Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:49:48 (19747): wrapper (7.7.26015): starting
19:49:48 (19747): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 19:49:48] Arguments: --nthreads 8
[2025-06-02 19:49:48] Threads: 8
[2025-06-02 19:49:48] Checking for CVMFS
[2025-06-02 19:49:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 19:49:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 19:49:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 19:49:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 19:49:50] 2.11.2.0 14280 30649 94544 146714 0 19 14656200 25165824 4636 130560 0 16034730 99.796 16087038 1820 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-02 19:49:50] CVMFS is ok
[2025-06-02 19:49:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 19:49:50] Checking for apptainer binary...
[2025-06-02 19:49:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 19:49:50] Running /usr/bin/apptainer --version
[2025-06-02 19:49:50] apptainer version 1.3.2-1.el7
[2025-06-02 19:49:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 19:49:55] cg-vwn302.simple-grid.lan
[2025-06-02 19:49:55] apptainer works
[2025-06-02 19:49:55] Set ATHENA_PROC_NUMBER=8
[2025-06-02 19:49:55] Set ATHENA_CORE_NUMBER=8
[2025-06-02 19:49:55] Starting ATLAS job with PandaID=6665757194
[2025-06-02 19:49:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 03:40:41]  *** The last 200 lines of the pilot log: ***
[2025-06-03 03:40:41] 2025-06-02 23:10:49,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 03:40:41] 2025-06-02 23:10:49,821 | INFO     | fitting pss+swap vs Time
[2025-06-03 03:40:41] 2025-06-02 23:10:49,822 | INFO     | sum of square deviations: 8625843592.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,840 | INFO     | sum of deviations: 152743887943.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,841 | INFO     | mean x: 1748896521.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,841 | INFO     | mean y: 2441976.2673267326
[2025-06-03 03:40:41] 2025-06-02 23:10:49,841 | INFO     | -- intersect: -30966500525.226448
[2025-06-03 03:40:41] 2025-06-02 23:10:49,841 | INFO     | intersect: -30966500525.226448
[2025-06-03 03:40:41] 2025-06-02 23:10:49,842 | INFO     | chi2: 7.23249826042603
[2025-06-03 03:40:41] 2025-06-02 23:10:49,842 | INFO     | sum of square deviations: 8205826414.5
[2025-06-03 03:40:41] 2025-06-02 23:10:49,845 | INFO     | sum of deviations: 169928937263.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,846 | INFO     | mean x: 1748896368.5
[2025-06-03 03:40:41] 2025-06-02 23:10:49,846 | INFO     | mean y: 2448117.9261744968
[2025-06-03 03:40:41] 2025-06-02 23:10:49,846 | INFO     | -- intersect: -36214269890.7783
[2025-06-03 03:40:41] 2025-06-02 23:10:49,846 | INFO     | intersect: -36214269890.7783
[2025-06-03 03:40:41] 2025-06-02 23:10:49,846 | INFO     | chi2: 6.508338481740144
[2025-06-03 03:40:41] 2025-06-02 23:10:49,846 | INFO     | current chi2=6.508338481740144 (change=10.01258144296089 %)
[2025-06-03 03:40:41] 2025-06-02 23:10:49,847 | INFO     | right removable region: 297
[2025-06-03 03:40:41] 2025-06-02 23:10:49,847 | INFO     | sum of square deviations: 8205826414.5
[2025-06-03 03:40:41] 2025-06-02 23:10:49,850 | INFO     | sum of deviations: 45089592711.000015
[2025-06-03 03:40:41] 2025-06-02 23:10:49,850 | INFO     | mean x: 1748896673.5
[2025-06-03 03:40:41] 2025-06-02 23:10:49,850 | INFO     | mean y: 2481047.3288590605
[2025-06-03 03:40:41] 2025-06-02 23:10:49,851 | INFO     | -- intersect: -9607402798.42182
