Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-01 06:26:26 (16012): Detected: vboxwrapper 26206
2025-06-01 06:26:26 (16012): Detected: BOINC client v7.16.20
2025-06-01 06:26:28 (16012): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-06-01 06:26:28 (16012): Successfully copied 'init_data.xml' to the shared directory.
2025-06-01 06:26:28 (16012): Create VM. (boinc_8b697be58f94299b, slot#6)
2025-06-01 06:26:29 (16012): Setting Memory Size for VM. (4700MB)
2025-06-01 06:26:29 (16012): Setting CPU Count for VM. (7)
2025-06-01 06:26:29 (16012): Setting Chipset Options for VM.
2025-06-01 06:26:30 (16012): Setting Graphics Controller Options for VM.
2025-06-01 06:26:30 (16012): Setting Boot Options for VM.
2025-06-01 06:26:30 (16012): Setting Network Configuration for NAT.
2025-06-01 06:26:31 (16012): Enabling VM Network Access.
2025-06-01 06:26:31 (16012): Disabling USB Support for VM.
2025-06-01 06:26:31 (16012): Disabling COM Port Support for VM.
2025-06-01 06:26:31 (16012): Disabling LPT Port Support for VM.
2025-06-01 06:26:32 (16012): Disabling Audio Support for VM.
2025-06-01 06:26:32 (16012): Disabling Clipboard Support for VM.
2025-06-01 06:26:32 (16012): Disabling Drag and Drop Support for VM.
2025-06-01 06:26:32 (16012): Adding storage controller(s) to VM.
2025-06-01 06:26:33 (16012): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-01 06:26:34 (16012): Adding VirtualBox Guest Additions to VM.
2025-06-01 06:26:34 (16012): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-01 06:26:34 (16012): forwarding host port 63595 to guest port 80
2025-06-01 06:26:34 (16012): Enabling remote desktop for VM.
2025-06-01 06:26:35 (16012): Required extension pack not installed, remote desktop not enabled.
2025-06-01 06:26:35 (16012): Enabling shared directory for VM.
2025-06-01 06:26:35 (16012): Starting VM using VBoxManage interface. (boinc_8b697be58f94299b, slot#6)
2025-06-01 06:26:39 (16012): Successfully started VM. (PID = '14400')
2025-06-01 06:26:39 (16012): Reporting VM Process ID to BOINC.
2025-06-01 06:26:39 (16012): Guest Log: BIOS: VirtualBox 6.1.50
2025-06-01 06:26:39 (16012): Guest Log: CPUID EDX: 0x178bfbff
2025-06-01 06:26:39 (16012): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-01 06:26:39 (16012): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-01 06:26:39 (16012): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-01 06:26:39 (16012): Detected: Web Application Enabled (http://localhost:63595)
2025-06-01 06:26:39 (16012): Preference change detected
2025-06-01 06:26:39 (16012): Setting CPU throttle for VM. (100%)
2025-06-01 06:26:39 (16012): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-01 06:26:41 (16012): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-01 06:26:41 (16012): Guest Log: BIOS: Booting from Hard Disk...
2025-06-01 06:26:44 (16012): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-01 06:26:44 (16012): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-01 06:26:44 (16012): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-01 06:26:49 (16012): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-01 06:26:49 (16012): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-01 06:26:55 (16012): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000121 main     Log opened 2025-06-01T06:26:53.029445000Z
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000191 main     OS Product: Linux
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000216 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000232 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000247 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000247 main     Process ID: 1348
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000248 main     Package type: LINUX_64BITS_GENERIC
2025-06-01 06:26:55 (16012): Guest Log: 00:00:00.000676 main     5.2.32 r132073 started. Verbose level = 0
2025-06-01 06:26:55 (16012): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-01 06:26:55 (16012): Guest Log: [INFO] Mounting shared directory
2025-06-01 06:26:55 (16012): Guest Log: [INFO] Checking for init_data.xml
2025-06-01 06:26:58 (16012): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-01 06:26:58 (16012): Guest Log: [INFO] Detected branch: prod
2025-06-01 06:26:58 (16012): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-01 06:26:58 (16012): Guest Log: Copying input files
2025-06-01 06:26:59 (16012): Guest Log: Copied input files into RunAtlas.
