Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:54:40 (3719): wrapper (7.7.26015): starting
07:54:40 (3719): wrapper: running run_atlas (--nthreads 8)
[2025-05-31 07:54:40] Arguments: --nthreads 8
[2025-05-31 07:54:40] Threads: 8
[2025-05-31 07:54:40] Checking for CVMFS
[2025-05-31 07:54:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-31 07:54:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-31 07:54:41] Running cvmfs_config stat atlas.cern.ch
[2025-05-31 07:54:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-31 07:54:42] 2.11.2.0 26867 27054 92184 146624 1 16 20278432 25165825 4634 130560 0 14482068 99.836 15192994 1797 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-31 07:54:42] CVMFS is ok
[2025-05-31 07:54:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-31 07:54:42] Checking for apptainer binary...
[2025-05-31 07:54:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-31 07:54:42] Running /usr/bin/apptainer --version
[2025-05-31 07:54:42] apptainer version 1.3.2-1.el7
[2025-05-31 07:54:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-31 07:54:56] cg-vwn435.simple-grid.lan
[2025-05-31 07:54:56] apptainer works
[2025-05-31 07:54:56] Set ATHENA_PROC_NUMBER=8
[2025-05-31 07:54:56] Set ATHENA_CORE_NUMBER=8
[2025-05-31 07:54:56] Starting ATLAS job with PandaID=6668863682
[2025-05-31 07:54:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-31 13:01:29]  *** The last 200 lines of the pilot log: ***
[2025-05-31 13:01:29] 2025-05-31 11:01:06,320 | INFO     | monitor loop #1300: job 0:6668863682 is in state 'finished'
[2025-05-31 13:01:29] 2025-05-31 11:01:06,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 13:01:29] 2025-05-31 11:01:08,825 | INFO     | monitor loop #1301: job 0:6668863682 is in state 'finished'
[2025-05-31 13:01:29] 2025-05-31 11:01:08,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 13:01:29] 2025-05-31 11:01:11,330 | INFO     | monitor loop #1302: job 0:6668863682 is in state 'finished'
[2025-05-31 13:01:29] 2025-05-31 11:01:11,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,169 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-31 13:01:29] 2025-05-31 11:01:13,169 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6668863682/memory_monitor_summary.json (trf name=prmon)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,170 | INFO     | extracted standard info from prmon json
[2025-05-31 13:01:29] 2025-05-31 11:01:13,170 | INFO     | extracted standard memory fields from prmon json
[2025-05-31 13:01:29] 2025-05-31 11:01:13,170 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-31 13:01:29] 2025-05-31 11:01:13,171 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-31 13:01:29] 2025-05-31 11:01:13,171 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-31 13:01:29] 2025-05-31 11:01:13,176 | INFO     | fitting pss+swap vs Time
[2025-05-31 13:01:29] 2025-05-31 11:01:13,177 | INFO     | sum of square deviations: 7484568240.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,180 | INFO     | sum of deviations: 92719203157.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,180 | INFO     | mean x: 1748680425.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,180 | INFO     | mean y: 2461197.0138408304
[2025-05-31 13:01:29] 2025-05-31 11:01:13,180 | INFO     | -- intersect: -21660278774.50977
[2025-05-31 13:01:29] 2025-05-31 11:01:13,180 | INFO     | intersect: -21660278774.50977
[2025-05-31 13:01:29] 2025-05-31 11:01:13,181 | INFO     | chi2: 4.548750105131157
[2025-05-31 13:01:29] 2025-05-31 11:01:13,181 | INFO     | sum of square deviations: 7102775035.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,184 | INFO     | sum of deviations: 111300258613.5
[2025-05-31 13:01:29] 2025-05-31 11:01:13,187 | INFO     | mean x: 1748680272.5