[2025-06-03 03:40:41] 2025-06-02 23:10:49,851 | INFO     | intersect: -9607402798.42182
[2025-06-03 03:40:41] 2025-06-02 23:10:49,851 | INFO     | chi2: 2.2849618054027006
[2025-06-03 03:40:41] 2025-06-02 23:10:49,851 | INFO     | current chi2=2.2849618054027006 (change=68.40701894246835 %)
[2025-06-03 03:40:41] 2025-06-02 23:10:49,852 | INFO     | sum of square deviations: 7799669962.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,864 | INFO     | sum of deviations: -8601285175.000002
[2025-06-03 03:40:41] 2025-06-02 23:10:49,864 | INFO     | mean x: 1748896826.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,864 | INFO     | mean y: 2501111.5597269624
[2025-06-03 03:40:41] 2025-06-02 23:10:49,864 | INFO     | -- intersect: 1931141735.5049326
[2025-06-03 03:40:41] 2025-06-02 23:10:49,865 | INFO     | intersect: 1931141735.5049326
[2025-06-03 03:40:41] 2025-06-02 23:10:49,875 | INFO     | chi2: 0.8354074504320117
[2025-06-03 03:40:41] 2025-06-02 23:10:49,875 | INFO     | current chi2=0.8354074504320117 (change=63.43888775485331 %)
[2025-06-03 03:40:41] 2025-06-02 23:10:49,876 | INFO     | sum of square deviations: 7407141672.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,878 | INFO     | sum of deviations: -9104473016.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,879 | INFO     | mean x: 1748896978.5
[2025-06-03 03:40:41] 2025-06-02 23:10:49,879 | INFO     | mean y: 2501277.777777778
[2025-06-03 03:40:41] 2025-06-02 23:10:49,879 | INFO     | -- intersect: 2152154417.08622
[2025-06-03 03:40:41] 2025-06-02 23:10:49,879 | INFO     | intersect: 2152154417.08622
[2025-06-03 03:40:41] 2025-06-02 23:10:49,879 | INFO     | chi2: 0.808891371400524
[2025-06-03 03:40:41] 2025-06-02 23:10:49,880 | INFO     | current chi2=0.808891371400524 (change=3.174029513116682 %)
[2025-06-03 03:40:41] 2025-06-02 23:10:49,880 | INFO     | left removable region: 30
[2025-06-03 03:40:41] 2025-06-02 23:10:49,880 | INFO     | sum of square deviations: 5902093918.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,882 | INFO     | sum of deviations: 6892731966.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,883 | INFO     | mean x: 1748897253.0
[2025-06-03 03:40:41] 2025-06-02 23:10:49,883 | INFO     | mean y: 2510076.4606741574
[2025-06-03 03:40:41] 2025-06-02 23:10:49,883 | INFO     | -- intersect: -2039931160.2398715
[2025-06-03 03:40:41] 2025-06-02 23:10:49,883 | INFO     | intersect: -2039931160.2398715
[2025-06-03 03:40:41] 2025-06-02 23:10:49,883 | INFO     | chi2: 0.0020060591707417854
[2025-06-03 03:40:41] 2025-06-02 23:10:49,883 | INFO     | -- intersect: -2039931160.2398715
[2025-06-03 03:40:41] 2025-06-02 23:10:49,884 | INFO     | current memory leak: 1.17 B/s (using 267 data points, chi2=0.00)
[2025-06-03 03:40:41] 2025-06-02 23:10:49,884 | INFO     | ..............................
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . Timing measurements:
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . get job = 0 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . initial setup = 4 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . payload setup = 178 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . stage-in = 0 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . payload execution = 18588 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . stage-out = 4 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | . log creation = 1 s
[2025-06-03 03:40:41] 2025-06-02 23:10:49,885 | INFO     | ..............................
