Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:13:51 (3820215): wrapper (7.7.26015): starting
20:13:51 (3820215): wrapper: running run_atlas (--nthreads 12)
[2025-05-31 20:13:51] Arguments: --nthreads 12
[2025-05-31 20:13:51] Threads: 12
[2025-05-31 20:13:51] Checking for CVMFS
[2025-05-31 20:13:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-31 20:13:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-31 20:13:52] Running cvmfs_config stat atlas.cern.ch
[2025-05-31 20:13:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-31 20:13:53] 2.12.6.0 2648775 86072 172564 146652 3 15 24211312 25181184 11125 16776704 1 457243314 99.492 631130275 23849 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-31 20:13:53] CVMFS is ok
[2025-05-31 20:13:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-31 20:13:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-31 20:13:53] Further information can be found at the LHC@home message board.
[2025-05-31 20:13:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-31 20:13:53] Checking for apptainer binary...
[2025-05-31 20:13:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-31 20:13:53] Running /usr/bin/apptainer --version
[2025-05-31 20:13:53] apptainer version 1.4.1-1.el9
[2025-05-31 20:13:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-31 20:13:54] c-16-35.aglt2.org
[2025-05-31 20:13:54] apptainer works
[2025-05-31 20:13:54] Set ATHENA_PROC_NUMBER=12
[2025-05-31 20:13:54] Set ATHENA_CORE_NUMBER=12
[2025-05-31 20:13:54] Starting ATLAS job with PandaID=6666906546
[2025-05-31 20:13:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-01 00:39:01]  *** The last 200 lines of the pilot log: ***
[2025-06-01 00:39:01] 2025-06-01 04:38:26,908 | INFO     | extracted standard info from prmon json
[2025-06-01 00:39:01] 2025-06-01 04:38:26,908 | INFO     | extracted standard memory fields from prmon json
[2025-06-01 00:39:01] 2025-06-01 04:38:26,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-01 00:39:01] 2025-06-01 04:38:26,909 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-01 00:39:01] 2025-06-01 04:38:26,909 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-01 00:39:01] 2025-06-01 04:38:26,915 | INFO     | fitting pss+swap vs Time
[2025-06-01 00:39:01] 2025-06-01 04:38:26,916 | INFO     | sum of square deviations: 5325245756.174442
[2025-06-01 00:39:01] 2025-06-01 04:38:26,918 | INFO     | sum of deviations: -24940731683.209312
[2025-06-01 00:39:01] 2025-06-01 04:38:26,918 | INFO     | mean x: 1748744796.1046512
[2025-06-01 00:39:01] 2025-06-01 04:38:26,919 | INFO     | mean y: 2423950.007751938
[2025-06-01 00:39:01] 2025-06-01 04:38:26,919 | INFO     | -- intersect: 8192651544.947309
[2025-06-01 00:39:01] 2025-06-01 04:38:26,919 | INFO     | intersect: 8192651544.947309
[2025-06-01 00:39:01] 2025-06-01 04:38:26,920 | INFO     | chi2: 3.2050887003588406
[2025-06-01 00:39:01] 2025-06-01 04:38:26,920 | INFO     | sum of square deviations: 5021650431.810292
[2025-06-01 00:39:01] 2025-06-01 04:38:26,922 | INFO     | sum of deviations: -16521299171.114647
[2025-06-01 00:39:01] 2025-06-01 04:38:26,923 | INFO     | mean x: 1748744643.6166008
[2025-06-01 00:39:01] 2025-06-01 04:38:26,923 | INFO     | mean y: 2428166.122529644
[2025-06-01 00:39:01] 2025-06-01 04:38:26,923 | INFO     | -- intersect: 5755822159.471207
[2025-06-01 00:39:01] 2025-06-01 04:38:26,923 | INFO     | intersect: 5755822159.471207
[2025-06-01 00:39:01] 2025-06-01 04:38:26,924 | INFO     | chi2: 3.1816002320774746