[2025-05-31 13:01:29] 2025-05-31 11:01:13,188 | INFO     | mean y: 2468504.186619718
[2025-05-31 13:01:29] 2025-05-31 11:01:13,188 | INFO     | -- intersect: -27399295679.88424
[2025-05-31 13:01:29] 2025-05-31 11:01:13,188 | INFO     | intersect: -27399295679.88424
[2025-05-31 13:01:29] 2025-05-31 11:01:13,188 | INFO     | chi2: 3.6954576119426426
[2025-05-31 13:01:29] 2025-05-31 11:01:13,188 | INFO     | current chi2=3.6954576119426426 (change=18.75883426143743 %)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,189 | INFO     | right removable region: 283
[2025-05-31 13:01:29] 2025-05-31 11:01:13,189 | INFO     | sum of square deviations: 7102775035.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,192 | INFO     | sum of deviations: 7011305596.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,192 | INFO     | mean x: 1748680577.5
[2025-05-31 13:01:29] 2025-05-31 11:01:13,192 | INFO     | mean y: 2495332.028169014
[2025-05-31 13:01:29] 2025-05-31 11:01:13,192 | INFO     | -- intersect: -1723665761.0976338
[2025-05-31 13:01:29] 2025-05-31 11:01:13,192 | INFO     | intersect: -1723665761.0976338
[2025-05-31 13:01:29] 2025-05-31 11:01:13,193 | INFO     | chi2: 0.956313645797311
[2025-05-31 13:01:29] 2025-05-31 11:01:13,193 | INFO     | current chi2=0.956313645797311 (change=78.9763424304502 %)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,193 | INFO     | sum of square deviations: 6734191380.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,196 | INFO     | sum of deviations: -2626524336.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,196 | INFO     | mean x: 1748680730.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,196 | INFO     | mean y: 2499297.017921147
[2025-05-31 13:01:29] 2025-05-31 11:01:13,196 | INFO     | -- intersect: 684534040.9190136
[2025-05-31 13:01:29] 2025-05-31 11:01:13,196 | INFO     | intersect: 684534040.9190136
[2025-05-31 13:01:29] 2025-05-31 11:01:13,196 | INFO     | chi2: 0.9001295514976968
[2025-05-31 13:01:29] 2025-05-31 11:01:13,197 | INFO     | current chi2=0.9001295514976968 (change=5.875069810676147 %)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,197 | INFO     | left removable region: 20
[2025-05-31 13:01:29] 2025-05-31 11:01:13,197 | INFO     | sum of square deviations: 5640782972.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,199 | INFO     | sum of deviations: 11477835030.000002
[2025-05-31 13:01:29] 2025-05-31 11:01:13,200 | INFO     | mean x: 1748680852.0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,200 | INFO     | mean y: 2509949.596958175
[2025-05-31 13:01:29] 2025-05-31 11:01:13,200 | INFO     | -- intersect: -3555696497.8068204
[2025-05-31 13:01:29] 2025-05-31 11:01:13,200 | INFO     | intersect: -3555696497.8068204
[2025-05-31 13:01:29] 2025-05-31 11:01:13,200 | INFO     | chi2: 0.0008409935332741526
[2025-05-31 13:01:29] 2025-05-31 11:01:13,200 | INFO     | -- intersect: -3555696497.8068204
[2025-05-31 13:01:29] 2025-05-31 11:01:13,201 | INFO     | current memory leak: 2.03 B/s (using 263 data points, chi2=0.00)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | ..............................
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . Timing measurements:
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . get job = 0 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . initial setup = 7 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . payload setup = 192 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . stage-in = 0 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . payload execution = 17763 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . stage-out = 1 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,202 | INFO     | . log creation = 0 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,203 | INFO     | ..............................