[2025-06-03 03:40:41] 2025-06-02 23:10:50,030 | INFO     | 
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | job summary report
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | --------------------------------------------------
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | PanDA job id: 6665757194
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | task id: 44871837
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | errors: (none)
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | pilot state: finished 
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | transexitcode: 0
[2025-06-03 03:40:41] 2025-06-02 23:10:50,031 | INFO     | exeerrorcode: 0
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | exeerrordiag: 
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | exitcode: 0
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | exitmsg: OK
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | cpuconsumptiontime: 70240 s
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | nevents: 400
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | neventsw: 0
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | pid: 1883
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | pgrp: 1883
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | corecount: 8
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | event service: False
[2025-06-03 03:40:41] 2025-06-02 23:10:50,032 | INFO     | sizes: {0: 2404956, 1: 2405211, 2: 2405211, 12: 2405239, 23: 2405267, 34: 2405295, 45: 2405451, 55: 2405479, 66: 2405507, 77: 2405535, 88: 2405591, 94: 2406105, 98
[2025-06-03 03:40:41] 2025-06-02 23:10:50,033 | INFO     | --------------------------------------------------
[2025-06-03 03:40:41] 2025-06-02 23:10:50,033 | INFO     | 
[2025-06-03 03:40:41] 2025-06-02 23:10:50,033 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 03:40:41] 2025-06-02 23:10:50,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,473 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,473 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 03:40:41] 2025-06-02 23:10:50,476 | INFO     | job 6665757194 has completed (purged errors)
[2025-06-03 03:40:41] 2025-06-02 23:10:50,476 | INFO     | overall cleanup function is called
[2025-06-03 03:40:41] 2025-06-02 23:10:51,437 | INFO     | PID=25479 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 03:40:41] 2025-06-02 23:10:51,437 | INFO     | .. there are 9 such processes running
[2025-06-03 03:40:41] 2025-06-02 23:10:51,484 | INFO     | --- collectZombieJob: --- 10, [1883]
[2025-06-03 03:40:41] 2025-06-02 23:10:51,485 | INFO     | zombie collector waiting for pid 1883
[2025-06-03 03:40:41] 2025-06-02 23:10:51,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 03:40:41] 2025-06-02 23:10:51,485 | INFO     | collected zombie processes
[2025-06-03 03:40:41] 2025-06-02 23:10:51,485 | INFO     | will attempt to kill all subprocesses of pid=1883
[2025-06-03 03:40:41] 2025-06-02 23:10:51,627 | INFO     | process IDs to be killed: [1883] (in reverse order)
[2025-06-03 03:40:41] 2025-06-02 23:10:52,618 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 03:40:41] 2025-06-02 23:10:52,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 03:40:41] 2025-06-02 23:10:52,622 | INFO     | did not find any defunct processes belonging to 1883
[2025-06-03 03:40:41] 2025-06-02 23:10:52,626 | INFO     | did not find any defunct processes belonging to 1883
[2025-06-03 03:40:41] 2025-06-02 23:10:52,626 | INFO     | ready for new job
[2025-06-03 03:40:41] 2025-06-02 23:10:52,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 03:40:41] 2025-06-02 23:10:52,629 | INFO     | **************************************
[2025-06-03 03:40:41] 2025-06-02 23:10:52,629 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 03:40:41] 2025-06-02 23:10:52,629 | INFO     | **************************************
[2025-06-03 03:40:41] 2025-06-02 23:10:52,629 | INFO     | 
[2025-06-03 03:40:41] 2025-06-02 23:10:52,630 | INFO     | pilot is running in a VM
[2025-06-03 03:40:41] 2025-06-02 23:10:52,630 | INFO     | architecture information:
[2025-06-03 03:40:41] 2025-06-02 23:10:52,642 | INFO     | executing command: cat /etc/os-release
[2025-06-03 03:40:41] 2025-06-02 23:10:52,966 | INFO     | cat /etc/os-release:
[2025-06-03 03:40:41] NAME="CentOS Linux"
[2025-06-03 03:40:41] VERSION="7 (Core)"
[2025-06-03 03:40:41] ID="centos"
[2025-06-03 03:40:41] ID_LIKE="rhel fedora"
[2025-06-03 03:40:41] VERSION_ID="7"
[2025-06-03 03:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 03:40:41] ANSI_COLOR="0;31"
[2025-06-03 03:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 03:40:41] HOME_URL="https://www.centos.org/"