[2025-06-01 00:39:01] 2025-06-01 04:38:26,924 | INFO     | current chi2=3.1816002320774746 (change=0.732849243103204 %)
[2025-06-01 00:39:01] 2025-06-01 04:38:26,924 | INFO     | right removable region: 252
[2025-06-01 00:39:01] 2025-06-01 04:38:26,924 | INFO     | sum of square deviations: 5021555271.810292
[2025-06-01 00:39:01] 2025-06-01 04:38:26,927 | INFO     | sum of deviations: -84901738171.36758
[2025-06-01 00:39:01] 2025-06-01 04:38:26,927 | INFO     | mean x: 1748744948.6166008
[2025-06-01 00:39:01] 2025-06-01 04:38:26,927 | INFO     | mean y: 2453946.9446640317
[2025-06-01 00:39:01] 2025-06-01 04:38:26,927 | INFO     | -- intersect: 29569286874.07158
[2025-06-01 00:39:01] 2025-06-01 04:38:26,927 | INFO     | intersect: 29569286874.07158
[2025-06-01 00:39:01] 2025-06-01 04:38:26,928 | INFO     | chi2: 0.7344517305203803
[2025-06-01 00:39:01] 2025-06-01 04:38:26,928 | INFO     | current chi2=0.7344517305203803 (change=77.08482356703104 %)
[2025-06-01 00:39:01] 2025-06-01 04:38:26,929 | INFO     | sum of square deviations: 4729632449.870947
[2025-06-01 00:39:01] 2025-06-01 04:38:26,931 | INFO     | sum of deviations: -102293706930.41933
[2025-06-01 00:39:01] 2025-06-01 04:38:26,931 | INFO     | mean x: 1748745101.1290324
[2025-06-01 00:39:01] 2025-06-01 04:38:26,931 | INFO     | mean y: 2463006.794354839
[2025-06-01 00:39:01] 2025-06-01 04:38:26,931 | INFO     | -- intersect: 37824771773.25693
[2025-06-01 00:39:01] 2025-06-01 04:38:26,932 | INFO     | intersect: 37824771773.25693
[2025-06-01 00:39:01] 2025-06-01 04:38:26,932 | INFO     | chi2: 0.4414250255140293
[2025-06-01 00:39:01] 2025-06-01 04:38:26,932 | INFO     | current chi2=0.4414250255140293 (change=39.897340128633516 %)
[2025-06-01 00:39:01] 2025-06-01 04:38:26,933 | INFO     | sum of square deviations: 4449305360.921793
[2025-06-01 00:39:01] 2025-06-01 04:38:26,935 | INFO     | sum of deviations: -95873153510.93832
[2025-06-01 00:39:01] 2025-06-01 04:38:26,935 | INFO     | mean x: 1748745253.6255145
[2025-06-01 00:39:01] 2025-06-01 04:38:26,936 | INFO     | mean y: 2459498.5061728396
[2025-06-01 00:39:01] 2025-06-01 04:38:26,936 | INFO     | -- intersect: 37684234191.899864
[2025-06-01 00:39:01] 2025-06-01 04:38:26,936 | INFO     | intersect: 37684234191.899864
[2025-06-01 00:39:01] 2025-06-01 04:38:26,936 | INFO     | chi2: 0.4366996728325488
[2025-06-01 00:39:01] 2025-06-01 04:38:26,937 | INFO     | current chi2=0.4366996728325488 (change=1.070476843939225 %)
[2025-06-01 00:39:01] 2025-06-01 04:38:26,937 | INFO     | left removable region: 30
[2025-06-01 00:39:01] 2025-06-01 04:38:26,937 | INFO     | sum of square deviations: 3392683691.7162094
[2025-06-01 00:39:01] 2025-06-01 04:38:26,939 | INFO     | sum of deviations: -59423956447.70273
[2025-06-01 00:39:01] 2025-06-01 04:38:26,939 | INFO     | mean x: 1748745528.1216216
[2025-06-01 00:39:01] 2025-06-01 04:38:26,939 | INFO     | mean y: 2448327.063063063
[2025-06-01 00:39:01] 2025-06-01 04:38:26,940 | INFO     | -- intersect: 30632294060.97141
[2025-06-01 00:39:01] 2025-06-01 04:38:26,940 | INFO     | intersect: 30632294060.97141
[2025-06-01 00:39:01] 2025-06-01 04:38:26,940 | INFO     | chi2: 0.37881308712875905
[2025-06-01 00:39:01] 2025-06-01 04:38:26,940 | INFO     | -- intersect: 30632294060.97141
[2025-06-01 00:39:01] 2025-06-01 04:38:26,941 | INFO     | current memory leak: -17.52 B/s (using 222 data points, chi2=0.38)
[2025-06-01 00:39:01] 2025-06-01 04:38:26,941 | INFO     | ..............................