[2025-05-31 13:01:29] 2025-05-31 11:01:13,334 | INFO     | 
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | job summary report
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | --------------------------------------------------
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | PanDA job id: 6668863682
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | task id: 44871837
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | errors: (none)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | pilot state: finished 
[2025-05-31 13:01:29] 2025-05-31 11:01:13,335 | INFO     | transexitcode: 0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | exeerrorcode: 0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | exeerrordiag: 
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | exitcode: 0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | exitmsg: OK
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | cpuconsumptiontime: 66062 s
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | nevents: 400
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | neventsw: 0
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | pid: 16523
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | pgrp: 16523
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | corecount: 8
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | event service: False
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 23: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 66: 2405558, 76: 2405586, 87: 2405642, 92: 2405876, 98: 2406184, 1
[2025-05-31 13:01:29] 2025-05-31 11:01:13,336 | INFO     | --------------------------------------------------
[2025-05-31 13:01:29] 2025-05-31 11:01:13,337 | INFO     | 
[2025-05-31 13:01:29] 2025-05-31 11:01:13,337 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-05-31 13:01:29] 2025-05-31 11:01:13,403 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-31 13:01:29] 2025-05-31 11:01:13,405 | INFO     | job 6668863682 has completed (purged errors)
[2025-05-31 13:01:29] 2025-05-31 11:01:13,406 | INFO     | overall cleanup function is called
[2025-05-31 13:01:29] 2025-05-31 11:01:14,417 | INFO     | --- collectZombieJob: --- 10, [16523]
[2025-05-31 13:01:29] 2025-05-31 11:01:14,417 | INFO     | zombie collector waiting for pid 16523
[2025-05-31 13:01:29] 2025-05-31 11:01:14,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-31 13:01:29] 2025-05-31 11:01:14,418 | INFO     | collected zombie processes
[2025-05-31 13:01:29] 2025-05-31 11:01:14,418 | INFO     | will attempt to kill all subprocesses of pid=16523
[2025-05-31 13:01:29] 2025-05-31 11:01:14,510 | INFO     | process IDs to be killed: [16523] (in reverse order)
[2025-05-31 13:01:29] 2025-05-31 11:01:14,752 | WARNING  | found no corresponding commands to process id(s)
[2025-05-31 13:01:29] 2025-05-31 11:01:14,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-31 13:01:29] 2025-05-31 11:01:14,756 | INFO     | did not find any defunct processes belonging to 16523
[2025-05-31 13:01:29] 2025-05-31 11:01:14,759 | INFO     | did not find any defunct processes belonging to 16523
[2025-05-31 13:01:29] 2025-05-31 11:01:14,760 | INFO     | ready for new job
[2025-05-31 13:01:29] 2025-05-31 11:01:14,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-31 13:01:29] 2025-05-31 11:01:14,763 | INFO     | **************************************
[2025-05-31 13:01:29] 2025-05-31 11:01:14,763 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-31 13:01:29] 2025-05-31 11:01:14,763 | INFO     | **************************************
[2025-05-31 13:01:29] 2025-05-31 11:01:14,763 | INFO     | 
[2025-05-31 13:01:29] 2025-05-31 11:01:14,764 | INFO     | pilot is running in a VM
[2025-05-31 13:01:29] 2025-05-31 11:01:14,764 | INFO     | architecture information:
[2025-05-31 13:01:29] 2025-05-31 11:01:14,765 | INFO     | executing command: cat /etc/os-release
[2025-05-31 13:01:29] 2025-05-31 11:01:14,797 | INFO     | cat /etc/os-release:
[2025-05-31 13:01:29] NAME="CentOS Linux"
[2025-05-31 13:01:29] VERSION="7 (Core)"
[2025-05-31 13:01:29] ID="centos"
[2025-05-31 13:01:29] ID_LIKE="rhel fedora"
[2025-05-31 13:01:29] VERSION_ID="7"
[2025-05-31 13:01:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-31 13:01:29] ANSI_COLOR="0;31"
[2025-05-31 13:01:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-31 13:01:29] HOME_URL="https://www.centos.org/"
[2025-05-31 13:01:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-31 13:01:29] 
