Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-01 21:35:16 (10456): Detected: vboxwrapper 26206
2025-06-01 21:35:16 (10456): Detected: BOINC client v7.16.20
2025-06-01 21:35:17 (10456): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-06-01 21:35:17 (10456): Successfully copied 'init_data.xml' to the shared directory.
2025-06-01 21:35:17 (10456): Create VM. (boinc_331ac438dcebd0d7, slot#9)
2025-06-01 21:35:18 (10456): Setting Memory Size for VM. (4800MB)
2025-06-01 21:35:18 (10456): Setting CPU Count for VM. (8)
2025-06-01 21:35:18 (10456): Setting Chipset Options for VM.
2025-06-01 21:35:19 (10456): Setting Graphics Controller Options for VM.
2025-06-01 21:35:19 (10456): Setting Boot Options for VM.
2025-06-01 21:35:19 (10456): Setting Network Configuration for NAT.
2025-06-01 21:35:19 (10456): Enabling VM Network Access.
2025-06-01 21:35:20 (10456): Disabling USB Support for VM.
2025-06-01 21:35:20 (10456): Disabling COM Port Support for VM.
2025-06-01 21:35:20 (10456): Disabling LPT Port Support for VM.
2025-06-01 21:35:20 (10456): Disabling Audio Support for VM.
2025-06-01 21:35:21 (10456): Disabling Clipboard Support for VM.
2025-06-01 21:35:21 (10456): Disabling Drag and Drop Support for VM.
2025-06-01 21:35:21 (10456): Adding storage controller(s) to VM.
2025-06-01 21:35:21 (10456): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-01 21:35:22 (10456): Adding VirtualBox Guest Additions to VM.
2025-06-01 21:35:23 (10456): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-01 21:35:23 (10456): forwarding host port 52540 to guest port 80
2025-06-01 21:35:23 (10456): Enabling remote desktop for VM.
2025-06-01 21:35:23 (10456): Required extension pack not installed, remote desktop not enabled.
2025-06-01 21:35:23 (10456): Enabling shared directory for VM.
2025-06-01 21:35:24 (10456): Starting VM using VBoxManage interface. (boinc_331ac438dcebd0d7, slot#9)
2025-06-01 21:35:27 (10456): Successfully started VM. (PID = '15012')
2025-06-01 21:35:27 (10456): Reporting VM Process ID to BOINC.
2025-06-01 21:35:27 (10456): Guest Log: BIOS: VirtualBox 6.1.50
2025-06-01 21:35:27 (10456): Guest Log: CPUID EDX: 0x178bfbff
2025-06-01 21:35:27 (10456): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-01 21:35:27 (10456): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-01 21:35:27 (10456): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-01 21:35:27 (10456): Detected: Web Application Enabled (http://localhost:52540)
2025-06-01 21:35:27 (10456): Preference change detected
2025-06-01 21:35:27 (10456): Setting CPU throttle for VM. (100%)
2025-06-01 21:35:28 (10456): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-01 21:35:29 (10456): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-01 21:35:29 (10456): Guest Log: BIOS: Booting from Hard Disk...
2025-06-01 21:35:32 (10456): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-01 21:35:32 (10456): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-01 21:35:32 (10456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-01 21:35:36 (10456): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-01 21:35:36 (10456): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-01 21:35:41 (10456): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000102 main     Log opened 2025-06-01T21:35:39.930020000Z
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000168 main     OS Product: Linux
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000187 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000201 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000216 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000216 main     Process ID: 1366
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.000216 main     Package type: LINUX_64BITS_GENERIC
2025-06-01 21:35:41 (10456): Guest Log: 00:00:00.001765 main     5.2.32 r132073 started. Verbose level = 0
2025-06-01 21:35:41 (10456): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-01 21:35:41 (10456): Guest Log: [INFO] Mounting shared directory
2025-06-01 21:35:41 (10456): Guest Log: [INFO] Checking for init_data.xml
2025-06-01 21:35:46 (10456): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-01 21:35:46 (10456): Guest Log: [INFO] Detected branch: prod
2025-06-01 21:35:46 (10456): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-01 21:35:46 (10456): Guest Log: Copying input files
2025-06-01 21:35:47 (10456): Guest Log: Copied input files into RunAtlas.
