Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:32:50 (14555): wrapper (7.7.26015): starting
13:32:50 (14555): wrapper: running run_atlas (--nthreads 8)
[2025-06-01 13:32:50] Arguments: --nthreads 8
[2025-06-01 13:32:50] Threads: 8
[2025-06-01 13:32:50] Checking for CVMFS
[2025-06-01 13:32:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-01 13:32:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-01 13:32:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-01 13:32:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-01 13:32:52] 2.11.2.0 702 29014 83784 146669 2 16 14330062 25165824 4632 130560 0 16612241 99.789 17835123 2231 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-01 13:32:52] CVMFS is ok
[2025-06-01 13:32:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-01 13:32:52] Checking for apptainer binary...
[2025-06-01 13:32:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-01 13:32:52] Running /usr/bin/apptainer --version
[2025-06-01 13:32:52] apptainer version 1.3.2-1.el7
[2025-06-01 13:32:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-01 13:32:56] cg-vwn487.simple-grid.lan
[2025-06-01 13:32:56] apptainer works
[2025-06-01 13:32:56] Set ATHENA_PROC_NUMBER=8
[2025-06-01 13:32:56] Set ATHENA_CORE_NUMBER=8
[2025-06-01 13:32:56] Starting ATLAS job with PandaID=6665713463
[2025-06-01 13:32:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-01 18:49:05]  *** The last 200 lines of the pilot log: ***
[2025-06-01 18:49:05] 2025-06-01 16:38:17,098 | INFO     | extracted standard memory fields from prmon json
[2025-06-01 18:49:05] 2025-06-01 16:38:17,098 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-01 18:49:05] 2025-06-01 16:38:17,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-01 18:49:05] 2025-06-01 16:38:17,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-01 18:49:05] 2025-06-01 16:38:17,105 | INFO     | fitting pss+swap vs Time
[2025-06-01 18:49:05] 2025-06-01 16:38:17,112 | INFO     | sum of square deviations: 7330250928.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,115 | INFO     | sum of deviations: 100261752690.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,115 | INFO     | mean x: 1748787026.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,115 | INFO     | mean y: 2450650.174216028
[2025-06-01 18:49:05] 2025-06-01 16:38:17,115 | INFO     | -- intersect: -23917119638.8243
[2025-06-01 18:49:05] 2025-06-01 16:38:17,115 | INFO     | intersect: -23917119638.8243
[2025-06-01 18:49:05] 2025-06-01 16:38:17,118 | INFO     | chi2: 6.7305915872113635
[2025-06-01 18:49:05] 2025-06-01 16:38:17,118 | INFO     | sum of square deviations: 6953769450.5
[2025-06-01 18:49:05] 2025-06-01 16:38:17,121 | INFO     | sum of deviations: 117271677384.5
[2025-06-01 18:49:05] 2025-06-01 16:38:17,121 | INFO     | mean x: 1748786873.5
[2025-06-01 18:49:05] 2025-06-01 16:38:17,122 | INFO     | mean y: 2457431.287234043
[2025-06-01 18:49:05] 2025-06-01 16:38:17,122 | INFO     | -- intersect: -29489916669.294178
[2025-06-01 18:49:05] 2025-06-01 16:38:17,122 | INFO     | intersect: -29489916669.294178
[2025-06-01 18:49:05] 2025-06-01 16:38:17,122 | INFO     | chi2: 6.006916029311561
[2025-06-01 18:49:05] 2025-06-01 16:38:17,122 | INFO     | current chi2=6.006916029311561 (change=10.752034921786692 %)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,122 | INFO     | right removable region: 281
[2025-06-01 18:49:05] 2025-06-01 16:38:17,123 | INFO     | sum of square deviations: 6953769450.5
[2025-06-01 18:49:05] 2025-06-01 16:38:17,126 | INFO     | sum of deviations: 4387572741.999992
[2025-06-01 18:49:05] 2025-06-01 16:38:17,127 | INFO     | mean x: 1748787178.5
[2025-06-01 18:49:05] 2025-06-01 16:38:17,127 | INFO     | mean y: 2489451.9716312056