[2025-05-31 13:01:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-31 13:01:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-31 13:01:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-31 13:01:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-31 13:01:29] 
[2025-05-31 13:01:29] 2025-05-31 11:01:14,798 | INFO     | **************************************
[2025-05-31 13:01:29] 2025-05-31 11:01:15,301 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-05-31 13:01:29] 2025-05-31 11:01:15,353 | INFO     | sufficient remaining disk space (495994273792 B)
[2025-05-31 13:01:29] 2025-05-31 11:01:15,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-31 13:01:29] 2025-05-31 11:01:15,353 | INFO     | current server update state: UPDATING_FINAL
[2025-05-31 13:01:29] 2025-05-31 11:01:15,354 | INFO     | update_server=False
[2025-05-31 13:01:29] 2025-05-31 11:01:15,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-31 13:01:29] 2025-05-31 11:01:15,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-31 13:01:29] 2025-05-31 11:01:15,354 | INFO     | aborting loop
[2025-05-31 13:01:29] 2025-05-31 11:01:15,355 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-31 13:01:29] 2025-05-31 11:01:15,356 | INFO     | found 0 job(s) in 20 queues
[2025-05-31 13:01:29] 2025-05-31 11:01:15,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-31 13:01:29] 2025-05-31 11:01:15,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-31 13:01:29] 2025-05-31 11:01:16,136 | INFO     | all data control threads have been joined
[2025-05-31 13:01:29] 2025-05-31 11:01:16,305 | INFO     | all payload control threads have been joined
[2025-05-31 13:01:29] 2025-05-31 11:01:16,359 | INFO     | [job] retrieve thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:16,359 | INFO     | [job] job monitor thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:16,363 | INFO     | [payload] validate_post thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:16,420 | INFO     | all job control threads have been joined
[2025-05-31 13:01:29] 2025-05-31 11:01:16,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-31 13:01:29] 2025-05-31 11:01:16,592 | INFO     | [payload] failed_post thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:16,609 | INFO     | [job] create_data_payload thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:16,730 | INFO     | [payload] validate_pre thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,142 | INFO     | [data] control thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,311 | INFO     | [payload] control thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,385 | INFO     | [payload] execute_payloads thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,397 | INFO     | [data] copytool_in thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,426 | INFO     | [job] control thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:17,442 | INFO     | [job] validate thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:18,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-31 13:01:29] 2025-05-31 11:01:18,577 | INFO     | [data] copytool_out thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:18,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-31 13:01:29] 2025-05-31 11:01:19,356 | INFO     | [job] queue monitor thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:22,598 | INFO     | [data] queue_monitor thread has finished
[2025-05-31 13:01:29] 2025-05-31 11:01:24,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020531058496)>', '<ExcThread(monitor, started 140019960379136)>']
[2025-05-31 13:01:29] 2025-05-31 11:01:24,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-31 13:01:29] 2025-05-31 11:01:24,412 | INFO     | [monitor] control thread has ended
[2025-05-31 13:01:29] 2025-05-31 11:01:29,218 | INFO     | all workflow threads have been joined
[2025-05-31 13:01:29] 2025-05-31 11:01:29,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-31 13:01:29] 2025-05-31 11:01:29,219 | INFO     | traces error code: 0
[2025-05-31 13:01:29] 2025-05-31 11:01:29,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-31 13:01:29] 2025-05-31 11:01:29,482 [wrapper] ==== pilot stdout END ====
[2025-05-31 13:01:29] 2025-05-31 11:01:29,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-31 13:01:29] 2025-05-31 11:01:29,495 [wrapper] pilotpid: 9921
[2025-05-31 13:01:29] 2025-05-31 11:01:29,498 [wrapper] Pilot exit status: 0
[2025-05-31 13:01:29] 2025-05-31 11:01:29,527 [wrapper] pandaids: 6668863682
[2025-05-31 13:01:29] 2025-05-31 11:01:29,568 [wrapper] cleanup supervisor_pilot  2861 9922
[2025-05-31 13:01:29] 2025-05-31 11:01:29,589 [wrapper] Test setup, not cleaning
