06-02 11:58:53,612 | INFO     | . Timing measurements:
[2025-06-02 14:10:24] 2025-06-02 11:58:53,612 | INFO     | . get job = 0 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,612 | INFO     | . initial setup = 2 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,613 | INFO     | . payload setup = 15 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,613 | INFO     | . stage-in = 0 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,613 | INFO     | . payload execution = 18165 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,613 | INFO     | . stage-out = 3 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,613 | INFO     | . log creation = 1 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,613 | INFO     | ..............................
[2025-06-02 14:10:24] 2025-06-02 11:58:53,775 | INFO     | 
[2025-06-02 14:10:24] 2025-06-02 11:58:53,776 | INFO     | job summary report
[2025-06-02 14:10:24] 2025-06-02 11:58:53,776 | INFO     | --------------------------------------------------
[2025-06-02 14:10:24] 2025-06-02 11:58:53,776 | INFO     | PanDA job id: 6666120910
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | task id: 44871837
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | errors: (none)
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | pilot state: finished 
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | transexitcode: 0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | exeerrorcode: 0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | exeerrordiag: 
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | exitcode: 0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | exitmsg: OK
[2025-06-02 14:10:24] 2025-06-02 11:58:53,777 | INFO     | cpuconsumptiontime: 68732 s
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | nevents: 400
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | neventsw: 0
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | pid: 12641
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | pgrp: 12641
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | corecount: 8
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | event service: False
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405496, 22: 2405496, 18185: 2437067, 18189: 2446008, 18192: 2446192, 18284: 2446362}
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | --------------------------------------------------
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | 
[2025-06-02 14:10:24] 2025-06-02 11:58:53,778 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-02 14:10:24] 2025-06-02 11:58:54,159 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,159 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,160 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | job 6666120910 has completed (purged errors)
[2025-06-02 14:10:24] 2025-06-02 11:58:54,161 | INFO     | overall cleanup function is called
[2025-06-02 14:10:24] 2025-06-02 11:58:55,177 | INFO     | --- collectZombieJob: --- 10, [12641]
[2025-06-02 14:10:24] 2025-06-02 11:58:55,178 | INFO     | zombie collector waiting for pid 12641
[2025-06-02 14:10:24] 2025-06-02 11:58:55,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 14:10:24] 2025-06-02 11:58:55,178 | INFO     | collected zombie processes
[2025-06-02 14:10:24] 2025-06-02 11:58:55,178 | INFO     | will attempt to kill all subprocesses of pid=12641
[2025-06-02 14:10:24] 2025-06-02 11:58:55,329 | INFO     | process IDs to be killed: [12641] (in reverse order)
[2025-06-02 14:10:24] 2025-06-02 11:58:55,943 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 14:10:24] 2025-06-02 11:58:55,944 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 14:10:24] 2025-06-02 11:58:55,947 | INFO     | did not find any defunct processes belonging to 12641
[2025-06-02 14:10:24] 2025-06-02 11:58:55,950 | INFO     | did not find any defunct processes belonging to 12641
[2025-06-02 14:10:24] 2025-06-02 11:58:55,951 | INFO     | ready for new job
[2025-06-02 14:10:24] 2025-06-02 11:58:55,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 14:10:24] 2025-06-02 11:58:55,957 | INFO     | **************************************
[2025-06-02 14:10:24] 2025-06-02 11:58:55,958 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 14:10:24] 2025-06-02 11:58:55,958 | INFO     | **************************************
[2025-06-02 14:10:24] 2025-06-02 11:58:55,958 | INFO     | 
[2025-06-02 14:10:24] 2025-06-02 11:58:55,958 | INFO     | pilot is running in a VM
[2025-06-02 14:10:24] 2025-06-02 11:58:55,958 | INFO     | architecture information:
[2025-06-02 14:10:24] 2025-06-02 11:58:55,969 | INFO     | executing command: cat /etc/os-release
[2025-06-02 14:10:24] 2025-06-02 11:58:56,238 | INFO     | cat /etc/os-release:
[2025-06-02 14:10:24] NAME="CentOS Linux"
[2025-06-02 14:10:24] VERSION="7 (Core)"
[2025-06-02 14:10:24] ID="centos"
[2025-06-02 14:10:24] ID_LIKE="rhel fedora"
[2025-06-02 14:10:24] VERSION_ID="7"
[2025-06-02 14:10:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 14:10:24] ANSI_COLOR="0;31"
[2025-06-02 14:10:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 14:10:24] HOME_URL="https://www.centos.org/"
[2025-06-02 14:10:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 14:10:24] 
[2025-06-02 14:10:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 14:10:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 14:10:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 14:10:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 14:10:24] 
[2025-06-02 14:10:24] 2025-06-02 11:58:56,239 | INFO     | **************************************
[2025-06-02 14:10:24] 2025-06-02 11:58:56,743 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-02 14:10:24] 2025-06-02 11:58:57,004 | INFO     | sufficient remaining disk space (497057529856 B)
[2025-06-02 14:10:24] 2025-06-02 11:58:57,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 14:10:24] 2025-06-02 11:58:57,005 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 14:10:24] 2025-06-02 11:58:57,005 | INFO     | update_server=False
[2025-06-02 14:10:24] 2025-06-02 11:58:57,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 14:10:24] 2025-06-02 11:58:57,048 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 14:10:24] 2025-06-02 11:58:57,048 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 14:10:24] 2025-06-02 11:58:57,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 14:10:24] 2025-06-02 11:58:57,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 14:10:24] 2025-06-02 11:58:57,180 | INFO     | aborting loop
[2025-06-02 14:10:24] 2025-06-02 11:58:57,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 14:10:24] 2025-06-02 11:58:57,659 | INFO     | all data control threads have been joined
[2025-06-02 14:10:24] 2025-06-02 11:58:57,670 | INFO     | all payload control threads have been joined
[2025-06-02 14:10:24] 2025-06-02 11:58:57,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 14:10:24] 2025-06-02 11:58:58,012 | INFO     | [job] retrieve thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,177 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,185 | INFO     | [job] job monitor thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,411 | INFO     | [job] validate thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,473 | INFO     | all job control threads have been joined
[2025-06-02 14:10:24] 2025-06-02 11:58:58,649 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,666 | INFO     | [data] control thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,669 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,677 | INFO     | [payload] control thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:58,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 14:10:24] 2025-06-02 11:58:58,804 | INFO     | [data] copytool_in thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:59,219 | INFO     | [payload] failed_post thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:59,298 | INFO     | [payload] validate_post thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:59,434 | INFO     | [data] copytool_out thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:59,480 | INFO     | [job] control thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:58:59,798 | INFO     | [job] queue monitor thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:59:01,915 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 14:10:24] 2025-06-02 11:59:03,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323590707008)>', '<ExcThread(monitor, started 140322998830848)>']
[2025-06-02 14:10:24] 2025-06-02 11:59:03,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 14:10:24] 2025-06-02 11:59:03,085 | INFO     | [monitor] control thread has ended
[2025-06-02 14:10:24] 2025-06-02 11:59:08,092 | INFO     | all workflow threads have been joined
[2025-06-02 14:10:24] 2025-06-02 11:59:08,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 14:10:24] 2025-06-02 11:59:08,093 | INFO     | traces error code: 0
[2025-06-02 14:10:24] 2025-06-02 11:59:08,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 14:10:24] 2025-06-02 11:59:08,611 [wrapper] ==== pilot stdout END ====
[2025-06-02 14:10:24] 2025-06-02 11:59:08,684 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 14:10:24] 2025-06-02 11:59:08,775 [wrapper] pilotpid: 4132
[2025-06-02 14:10:24] 2025-06-02 11:59:08,885 [wrapper] Pilot exit status: 0
[2025-06-02 14:10:24] 2025-06-02 11:59:09,363 [wrapper] pandaids: 6666120910