[2025-06-01 18:49:05] 2025-06-01 16:38:17,127 | INFO     | -- intersect: -1100930931.8309932
[2025-06-01 18:49:05] 2025-06-01 16:38:17,127 | INFO     | intersect: -1100930931.8309932
[2025-06-01 18:49:05] 2025-06-01 16:38:17,128 | INFO     | chi2: 2.3298110234253633
[2025-06-01 18:49:05] 2025-06-01 16:38:17,128 | INFO     | current chi2=2.3298110234253633 (change=65.38475120296734 %)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,129 | INFO     | sum of square deviations: 6590404498.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,132 | INFO     | sum of deviations: -44745619079.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,132 | INFO     | mean x: 1748787331.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,132 | INFO     | mean y: 2509969.0541516244
[2025-06-01 18:49:05] 2025-06-01 16:38:17,132 | INFO     | -- intersect: 11875919527.883797
[2025-06-01 18:49:05] 2025-06-01 16:38:17,132 | INFO     | intersect: 11875919527.883797
[2025-06-01 18:49:05] 2025-06-01 16:38:17,133 | INFO     | chi2: 0.9395664605390045
[2025-06-01 18:49:05] 2025-06-01 16:38:17,133 | INFO     | current chi2=0.9395664605390045 (change=59.671988367639216 %)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,133 | INFO     | sum of square deviations: 6239923508.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,136 | INFO     | sum of deviations: -41573792014.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,136 | INFO     | mean x: 1748787483.5
[2025-06-01 18:49:05] 2025-06-01 16:38:17,136 | INFO     | mean y: 2508565.205882353
[2025-06-01 18:49:05] 2025-06-01 16:38:17,136 | INFO     | -- intersect: 11653889711.545963
[2025-06-01 18:49:05] 2025-06-01 16:38:17,136 | INFO     | intersect: 11653889711.545963
[2025-06-01 18:49:05] 2025-06-01 16:38:17,137 | INFO     | chi2: 0.9236400847227233
[2025-06-01 18:49:05] 2025-06-01 16:38:17,137 | INFO     | current chi2=0.9236400847227233 (change=1.6950770898255203 %)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,137 | INFO     | left removable region: 30
[2025-06-01 18:49:05] 2025-06-01 16:38:17,137 | INFO     | sum of square deviations: 4903347750.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,139 | INFO     | sum of deviations: 5628530146.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,139 | INFO     | mean x: 1748787758.0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,139 | INFO     | mean y: 2502753.864541833
[2025-06-01 18:49:05] 2025-06-01 16:38:17,139 | INFO     | -- intersect: -2004922604.6282866
[2025-06-01 18:49:05] 2025-06-01 16:38:17,139 | INFO     | intersect: -2004922604.6282866
[2025-06-01 18:49:05] 2025-06-01 16:38:17,140 | INFO     | chi2: 0.013003524060054854
[2025-06-01 18:49:05] 2025-06-01 16:38:17,140 | INFO     | -- intersect: -2004922604.6282866
[2025-06-01 18:49:05] 2025-06-01 16:38:17,140 | INFO     | current memory leak: 1.15 B/s (using 251 data points, chi2=0.01)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,141 | INFO     | ..............................
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . Timing measurements:
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . get job = 0 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . initial setup = 11 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . payload setup = 182 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . stage-in = 0 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . payload execution = 17638 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . stage-out = 3 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | . log creation = 1 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,142 | INFO     | ..............................