2025-06-01 21:35:47 (10456): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-01 21:35:47 (10456): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-01 21:35:47 (10456): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-01 21:35:47 (10456): Guest Log: Further information can be found at the LHC@home message board.
2025-06-01 21:35:51 (10456): Guest Log: 00:00:10.004009 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 342 811 000ns (GuestNow=1 748 806 551 590 042 000 ns GuestLast=1 748 813 739 932 853 000 ns fSetTimeLastLoop=true )
2025-06-01 21:35:57 (10456): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-01 21:35:58 (10456): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-01 21:35:58 (10456): Guest Log: 2.6.3.0 1643 0 32224 146680 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-01 21:35:58 (10456): Guest Log: copied the webapp to /var/www
2025-06-01 21:35:58 (10456): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-01 21:35:58 (10456): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-01 21:36:00 (10456): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-01 21:36:00 (10456): Guest Log:  *** Starting ATLAS job. (PandaID=6665936206 taskID=44871837) ***
2025-06-01 23:08:12 (10456): Guest Log:  *** Job finished ***
2025-06-01 23:08:12 (10456): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:07:56,498 | INFO     | [data] queue_monitor thread has finished
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:07:59,478 | INFO     | job.realtimelogging is not enabled
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:00,578 | INFO     | [payload] run_realtimelog thread has finished
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:02,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140678006626112)>', '<ExcThread(monitor, started 140676687722240)>']
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:03,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:03,726 | INFO     | [monitor] control thread has ended
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,651 | INFO     | all workflow threads have been joined
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,651 | INFO     | end of generic workflow (traces error code: 0)
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,651 | INFO     | traces error code: 0
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,724 [wrapper] ==== pilot stdout END ====
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,729 [wrapper] ==== wrapper stdout RESUME ====
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,735 [wrapper] pilotpid: 6024
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:07,744 [wrapper] Pilot exit status: 0
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:08,809 [wrapper] pandaids: 6665936206
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:08,841 [wrapper] cleanup supervisor_pilot   995 6025
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:08,850 [wrapper] Test setup, not cleaning
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:08,856 [wrapper] apfmon messages muted
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:08,860 [wrapper] ==== wrapper stdout END ====
2025-06-01 23:08:12 (10456): Guest Log: 2025-06-01 21:08:08,865 [wrapper] ==== wrapper stderr END ====
2025-06-01 23:08:12 (10456): Guest Log:  *** Error codes and diagnostics ***
2025-06-01 23:08:12 (10456): Guest Log:     "exeErrorCode": 0,
2025-06-01 23:08:12 (10456): Guest Log:     "exeErrorDiag": "",
2025-06-01 23:08:12 (10456): Guest Log:     "pilotErrorCode": 0,
2025-06-01 23:08:12 (10456): Guest Log:     "pilotErrorDiag": "",
2025-06-01 23:08:12 (10456): Guest Log:  *** Listing of results directory ***
2025-06-01 23:08:12 (10456): Guest Log: total 198056
2025-06-01 23:08:12 (10456): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 26 12:05 pilot3.tar.gz
2025-06-01 23:08:12 (10456): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 26 12:33 queuedata.json