2025-06-01 06:26:59 (16012): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-01 06:26:59 (16012): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-01 06:26:59 (16012): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-01 06:26:59 (16012): Guest Log: Further information can be found at the LHC@home message board.
2025-06-01 06:27:05 (16012): Guest Log: 00:00:10.048541 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 382 143 000ns (GuestNow=1 748 752 024 649 842 000 ns GuestLast=1 748 759 213 031 985 000 ns fSetTimeLastLoop=true )
2025-06-01 06:27:11 (16012): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-01 06:27:11 (16012): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-01 06:27:11 (16012): Guest Log: 2.6.3.0 1625 0 30156 146658 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-01 06:27:12 (16012): Guest Log: copied the webapp to /var/www
2025-06-01 06:27:12 (16012): Guest Log: ATHENA_PROC_NUMBER=7
2025-06-01 06:27:12 (16012): Guest Log: ATHENA_CORE_NUMBER=7
2025-06-01 06:27:12 (16012): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-01 06:27:12 (16012): Guest Log:  *** Starting ATLAS job. (PandaID=6668862543 taskID=44871837) ***
2025-06-01 07:50:01 (16012): Guest Log:  *** Job finished ***
2025-06-01 07:50:01 (16012): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:43,628 | INFO     | [data] queue_monitor thread has finished
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:50,456 | INFO     | job.realtimelogging is not enabled
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:51,457 | INFO     | [payload] run_realtimelog thread has finished
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:53,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742179125056)>', '<ExcThread(monitor, started 139740913329920)>']
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:54,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:54,077 | INFO     | [monitor] control thread has ended
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,150 | INFO     | all workflow threads have been joined
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,150 | INFO     | end of generic workflow (traces error code: 0)
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,150 | INFO     | traces error code: 0
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,213 [wrapper] ==== pilot stdout END ====
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,217 [wrapper] ==== wrapper stdout RESUME ====
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,221 [wrapper] pilotpid: 5957
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,224 [wrapper] Pilot exit status: 0
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,301 [wrapper] pandaids: 6668862543
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,322 [wrapper] cleanup supervisor_pilot   889 5958
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,326 [wrapper] Test setup, not cleaning
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,330 [wrapper] apfmon messages muted
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,333 [wrapper] ==== wrapper stdout END ====
2025-06-01 07:50:01 (16012): Guest Log: 2025-06-01 05:49:58,337 [wrapper] ==== wrapper stderr END ====
2025-06-01 07:50:01 (16012): Guest Log:  *** Error codes and diagnostics ***
2025-06-01 07:50:01 (16012): Guest Log:     "exeErrorCode": 0,
2025-06-01 07:50:01 (16012): Guest Log:     "exeErrorDiag": "",
2025-06-01 07:50:01 (16012): Guest Log:     "pilotErrorCode": 0,
2025-06-01 07:50:01 (16012): Guest Log:     "pilotErrorDiag": "",
2025-06-01 07:50:01 (16012): Guest Log:  *** Listing of results directory ***
2025-06-01 07:50:01 (16012): Guest Log: total 193344
2025-06-01 07:50:01 (16012): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 19:15 pilot3.tar.gz
2025-06-01 07:50:01 (16012): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 19:42 runpilot2-wrapper.sh
2025-06-01 07:50:01 (16012): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 19:42 queuedata.json