[2025-06-01 18:49:05] 2025-06-01 16:38:17,273 | INFO     | 
[2025-06-01 18:49:05] 2025-06-01 16:38:17,273 | INFO     | job summary report
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | --------------------------------------------------
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | PanDA job id: 6665713463
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | task id: 44871837
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | errors: (none)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | pilot state: finished 
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | transexitcode: 0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | exeerrorcode: 0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | exeerrordiag: 
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | exitcode: 0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | exitmsg: OK
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | cpuconsumptiontime: 65028 s
[2025-06-01 18:49:05] 2025-06-01 16:38:17,274 | INFO     | nevents: 400
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | neventsw: 0
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | pid: 27270
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | pgrp: 27270
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | corecount: 8
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | event service: False
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | sizes: {0: 2405005, 1: 2405260, 2: 2405260, 12: 2405288, 23: 2405316, 34: 2405344, 44: 2405500, 55: 2405528, 66: 2405556, 77: 2405584, 82: 2405846, 87: 2406182, 17
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | --------------------------------------------------
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | 
[2025-06-01 18:49:05] 2025-06-01 16:38:17,275 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-01 18:49:05] 2025-06-01 16:38:17,432 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,433 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-01 18:49:05] 2025-06-01 16:38:17,434 | INFO     | job 6665713463 has completed (purged errors)
[2025-06-01 18:49:05] 2025-06-01 16:38:17,435 | INFO     | overall cleanup function is called
[2025-06-01 18:49:05] 2025-06-01 16:38:18,444 | INFO     | --- collectZombieJob: --- 10, [27270]
[2025-06-01 18:49:05] 2025-06-01 16:38:18,444 | INFO     | zombie collector waiting for pid 27270
[2025-06-01 18:49:05] 2025-06-01 16:38:18,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-01 18:49:05] 2025-06-01 16:38:18,444 | INFO     | collected zombie processes
[2025-06-01 18:49:05] 2025-06-01 16:38:18,444 | INFO     | will attempt to kill all subprocesses of pid=27270
[2025-06-01 18:49:05] 2025-06-01 16:38:18,541 | INFO     | process IDs to be killed: [27270] (in reverse order)
[2025-06-01 18:49:05] 2025-06-01 16:38:19,064 | WARNING  | found no corresponding commands to process id(s)
[2025-06-01 18:49:05] 2025-06-01 16:38:19,064 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-01 18:49:05] 2025-06-01 16:38:19,068 | INFO     | did not find any defunct processes belonging to 27270
[2025-06-01 18:49:05] 2025-06-01 16:38:19,071 | INFO     | did not find any defunct processes belonging to 27270
[2025-06-01 18:49:05] 2025-06-01 16:38:19,071 | INFO     | ready for new job
[2025-06-01 18:49:05] 2025-06-01 16:38:19,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-01 18:49:05] 2025-06-01 16:38:19,074 | INFO     | **************************************
[2025-06-01 18:49:05] 2025-06-01 16:38:19,074 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-01 18:49:05] 2025-06-01 16:38:19,074 | INFO     | **************************************
[2025-06-01 18:49:05] 2025-06-01 16:38:19,074 | INFO     | 
[2025-06-01 18:49:05] 2025-06-01 16:38:19,075 | INFO     | pilot is running in a VM
[2025-06-01 18:49:05] 2025-06-01 16:38:19,075 | INFO     | architecture information:
[2025-06-01 18:49:05] 2025-06-01 16:38:19,085 | INFO     | executing command: cat /etc/os-release
[2025-06-01 18:49:05] 2025-06-01 16:38:19,213 | INFO     | cat /etc/os-release:
[2025-06-01 18:49:05] NAME="CentOS Linux"
[2025-06-01 18:49:05] VERSION="7 (Core)"
[2025-06-01 18:49:05] ID="centos"
[2025-06-01 18:49:05] ID_LIKE="rhel fedora"
[2025-06-01 18:49:05] VERSION_ID="7"
[2025-06-01 18:49:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-01 18:49:05] ANSI_COLOR="0;31"
[2025-06-01 18:49:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-01 18:49:05] HOME_URL="https://www.centos.org/"
[2025-06-01 18:49:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-01 18:49:05] 