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . Timing measurements:
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . get job = 0 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . initial setup = 5 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . payload setup = 25 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . stage-in = 0 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . payload execution = 15749 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,942 | INFO     | . stage-out = 4 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,943 | INFO     | . log creation = 0 s
[2025-06-01 00:39:01] 2025-06-01 04:38:26,943 | INFO     | ..............................
[2025-06-01 00:39:01] 2025-06-01 04:38:27,070 | INFO     | 
[2025-06-01 00:39:01] 2025-06-01 04:38:27,070 | INFO     | job summary report
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | --------------------------------------------------
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | PanDA job id: 6666906546
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | task id: 44871837
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | errors: (none)
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | pilot state: finished 
[2025-06-01 00:39:01] 2025-06-01 04:38:27,071 | INFO     | transexitcode: 0
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | exeerrorcode: 0
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | exeerrordiag: 
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | exitcode: 0
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | exitmsg: OK
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | cpuconsumptiontime: 71292 s
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | nevents: 400
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | neventsw: 0
[2025-06-01 00:39:01] 2025-06-01 04:38:27,072 | INFO     | pid: 3836451
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | pgrp: 3836451
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | corecount: 12
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | event service: False
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | sizes: {0: 2405007, 1: 2405262, 2: 2405262, 13: 2405552, 23: 2405552, 15776: 2436444, 15780: 2445385, 15781: 2445441, 15798: 2445611}
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | --------------------------------------------------
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | 
[2025-06-01 00:39:01] 2025-06-01 04:38:27,073 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-01 00:39:01] 2025-06-01 04:38:27,096 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,096 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,099 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-01 00:39:01] 2025-06-01 04:38:27,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-01 00:39:01] 2025-06-01 04:38:27,099 | INFO     | job 6666906546 has completed (purged errors)
[2025-06-01 00:39:01] 2025-06-01 04:38:27,099 | INFO     | overall cleanup function is called
[2025-06-01 00:39:01] 2025-06-01 04:38:28,109 | INFO     | --- collectZombieJob: --- 10, [3836451]
[2025-06-01 00:39:01] 2025-06-01 04:38:28,109 | INFO     | zombie collector waiting for pid 3836451
[2025-06-01 00:39:01] 2025-06-01 04:38:28,109 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-01 00:39:01] 2025-06-01 04:38:28,109 | INFO     | collected zombie processes
[2025-06-01 00:39:01] 2025-06-01 04:38:28,109 | INFO     | will attempt to kill all subprocesses of pid=3836451
[2025-06-01 00:39:01] 2025-06-01 04:38:28,643 | INFO     | process IDs to be killed: [3836451] (in reverse order)
[2025-06-01 00:39:01] 2025-06-01 04:38:28,786 | WARNING  | found no corresponding commands to process id(s)
[2025-06-01 00:39:01] 2025-06-01 04:38:28,787 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-01 00:39:01] 2025-06-01 04:38:28,801 | INFO     | did not find any defunct processes belonging to 3836451
[2025-06-01 00:39:01] 2025-06-01 04:38:28,816 | INFO     | did not find any defunct processes belonging to 3836451
[2025-06-01 00:39:01] 2025-06-01 04:38:28,816 | INFO     | ready for new job
[2025-06-01 00:39:01] 2025-06-01 04:38:28,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-01 00:39:01] 2025-06-01 04:38:28,819 | INFO     | **************************************
[2025-06-01 00:39:01] 2025-06-01 04:38:28,819 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-01 00:39:01] 2025-06-01 04:38:28,819 | INFO     | **************************************
[2025-06-01 00:39:01] 2025-06-01 04:38:28,820 | INFO     | 
[2025-06-01 00:39:01] 2025-06-01 04:38:28,835 | INFO     | architecture information:
[2025-06-01 00:39:01] 2025-06-01 04:38:28,835 | INFO     | executing command: cat /etc/os-release
[2025-06-01 00:39:01] 2025-06-01 04:38:28,853 | INFO     | cat /etc/os-release:
[2025-06-01 00:39:01] NAME="CentOS Linux"
[2025-06-01 00:39:01] VERSION="7 (Core)"
[2025-06-01 00:39:01] ID="centos"