2025-06-01 23:08:12 (10456): Guest Log: -rwx------. 1 atlas atlas     37140 May 26 12:36 runpilot2-wrapper.sh
2025-06-01 23:08:12 (10456): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  1 19:35 start_atlas.sh
2025-06-01 23:08:12 (10456): Guest Log: -rwxr-xr-x. 1 atlas atlas    508881 Jun  1 19:35 input.tar.gz
2025-06-01 23:08:12 (10456): Guest Log: -rwxr-xr-x. 1 atlas atlas      8793 Jun  1 19:35 init_data.xml
2025-06-01 23:08:12 (10456): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  1 19:35 EVNT.44871834._002029.pool.root.1 -> /data/./ATLAS.root_0
2025-06-01 23:08:12 (10456): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Jun  1 19:35 pandaJob.out
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas    988188 Jun  1 19:40 agis_schedconf.cvmfs.json
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  1 19:40 agis_ddmendpoints.agis.ALL.json
2025-06-01 23:08:12 (10456): Guest Log: drwx------. 4 atlas atlas      4096 Jun  1 19:41 pilot3
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas 197482806 Jun  1 21:07 HITS.44871837._050949.pool.root.1
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas        95 Jun  1 21:07 pilot_heartbeat.json
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas      1026 Jun  1 21:07 memory_monitor_summary.json
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas    310193 Jun  1 21:07 log.44871837._050949.job.log.tgz.1
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas      7718 Jun  1 21:07 heartbeat.json
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  1 21:08 pilotlog.txt
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas    468514 Jun  1 21:08 log.44871837._050949.job.log.1
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas       357 Jun  1 21:08 output.list
2025-06-01 23:08:12 (10456): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  1 21:08 runtime_log
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas    798720 Jun  1 21:08 result.tar.gz
2025-06-01 23:08:12 (10456): Guest Log: -rw-r--r--. 1 atlas atlas      8589 Jun  1 21:08 runtime_log.err
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas       652 Jun  1 21:08 CwFMDm8Emd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdoWKDmSydsGm.diag
2025-06-01 23:08:12 (10456): Guest Log: Looking for outputfile HITS.44871837._050949.pool.root.1
2025-06-01 23:08:12 (10456): Guest Log: HITS file was successfully produced
2025-06-01 23:08:12 (10456): Guest Log: -rw-------. 1 atlas atlas 197482806 Jun  1 21:07 /home/atlas/RunAtlas/HITS.44871837._050949.pool.root.1
2025-06-01 23:08:13 (10456): Guest Log: Successfully finished the ATLAS job!
2025-06-01 23:08:13 (10456): Guest Log: Copying the results back to the shared directory!
2025-06-01 23:08:13 (10456): Guest Log:  *** Contents of shared directory: ***
2025-06-01 23:08:13 (10456): Guest Log: total 411656
2025-06-01 23:08:13 (10456): Guest Log: -rwxrwxrwx. 1 root root 222708842 Jun  1 19:35 ATLAS.root_0
2025-06-01 23:08:13 (10456): Guest Log: -rwxrwxrwx. 1 root root 197482806 Jun  1  2025 HITS.pool.root.1
2025-06-01 23:08:13 (10456): Guest Log: -rwxrwxrwx. 1 root root      8793 Jun  1 19:35 init_data.xml
2025-06-01 23:08:13 (10456): Guest Log: -rwxrwxrwx. 1 root root    508881 Jun  1 13:02 input.tar.gz
2025-06-01 23:08:13 (10456): Guest Log: -rwxrwxrwx. 1 root root    798720 Jun  1  2025 result.tar.gz
2025-06-01 23:08:13 (10456): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  1 13:02 start_atlas.sh
2025-06-01 23:08:13 (10456): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-01 23:08:13 (10456): VM Completion File Detected.
2025-06-01 23:08:13 (10456): Powering off VM.
2025-06-01 23:08:14 (10456): Successfully stopped VM.
2025-06-01 23:08:14 (10456): Deregistering VM. (boinc_331ac438dcebd0d7, slot#9)
2025-06-01 23:08:14 (10456): Removing network bandwidth throttle group from VM.
2025-06-01 23:08:14 (10456): Removing VM from VirtualBox.
23:08:19 (10456): called boinc_finish(0)

</stderr_txt>
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