[2025-05-31 13:01:29] 2025-05-31 11:01:29,604 [wrapper] apfmon messages muted
[2025-05-31 13:01:29] 2025-05-31 11:01:29,612 [wrapper] ==== wrapper stdout END ====
[2025-05-31 13:01:29] 2025-05-31 11:01:29,616 [wrapper] ==== wrapper stderr END ====
[2025-05-31 13:01:29]  *** Error codes and diagnostics ***
[2025-05-31 13:01:29]     "exeErrorCode": 0,
[2025-05-31 13:01:29]     "exeErrorDiag": "",
[2025-05-31 13:01:29]     "pilotErrorCode": 0,
[2025-05-31 13:01:29]     "pilotErrorDiag": "",
[2025-05-31 13:01:29]  *** Listing of results directory ***
[2025-05-31 13:01:29] total 423056
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc    495897 May 28 22:14 pilot3.tar.gz
[2025-05-31 13:01:29] -rwx------. 1 boinc boinc     37140 May 28 22:40 runpilot2-wrapper.sh
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc      5111 May 28 22:40 queuedata.json
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc       100 May 31 07:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-31 13:01:29] -rwxr-xr-x. 1 boinc boinc      7986 May 31 07:54 run_atlas
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc       105 May 31 07:54 job.xml
[2025-05-31 13:01:29] -rw-r--r--. 2 boinc boinc 225736704 May 31 07:54 EVNT.44871834._003505.pool.root.1
[2025-05-31 13:01:29] -rw-r--r--. 2 boinc boinc    508878 May 31 07:54 input.tar.gz
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc      6371 May 31 07:54 init_data.xml
[2025-05-31 13:01:29] -rw-r--r--. 2 boinc boinc     15093 May 31 07:54 start_atlas.sh
[2025-05-31 13:01:29] drwxrwx--x. 2 boinc boinc        68 May 31 07:54 shared
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc         0 May 31 07:54 boinc_lockfile
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc      2559 May 31 07:54 pandaJob.out
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc    987388 May 31 07:58 agis_schedconf.cvmfs.json
[2025-05-31 13:01:29] drwx------. 4 boinc boinc      4096 May 31 07:58 pilot3
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc 199693149 May 31 13:00 HITS.44871837._090085.pool.root.1
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc        95 May 31 13:00 pilot_heartbeat.json
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc       531 May 31 13:00 boinc_task_state.xml
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc      1019 May 31 13:00 memory_monitor_summary.json
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc   1603667 May 31 13:00 agis_ddmendpoints.agis.ALL.json
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc    429722 May 31 13:00 log.44871837._090085.job.log.tgz.1
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc      7693 May 31 13:01 heartbeat.json
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc      8192 May 31 13:01 boinc_mmap_file
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc        28 May 31 13:01 wrapper_checkpoint.txt
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc      4539 May 31 13:01 pilotlog.txt
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc   1546325 May 31 13:01 log.44871837._090085.job.log.1
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc       357 May 31 13:01 output.list
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc       620 May 31 13:01 runtime_log
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc   1996800 May 31 13:01 result.tar.gz
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc      8659 May 31 13:01 runtime_log.err
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc       657 May 31 13:01 lEtLDm9kce7n9Rq4apOajLDm4fhM0noT9bVof3QYDmh5TKDmfCxJOn.diag
[2025-05-31 13:01:29] -rw-r--r--. 1 boinc boinc     20786 May 31 13:01 stderr.txt
[2025-05-31 13:01:29] HITS file was successfully produced:
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc 199693149 May 31 13:00 shared/HITS.pool.root.1
[2025-05-31 13:01:29]  *** Contents of shared directory: ***
[2025-05-31 13:01:29] total 417932
[2025-05-31 13:01:29] -rw-r--r--. 2 boinc boinc 225736704 May 31 07:54 ATLAS.root_0
[2025-05-31 13:01:29] -rw-r--r--. 2 boinc boinc    508878 May 31 07:54 input.tar.gz
[2025-05-31 13:01:29] -rw-r--r--. 2 boinc boinc     15093 May 31 07:54 start_atlas.sh
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc 199693149 May 31 13:00 HITS.pool.root.1
[2025-05-31 13:01:29] -rw-------. 1 boinc boinc   1996800 May 31 13:01 result.tar.gz
13:01:30 (3719): run_atlas exited; CPU time 66277.203539
13:01:30 (3719): called boinc_finish(0)

</stderr_txt>
]]>

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