[2025-06-01 18:49:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-01 18:49:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-01 18:49:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-01 18:49:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-01 18:49:05] 
[2025-06-01 18:49:05] 2025-06-01 16:38:19,213 | INFO     | **************************************
[2025-06-01 18:49:05] 2025-06-01 16:38:19,716 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-01 18:49:05] 2025-06-01 16:38:20,015 | INFO     | sufficient remaining disk space (497187553280 B)
[2025-06-01 18:49:05] 2025-06-01 16:38:20,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-01 18:49:05] 2025-06-01 16:38:20,016 | INFO     | current server update state: UPDATING_FINAL
[2025-06-01 18:49:05] 2025-06-01 16:38:20,016 | INFO     | update_server=False
[2025-06-01 18:49:05] 2025-06-01 16:38:20,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-01 18:49:05] 2025-06-01 16:38:20,016 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-01 18:49:05] 2025-06-01 16:38:20,016 | INFO     | found 0 job(s) in 20 queues
[2025-06-01 18:49:05] 2025-06-01 16:38:20,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-01 18:49:05] 2025-06-01 16:38:20,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-01 18:49:05] 2025-06-01 16:38:20,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-01 18:49:05] 2025-06-01 16:38:20,046 | INFO     | all data control threads have been joined
[2025-06-01 18:49:05] 2025-06-01 16:38:20,101 | INFO     | all job control threads have been joined
[2025-06-01 18:49:05] 2025-06-01 16:38:20,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-01 18:49:05] 2025-06-01 16:38:20,796 | INFO     | aborting loop
[2025-06-01 18:49:05] 2025-06-01 16:38:20,839 | INFO     | all payload control threads have been joined
[2025-06-01 18:49:05] 2025-06-01 16:38:20,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-01 18:49:05] 2025-06-01 16:38:21,022 | INFO     | [job] retrieve thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,052 | INFO     | [data] control thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,108 | INFO     | [job] control thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,378 | INFO     | [payload] failed_post thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,658 | INFO     | [payload] validate_post thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,802 | INFO     | [job] job monitor thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,845 | INFO     | [payload] control thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,898 | INFO     | [job] create_data_payload thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:21,990 | INFO     | [payload] execute_payloads thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:22,034 | INFO     | [data] copytool_out thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:22,063 | INFO     | [data] copytool_in thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:22,291 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-01 18:49:05] 2025-06-01 16:38:22,382 | INFO     | [job] validate thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:22,432 | INFO     | [payload] validate_pre thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:23,297 | INFO     | [job] queue monitor thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:24,916 | INFO     | [data] queue_monitor thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:30,729 | INFO     | job.realtimelogging is not enabled
[2025-06-01 18:49:05] 2025-06-01 16:38:31,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-01 18:49:05] 2025-06-01 16:38:33,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149961824064)>', '<ExcThread(monitor, started 140149514024704)>']
[2025-06-01 18:49:05] 2025-06-01 16:38:34,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-01 18:49:05] 2025-06-01 16:38:34,100 | INFO     | [monitor] control thread has ended
[2025-06-01 18:49:05] 2025-06-01 16:38:38,546 | INFO     | all workflow threads have been joined
[2025-06-01 18:49:05] 2025-06-01 16:38:38,546 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-01 18:49:05] 2025-06-01 16:38:38,546 | INFO     | traces error code: 0
[2025-06-01 18:49:05] 2025-06-01 16:38:38,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-01 18:49:05] 2025-06-01 16:38:39,095 [wrapper] ==== pilot stdout END ====
[2025-06-01 18:49:05] 2025-06-01 16:38:39,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-01 18:49:05] 2025-06-01 16:38:39,266 [wrapper] pilotpid: 18696
[2025-06-01 18:49:05] 2025-06-01 16:38:39,329 [wrapper] Pilot exit status: 0
[2025-06-01 18:49:05] 2025-06-01 16:38:39,776 [wrapper] pandaids: 6665713463
[2025-06-01 18:49:05] 2025-06-01 16:38:40,670 [wrapper] cleanup supervisor_pilot  2848 18697