[2025-06-03 03:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 03:40:41] 
[2025-06-03 03:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 03:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 03:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 03:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 03:40:41] 
[2025-06-03 03:40:41] 2025-06-02 23:10:52,966 | INFO     | **************************************
[2025-06-03 03:40:41] 2025-06-02 23:10:53,470 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 03:40:41] 2025-06-02 23:10:53,647 | INFO     | sufficient remaining disk space (496675848192 B)
[2025-06-03 03:40:41] 2025-06-02 23:10:53,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 03:40:41] 2025-06-02 23:10:53,648 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 03:40:41] 2025-06-02 23:10:53,648 | INFO     | update_server=False
[2025-06-03 03:40:41] 2025-06-02 23:10:53,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 03:40:41] 2025-06-02 23:10:53,658 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 03:40:41] 2025-06-02 23:10:53,659 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 03:40:41] 2025-06-02 23:10:53,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 03:40:41] 2025-06-02 23:10:53,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 03:40:41] 2025-06-02 23:10:53,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 03:40:41] 2025-06-02 23:10:53,723 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 03:40:41] 2025-06-02 23:10:53,754 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 03:40:41] 2025-06-02 23:10:53,755 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 03:40:41] 2025-06-02 23:10:53,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 03:40:41] 2025-06-02 23:10:53,755 | INFO     | will abort loop
[2025-06-03 03:40:41] 2025-06-02 23:10:54,395 | INFO     | all data control threads have been joined
[2025-06-03 03:40:41] 2025-06-02 23:10:54,664 | INFO     | [job] retrieve thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:54,701 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:54,702 | INFO     | all job control threads have been joined
[2025-06-03 03:40:41] 2025-06-02 23:10:54,760 | INFO     | [job] job monitor thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:54,929 | INFO     | all payload control threads have been joined
[2025-06-03 03:40:41] 2025-06-02 23:10:54,957 | INFO     | [data] copytool_in thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,001 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,043 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 03:40:41] 2025-06-02 23:10:55,384 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,401 | INFO     | [data] control thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,675 | INFO     | [data] copytool_out thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,709 | INFO     | [job] control thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,916 | INFO     | [job] validate thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:55,935 | INFO     | [payload] control thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:56,049 | INFO     | [job] queue monitor thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:56,074 | INFO     | [payload] failed_post thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:56,190 | INFO     | [payload] validate_post thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:57,732 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 03:40:41] 2025-06-02 23:10:59,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834575234880)>', '<ExcThread(monitor, started 139834348336896)>']
[2025-06-03 03:40:41] 2025-06-02 23:10:59,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 03:40:41] 2025-06-02 23:10:59,695 | INFO     | [monitor] control thread has ended
[2025-06-03 03:40:41] 2025-06-02 23:11:04,333 | INFO     | all workflow threads have been joined
[2025-06-03 03:40:41] 2025-06-02 23:11:04,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 03:40:41] 2025-06-02 23:11:04,334 | INFO     | traces error code: 0
[2025-06-03 03:40:41] 2025-06-02 23:11:04,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 03:40:41] 2025-06-02 23:11:04,695 [wrapper] ==== pilot stdout END ====
[2025-06-03 03:40:41] 2025-06-02 23:11:04,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 03:40:41] 2025-06-02 23:11:04,811 [wrapper] pilotpid: 25479
[2025-06-03 03:40:41] 2025-06-02 23:11:04,906 [wrapper] Pilot exit status: 0
[2025-06-03 03:40:41] 2025-06-02 23:11:05,362 [wrapper] pandaids: 6665757194
[2025-06-03 03:40:41] 2025-06-02 23:11:06,515 [wrapper] cleanup supervisor_pilot  3367 25480