2025-06-01 07:50:01 (16012): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  1 04:26 start_atlas.sh
2025-06-01 07:50:01 (16012): Guest Log: -rwxr-xr-x. 1 atlas atlas    508873 Jun  1 04:26 input.tar.gz
2025-06-01 07:50:01 (16012): Guest Log: -rwxr-xr-x. 1 atlas atlas      8773 Jun  1 04:26 init_data.xml
2025-06-01 07:50:01 (16012): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  1 04:26 EVNT.44871834._003481.pool.root.1 -> /data/./ATLAS.root_0
2025-06-01 07:50:01 (16012): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  1 04:27 pandaJob.out
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas    987420 Jun  1 04:27 agis_schedconf.cvmfs.json
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  1 04:27 agis_ddmendpoints.agis.ALL.json
2025-06-01 07:50:01 (16012): Guest Log: drwx------. 4 atlas atlas      4096 Jun  1 04:27 pilot3
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas 192739392 Jun  1 05:49 HITS.44871837._089475.pool.root.1
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas        95 Jun  1 05:49 pilot_heartbeat.json
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas      1026 Jun  1 05:49 memory_monitor_summary.json
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas    288223 Jun  1 05:49 log.44871837._089475.job.log.tgz.1
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas      7711 Jun  1 05:49 heartbeat.json
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas      5000 Jun  1 05:49 pilotlog.txt
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas    449838 Jun  1 05:49 log.44871837._089475.job.log.1
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas       357 Jun  1 05:49 output.list
2025-06-01 07:50:01 (16012): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  1 05:49 runtime_log
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas    757760 Jun  1 05:49 result.tar.gz
2025-06-01 07:50:01 (16012): Guest Log: -rw-r--r--. 1 atlas atlas      8589 Jun  1 05:49 runtime_log.err
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas       651 Jun  1 05:49 g94LDmNqbe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkwcKDm6U0vKm.diag
2025-06-01 07:50:01 (16012): Guest Log: Looking for outputfile HITS.44871837._089475.pool.root.1
2025-06-01 07:50:01 (16012): Guest Log: HITS file was successfully produced
2025-06-01 07:50:01 (16012): Guest Log: -rw-------. 1 atlas atlas 192739392 Jun  1 05:49 /home/atlas/RunAtlas/HITS.44871837._089475.pool.root.1
2025-06-01 07:50:02 (16012): Guest Log: Successfully finished the ATLAS job!
2025-06-01 07:50:02 (16012): Guest Log: Copying the results back to the shared directory!
2025-06-01 07:50:02 (16012): Guest Log:  *** Contents of shared directory: ***
2025-06-01 07:50:02 (16012): Guest Log: total 409680
2025-06-01 07:50:02 (16012): Guest Log: -rwxrwxrwx. 1 root root 225470058 Jun  1 04:26 ATLAS.root_0
2025-06-01 07:50:02 (16012): Guest Log: -rwxrwxrwx. 1 root root 192739392 Jun  1  2025 HITS.pool.root.1
2025-06-01 07:50:02 (16012): Guest Log: -rwxrwxrwx. 1 root root      8773 Jun  1 04:26 init_data.xml
2025-06-01 07:50:02 (16012): Guest Log: -rwxrwxrwx. 1 root root    508873 Jun  1 02:36 input.tar.gz
2025-06-01 07:50:02 (16012): Guest Log: -rwxrwxrwx. 1 root root    757760 Jun  1  2025 result.tar.gz
2025-06-01 07:50:02 (16012): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  1 02:36 start_atlas.sh
2025-06-01 07:50:02 (16012): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-01 07:50:02 (16012): VM Completion File Detected.
2025-06-01 07:50:02 (16012): Powering off VM.
2025-06-01 07:50:03 (16012): Successfully stopped VM.
2025-06-01 07:50:03 (16012): Deregistering VM. (boinc_8b697be58f94299b, slot#6)
2025-06-01 07:50:03 (16012): Removing network bandwidth throttle group from VM.
2025-06-01 07:50:03 (16012): Removing VM from VirtualBox.
07:50:08 (16012): called boinc_finish(0)

</stderr_txt>
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