[2025-06-01 00:39:01] ID_LIKE="rhel fedora"
[2025-06-01 00:39:01] VERSION_ID="7"
[2025-06-01 00:39:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-01 00:39:01] ANSI_COLOR="0;31"
[2025-06-01 00:39:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-01 00:39:01] HOME_URL="https://www.centos.org/"
[2025-06-01 00:39:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-01 00:39:01] 
[2025-06-01 00:39:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-01 00:39:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-01 00:39:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-01 00:39:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-01 00:39:01] 
[2025-06-01 00:39:01] 2025-06-01 04:38:28,853 | INFO     | **************************************
[2025-06-01 00:39:01] 2025-06-01 04:38:29,357 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-01 00:39:01] 2025-06-01 04:38:29,515 | INFO     | sufficient remaining disk space (64550338560 B)
[2025-06-01 00:39:01] 2025-06-01 04:38:29,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-01 00:39:01] 2025-06-01 04:38:29,516 | INFO     | current server update state: UPDATING_FINAL
[2025-06-01 00:39:01] 2025-06-01 04:38:29,516 | INFO     | update_server=False
[2025-06-01 00:39:01] 2025-06-01 04:38:29,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-01 00:39:01] 2025-06-01 04:38:29,525 | INFO     | all data control threads have been joined
[2025-06-01 00:39:01] 2025-06-01 04:38:29,547 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-01 00:39:01] 2025-06-01 04:38:29,787 | INFO     | all job control threads have been joined
[2025-06-01 00:39:01] 2025-06-01 04:38:29,805 | INFO     | all payload control threads have been joined
[2025-06-01 00:39:01] 2025-06-01 04:38:30,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-01 00:39:01] 2025-06-01 04:38:30,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-01 00:39:01] 2025-06-01 04:38:30,302 | INFO     | aborting loop
[2025-06-01 00:39:01] 2025-06-01 04:38:30,488 | INFO     | PID=3825604 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-01 00:39:01] 2025-06-01 04:38:30,488 | INFO     | .. there are 8 such processes running
[2025-06-01 00:39:01] 2025-06-01 04:38:30,488 | INFO     | found 0 job(s) in 20 queues
[2025-06-01 00:39:01] 2025-06-01 04:38:30,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-01 00:39:01] 2025-06-01 04:38:30,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-01 00:39:01] 2025-06-01 04:38:30,522 | INFO     | [job] retrieve thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:30,531 | INFO     | [data] control thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:30,798 | INFO     | [job] control thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:30,810 | INFO     | [payload] control thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:30,838 | INFO     | [payload] failed_post thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:30,863 | INFO     | [job] create_data_payload thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:30,891 | INFO     | [payload] validate_pre thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:31,308 | INFO     | [job] job monitor thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:31,388 | INFO     | [job] validate thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:31,569 | INFO     | [data] copytool_in thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:31,646 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:31,769 | INFO     | [payload] execute_payloads thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:32,005 | INFO     | [payload] validate_post thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:32,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-01 00:39:01] 2025-06-01 04:38:32,187 | INFO     | [data] copytool_out thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:33,093 | INFO     | [job] queue monitor thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:33,556 | INFO     | [data] queue_monitor thread has finished
[2025-06-01 00:39:01] 2025-06-01 04:38:35,511 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403194582848)>', '<ExcThread(monitor, started 140402841593600)>']
[2025-06-01 00:39:01] 2025-06-01 04:38:35,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-01 00:39:01] 2025-06-01 04:38:35,519 | INFO     | [monitor] control thread has ended
[2025-06-01 00:39:01] 2025-06-01 04:38:40,537 | INFO     | all workflow threads have been joined
[2025-06-01 00:39:01] 2025-06-01 04:38:40,537 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-01 00:39:01] 2025-06-01 04:38:40,537 | INFO     | traces error code: 0
[2025-06-01 00:39:01] 2025-06-01 04:38:40,538 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-01 00:39:01] 2025-06-01 04:38:41,095 [wrapper] ==== pilot stdout END ====
[2025-06-01 00:39:01] 2025-06-01 04:38:41,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-01 00:39:01] 2025-06-01 04:38:41,156 [wrapper] pilotpid: 3825604