[2025-06-01 18:49:05] 2025-06-01 16:38:40,765 [wrapper] Test setup, not cleaning
[2025-06-01 18:49:05] 2025-06-01 16:38:40,863 [wrapper] apfmon messages muted
[2025-06-01 18:49:05] 2025-06-01 16:38:40,978 [wrapper] ==== wrapper stdout END ====
[2025-06-01 18:49:05] 2025-06-01 16:38:41,092 [wrapper] ==== wrapper stderr END ====
[2025-06-01 18:49:05]  *** Error codes and diagnostics ***
[2025-06-01 18:49:05]     "exeErrorCode": 0,
[2025-06-01 18:49:05]     "exeErrorDiag": "",
[2025-06-01 18:49:05]     "pilotErrorCode": 0,
[2025-06-01 18:49:05]     "pilotErrorDiag": "",
[2025-06-01 18:49:05]  *** Listing of results directory ***
[2025-06-01 18:49:05] total 420632
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc    495897 May 25 03:48 pilot3.tar.gz
[2025-06-01 18:49:05] -rwx------. 1 boinc boinc     37140 May 25 03:59 runpilot2-wrapper.sh
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc      5111 May 25 03:59 queuedata.json
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc       100 Jun  1 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-01 18:49:05] -rwxr-xr-x. 1 boinc boinc      7986 Jun  1 13:32 run_atlas
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc       105 Jun  1 13:32 job.xml
[2025-06-01 18:49:05] -rw-r--r--. 2 boinc boinc 222629445 Jun  1 13:32 EVNT.44871834._001094.pool.root.1
[2025-06-01 18:49:05] -rw-r--r--. 2 boinc boinc     15093 Jun  1 13:32 start_atlas.sh
[2025-06-01 18:49:05] drwxrwx--x. 2 boinc boinc        68 Jun  1 13:32 shared
[2025-06-01 18:49:05] -rw-r--r--. 2 boinc boinc    508875 Jun  1 13:32 input.tar.gz
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc         0 Jun  1 13:32 boinc_lockfile
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc      2558 Jun  1 13:32 pandaJob.out
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc    988196 Jun  1 13:36 agis_schedconf.cvmfs.json
[2025-06-01 18:49:05] drwx------. 4 boinc boinc      4096 Jun  1 13:36 pilot3
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc      6393 Jun  1 13:50 init_data.xml
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc 200391997 Jun  1 18:35 HITS.44871837._027442.pool.root.1
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc       531 Jun  1 18:35 boinc_task_state.xml
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc      1017 Jun  1 18:36 memory_monitor_summary.json
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc   1603667 Jun  1 18:36 agis_ddmendpoints.agis.ALL.json
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc    406576 Jun  1 18:36 log.44871837._027442.job.log.tgz.1
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc        95 Jun  1 18:37 pilot_heartbeat.json
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc      7689 Jun  1 18:38 heartbeat.json
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc      4611 Jun  1 18:38 pilotlog.txt
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc   1534167 Jun  1 18:38 log.44871837._027442.job.log.1
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc       357 Jun  1 18:38 output.list
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc       620 Jun  1 18:38 runtime_log
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc   1955840 Jun  1 18:38 result.tar.gz
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc       657 Jun  1 18:38 XSpNDmsoFd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmgNKDmKGTF6n.diag
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc      8659 Jun  1 18:38 runtime_log.err
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc      8192 Jun  1 18:49 boinc_mmap_file
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc        28 Jun  1 18:49 wrapper_checkpoint.txt
[2025-06-01 18:49:05] -rw-r--r--. 1 boinc boinc     20502 Jun  1 18:49 stderr.txt
[2025-06-01 18:49:05] HITS file was successfully produced:
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc 200391997 Jun  1 18:35 shared/HITS.pool.root.1
[2025-06-01 18:49:05]  *** Contents of shared directory: ***
[2025-06-01 18:49:05] total 415536
[2025-06-01 18:49:05] -rw-r--r--. 2 boinc boinc 222629445 Jun  1 13:32 ATLAS.root_0
[2025-06-01 18:49:05] -rw-r--r--. 2 boinc boinc     15093 Jun  1 13:32 start_atlas.sh
[2025-06-01 18:49:05] -rw-r--r--. 2 boinc boinc    508875 Jun  1 13:32 input.tar.gz
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc 200391997 Jun  1 18:35 HITS.pool.root.1
[2025-06-01 18:49:05] -rw-------. 1 boinc boinc   1955840 Jun  1 18:38 result.tar.gz
18:49:07 (14555): run_atlas exited; CPU time 65234.161724
18:49:07 (14555): called boinc_finish(0)

</stderr_txt>
]]>

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