[2025-06-02 14:10:24] 2025-06-02 11:59:10,514 [wrapper] cleanup supervisor_pilot 10117 4133
[2025-06-02 14:10:24] 2025-06-02 11:59:10,634 [wrapper] Test setup, not cleaning
[2025-06-02 14:10:24] 2025-06-02 11:59:10,743 [wrapper] apfmon messages muted
[2025-06-02 14:10:24] 2025-06-02 11:59:10,846 [wrapper] ==== wrapper stdout END ====
[2025-06-02 14:10:24] 2025-06-02 11:59:10,920 [wrapper] ==== wrapper stderr END ====
[2025-06-02 14:10:24]  *** Error codes and diagnostics ***
[2025-06-02 14:10:24]     "exeErrorCode": 0,
[2025-06-02 14:10:24]     "exeErrorDiag": "",
[2025-06-02 14:10:24]     "pilotErrorCode": 0,
[2025-06-02 14:10:24]     "pilotErrorDiag": "",
[2025-06-02 14:10:24]  *** Listing of results directory ***
[2025-06-02 14:10:24] total 426436
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc    495897 May 26 19:13 pilot3.tar.gz
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc      5111 May 26 19:35 queuedata.json
[2025-06-02 14:10:24] -rwx------. 1 boinc boinc     37140 May 26 19:36 runpilot2-wrapper.sh
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc       100 Jun  2 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 14:10:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 08:25 run_atlas
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc       105 Jun  2 08:25 job.xml
[2025-06-02 14:10:24] -rw-r--r--. 2 boinc boinc 227129335 Jun  2 08:25 EVNT.44871834._002167.pool.root.1
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc      6391 Jun  2 08:25 init_data.xml
[2025-06-02 14:10:24] -rw-r--r--. 2 boinc boinc     15093 Jun  2 08:25 start_atlas.sh
[2025-06-02 14:10:24] drwxrwx--x. 2 boinc boinc        68 Jun  2 08:25 shared
[2025-06-02 14:10:24] -rw-r--r--. 2 boinc boinc    508880 Jun  2 08:25 input.tar.gz
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc         0 Jun  2 08:25 boinc_lockfile
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc      2559 Jun  2 08:53 pandaJob.out
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc    988196 Jun  2 08:53 agis_schedconf.cvmfs.json
[2025-06-02 14:10:24] drwx------. 4 boinc boinc      4096 Jun  2 08:53 pilot3
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc 201763951 Jun  2 13:55 HITS.44871837._054571.pool.root.1
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc       531 Jun  2 13:56 boinc_task_state.xml
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc      1017 Jun  2 13:57 memory_monitor_summary.json
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc   1603667 Jun  2 13:57 agis_ddmendpoints.agis.ALL.json
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc    412920 Jun  2 13:57 log.44871837._054571.job.log.tgz.1
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc        95 Jun  2 13:57 pilot_heartbeat.json
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc      7682 Jun  2 13:58 heartbeat.json
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc      4416 Jun  2 13:59 pilotlog.txt
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc   1563970 Jun  2 13:59 log.44871837._054571.job.log.1
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc       357 Jun  2 13:59 output.list
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc       620 Jun  2 13:59 runtime_log
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc   1996800 Jun  2 13:59 result.tar.gz
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc      8659 Jun  2 13:59 runtime_log.err
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc       657 Jun  2 13:59 8VCNDmgvqd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGOXKDmzy9yam.diag
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc      8192 Jun  2 14:10 boinc_mmap_file
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc        28 Jun  2 14:10 wrapper_checkpoint.txt
[2025-06-02 14:10:24] -rw-r--r--. 1 boinc boinc     20507 Jun  2 14:10 stderr.txt
[2025-06-02 14:10:24] HITS file was successfully produced:
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc 201763951 Jun  2 13:55 shared/HITS.pool.root.1
[2025-06-02 14:10:24]  *** Contents of shared directory: ***
[2025-06-02 14:10:24] total 421312
[2025-06-02 14:10:24] -rw-r--r--. 2 boinc boinc 227129335 Jun  2 08:25 ATLAS.root_0
[2025-06-02 14:10:24] -rw-r--r--. 2 boinc boinc     15093 Jun  2 08:25 start_atlas.sh
[2025-06-02 14:10:24] -rw-r--r--. 2 boinc boinc    508880 Jun  2 08:25 input.tar.gz
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc 201763951 Jun  2 13:55 HITS.pool.root.1
[2025-06-02 14:10:24] -rw-------. 1 boinc boinc   1996800 Jun  2 13:59 result.tar.gz
14:10:26 (16184): run_atlas exited; CPU time 68944.546728
14:10:26 (16184): called boinc_finish(0)

</stderr_txt>
]]>

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