[2025-06-01 00:39:01] 2025-06-01 04:38:41,205 [wrapper] Pilot exit status: 0
[2025-06-01 00:39:01] 2025-06-01 04:38:41,367 [wrapper] pandaids: 6666906546
[2025-06-01 00:39:01] 2025-06-01 04:38:41,557 [wrapper] cleanup supervisor_pilot  849100 3825605
[2025-06-01 00:39:01] 2025-06-01 04:38:41,560 [wrapper] Test setup, not cleaning
[2025-06-01 00:39:01] 2025-06-01 04:38:41,563 [wrapper] apfmon messages muted
[2025-06-01 00:39:01] 2025-06-01 04:38:41,565 [wrapper] ==== wrapper stdout END ====
[2025-06-01 00:39:01] 2025-06-01 04:38:41,568 [wrapper] ==== wrapper stderr END ====
[2025-06-01 00:39:01]  *** Error codes and diagnostics ***
[2025-06-01 00:39:01]     "exeErrorCode": 0,
[2025-06-01 00:39:01]     "exeErrorDiag": "",
[2025-06-01 00:39:01]     "pilotErrorCode": 0,
[2025-06-01 00:39:01]     "pilotErrorDiag": "",
[2025-06-01 00:39:01]  *** Listing of results directory ***
[2025-06-01 00:39:01] total 415560
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas    495897 May 27 05:27 pilot3.tar.gz
[2025-06-01 00:39:01] -rwx------. 1 boincer umatlas     37140 May 27 06:23 runpilot2-wrapper.sh
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas      5111 May 27 06:23 queuedata.json
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas       100 May 31 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-01 00:39:01] -rwxr-xr-x. 1 boincer umatlas      7986 May 31 20:13 run_atlas
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas       105 May 31 20:13 job.xml
[2025-06-01 00:39:01] -rw-r--r--. 2 boincer umatlas 223913464 May 31 20:13 EVNT.44871834._002592.pool.root.1
[2025-06-01 00:39:01] -rw-r--r--. 2 boincer umatlas     15093 May 31 20:13 start_atlas.sh
[2025-06-01 00:39:01] drwxrwx--x. 2 boincer umatlas      4096 May 31 20:13 shared
[2025-06-01 00:39:01] -rw-r--r--. 2 boincer umatlas    508873 May 31 20:13 input.tar.gz
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas         0 May 31 20:13 boinc_lockfile
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas      2559 May 31 20:13 pandaJob.out
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas    987412 May 31 20:14 agis_schedconf.cvmfs.json
[2025-06-01 00:39:01] drwx------. 4 boincer umatlas      4096 May 31 20:14 pilot3
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas 194275547 Jun  1 00:37 HITS.44871837._065819.pool.root.1
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas       531 Jun  1 00:37 boinc_task_state.xml
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas        95 Jun  1 00:37 pilot_heartbeat.json
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas      1042 Jun  1 00:38 memory_monitor_summary.json
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas   1603667 Jun  1 00:38 agis_ddmendpoints.agis.ALL.json
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas    465334 Jun  1 00:38 log.44871837._065819.job.log.tgz.1
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas      7725 Jun  1 00:38 heartbeat.json
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas      6613 Jun  1 00:38 init_data.xml
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas      4748 Jun  1 00:38 pilotlog.txt
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas   1288471 Jun  1 00:38 log.44871837._065819.job.log.1
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas       357 Jun  1 00:38 output.list
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas       620 Jun  1 00:38 runtime_log
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas   1771520 Jun  1 00:38 result.tar.gz
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas      8657 Jun  1 00:38 runtime_log.err
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas       656 Jun  1 00:38 DP7LDmwd6d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk7YKDm5SylRm.diag
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas      8192 Jun  1 00:39 boinc_mmap_file
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas        28 Jun  1 00:39 wrapper_checkpoint.txt
[2025-06-01 00:39:01] -rw-r--r--. 1 boincer umatlas     20980 Jun  1 00:39 stderr.txt
[2025-06-01 00:39:01] HITS file was successfully produced:
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas 194275547 Jun  1 00:37 shared/HITS.pool.root.1
[2025-06-01 00:39:01]  *** Contents of shared directory: ***
[2025-06-01 00:39:01] total 410644
[2025-06-01 00:39:01] -rw-r--r--. 2 boincer umatlas 223913464 May 31 20:13 ATLAS.root_0
[2025-06-01 00:39:01] -rw-r--r--. 2 boincer umatlas     15093 May 31 20:13 start_atlas.sh
[2025-06-01 00:39:01] -rw-r--r--. 2 boincer umatlas    508873 May 31 20:13 input.tar.gz
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas 194275547 Jun  1 00:37 HITS.pool.root.1
[2025-06-01 00:39:01] -rw-------. 1 boincer umatlas   1771520 Jun  1 00:38 result.tar.gz
00:39:03 (3820215): run_atlas exited; CPU time 71846.138383
00:39:03 (3820215): called boinc_finish(0)

</stderr_txt>
]]>

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