[2025-06-03 03:40:41] 2025-06-02 23:11:06,619 [wrapper] Test setup, not cleaning
[2025-06-03 03:40:41] 2025-06-02 23:11:06,730 [wrapper] apfmon messages muted
[2025-06-03 03:40:41] 2025-06-02 23:11:06,845 [wrapper] ==== wrapper stdout END ====
[2025-06-03 03:40:41] 2025-06-02 23:11:06,949 [wrapper] ==== wrapper stderr END ====
[2025-06-03 03:40:41]  *** Error codes and diagnostics ***
[2025-06-03 03:40:41]     "exeErrorCode": 0,
[2025-06-03 03:40:41]     "exeErrorDiag": "",
[2025-06-03 03:40:41]     "pilotErrorCode": 0,
[2025-06-03 03:40:41]     "pilotErrorDiag": "",
[2025-06-03 03:40:41]  *** Listing of results directory ***
[2025-06-03 03:40:41] total 420996
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc    495897 May 26 08:04 pilot3.tar.gz
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc      5111 May 26 08:12 queuedata.json
[2025-06-03 03:40:41] -rwx------. 1 boinc boinc     37140 May 26 08:12 runpilot2-wrapper.sh
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc       100 Jun  2 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 03:40:41] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 19:49 run_atlas
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc       105 Jun  2 19:49 job.xml
[2025-06-03 03:40:41] -rw-r--r--. 2 boinc boinc 221438999 Jun  2 19:49 EVNT.44871834._000486.pool.root.1
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc      6391 Jun  2 19:49 init_data.xml
[2025-06-03 03:40:41] -rw-r--r--. 2 boinc boinc     15093 Jun  2 19:49 start_atlas.sh
[2025-06-03 03:40:41] drwxrwx--x. 2 boinc boinc        68 Jun  2 19:49 shared
[2025-06-03 03:40:41] -rw-r--r--. 2 boinc boinc    508880 Jun  2 19:49 input.tar.gz
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc         0 Jun  2 19:49 boinc_lockfile
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc      2559 Jun  2 19:49 pandaJob.out
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc    988298 Jun  2 19:53 agis_schedconf.cvmfs.json
[2025-06-03 03:40:41] drwx------. 4 boinc boinc      4096 Jun  2 19:53 pilot3
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc 201697058 Jun  3 01:07 HITS.44871837._046871.pool.root.1
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc       531 Jun  3 01:08 boinc_task_state.xml
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc      1015 Jun  3 01:09 memory_monitor_summary.json
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc   1603667 Jun  3 01:09 agis_ddmendpoints.agis.ALL.json
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc    434585 Jun  3 01:09 log.44871837._046871.job.log.tgz.1
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc        95 Jun  3 01:10 pilot_heartbeat.json
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc      7687 Jun  3 01:10 heartbeat.json
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc      4725 Jun  3 01:11 pilotlog.txt
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc   1630774 Jun  3 01:11 log.44871837._046871.job.log.1
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc       357 Jun  3 01:11 output.list
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc       620 Jun  3 01:11 runtime_log
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc   2088960 Jun  3 01:11 result.tar.gz
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc      8659 Jun  3 01:11 runtime_log.err
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc       657 Jun  3 01:11 r8IMDmuFgd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmt6VKDmkwnXEm.diag
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc      8192 Jun  3 03:40 boinc_mmap_file
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc        28 Jun  3 03:40 wrapper_checkpoint.txt
[2025-06-03 03:40:41] -rw-r--r--. 1 boinc boinc     20636 Jun  3 03:40 stderr.txt
[2025-06-03 03:40:41] HITS file was successfully produced:
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc 201697058 Jun  3 01:07 shared/HITS.pool.root.1
[2025-06-03 03:40:41]  *** Contents of shared directory: ***
[2025-06-03 03:40:41] total 415780
[2025-06-03 03:40:41] -rw-r--r--. 2 boinc boinc 221438999 Jun  2 19:49 ATLAS.root_0
[2025-06-03 03:40:41] -rw-r--r--. 2 boinc boinc     15093 Jun  2 19:49 start_atlas.sh
[2025-06-03 03:40:41] -rw-r--r--. 2 boinc boinc    508880 Jun  2 19:49 input.tar.gz
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc 201697058 Jun  3 01:07 HITS.pool.root.1
[2025-06-03 03:40:41] -rw-------. 1 boinc boinc   2088960 Jun  3 01:11 result.tar.gz
03:40:43 (19747): run_atlas exited; CPU time 70493.154275
03:40:43 (19747): called boinc_finish(0)

</stderr_txt>
]]>

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