Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:29:32 (13044): wrapper (7.7.26015): starting
15:29:32 (13044): wrapper: running run_atlas (--nthreads 12)
[2025-05-30 15:29:32] Arguments: --nthreads 12
[2025-05-30 15:29:32] Threads: 12
[2025-05-30 15:29:32] Checking for CVMFS
[2025-05-30 15:29:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 15:29:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 15:29:33] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 15:29:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 15:29:33] 2.11.2.0 3035 28857 88184 146610 1 1 13254870 20275201 1 130560 0 12253269 99.980 5298363 6568 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-30 15:29:33] CVMFS is ok
[2025-05-30 15:29:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-30 15:29:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-30 15:29:33] Further information can be found at the LHC@home message board.
[2025-05-30 15:29:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 15:29:33] Checking for apptainer binary...
[2025-05-30 15:29:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 15:29:33] Running /usr/bin/apptainer --version
[2025-05-30 15:29:33] apptainer version 1.3.2-1.el7
[2025-05-30 15:29:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 15:29:34] c-205-31.aglt2.org
[2025-05-30 15:29:34] apptainer works
[2025-05-30 15:29:34] Set ATHENA_PROC_NUMBER=12
[2025-05-30 15:29:34] Set ATHENA_CORE_NUMBER=12
[2025-05-30 15:29:34] Starting ATLAS job with PandaID=6666239379
[2025-05-30 15:29:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:46:03 (9146): wrapper (7.7.26015): starting
16:46:03 (9146): wrapper: running run_atlas (--nthreads 12)
[2025-05-30 16:46:03] Arguments: --nthreads 12
[2025-05-30 16:46:03] Threads: 12
[2025-05-30 16:46:03] This job has been restarted, cleaning up previous attempt
[2025-05-30 16:46:03] Checking for CVMFS
[2025-05-30 16:46:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 16:46:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 16:46:03] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 16:46:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 16:46:03] 2.11.2.0 3035 28933 86360 146611 1 38 13281344 20275200 1 130560 0 12326935 99.980 5299745 6570 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-30 16:46:03] CVMFS is ok
[2025-05-30 16:46:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-30 16:46:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-30 16:46:03] Further information can be found at the LHC@home message board.
[2025-05-30 16:46:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 16:46:03] Checking for apptainer binary...
[2025-05-30 16:46:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 16:46:03] Running /usr/bin/apptainer --version
[2025-05-30 16:46:03] apptainer version 1.3.2-1.el7
[2025-05-30 16:46:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 16:46:05] c-205-31.aglt2.org
[2025-05-30 16:46:05] apptainer works
[2025-05-30 16:46:05] Set ATHENA_PROC_NUMBER=12
[2025-05-30 16:46:05] Set ATHENA_CORE_NUMBER=12
[2025-05-30 16:46:05] Starting ATLAS job with PandaID=6666239379
[2025-05-30 16:46:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 19:15:48]  *** The last 200 lines of the pilot log: ***
[2025-05-30 19:15:48] 2025-05-30 23:15:35,730 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6666239379/memory_monitor_summary.json (trf name=prmon)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,731 | INFO     | extracted standard info from prmon json
[2025-05-30 19:15:48] 2025-05-30 23:15:35,731 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 19:15:48] 2025-05-30 23:15:35,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 19:15:48] 2025-05-30 23:15:35,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 19:15:48] 2025-05-30 23:15:35,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 19:15:48] 2025-05-30 23:15:35,736 | INFO     | fitting pss+swap vs Time
[2025-05-30 19:15:48] 2025-05-30 23:15:35,736 | INFO     | sum of square deviations: 984940406.9387786
[2025-05-30 19:15:48] 2025-05-30 23:15:35,737 | INFO     | sum of deviations: -3289379451.1020403
[2025-05-30 19:15:48] 2025-05-30 23:15:35,737 | INFO     | mean x: 1748642461.0204082
[2025-05-30 19:15:48] 2025-05-30 23:15:35,737 | INFO     | mean y: 2659390.700680272
[2025-05-30 19:15:48] 2025-05-30 23:15:35,737 | INFO     | -- intersect: 5842554411.844389
[2025-05-30 19:15:48] 2025-05-30 23:15:35,737 | INFO     | intersect: 5842554411.844389
[2025-05-30 19:15:48] 2025-05-30 23:15:35,738 | INFO     | chi2: 2.4821760709326415
[2025-05-30 19:15:48] 2025-05-30 23:15:35,738 | INFO     | sum of square deviations: 887813919.4366174
[2025-05-30 19:15:48] 2025-05-30 23:15:35,738 | INFO     | sum of deviations: 7200915185.380284
[2025-05-30 19:15:48] 2025-05-30 23:15:35,739 | INFO     | mean x: 1748642308.5211267
[2025-05-30 19:15:48] 2025-05-30 23:15:35,739 | INFO     | mean y: 2675408.8732394367
[2025-05-30 19:15:48] 2025-05-30 23:15:35,739 | INFO     | -- intersect: -14180279687.413883
[2025-05-30 19:15:48] 2025-05-30 23:15:35,739 | INFO     | intersect: -14180279687.413883
[2025-05-30 19:15:48] 2025-05-30 23:15:35,739 | INFO     | chi2: 1.7053706058811935
[2025-05-30 19:15:48] 2025-05-30 23:15:35,739 | INFO     | current chi2=1.7053706058811935 (change=31.295340977144086 %)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,740 | INFO     | sum of square deviations: 797292206.9343061
[2025-05-30 19:15:48] 2025-05-30 23:15:35,740 | INFO     | sum of deviations: 7102428926.218987
[2025-05-30 19:15:48] 2025-05-30 23:15:35,740 | INFO     | mean x: 1748642156.0218978
[2025-05-30 19:15:48] 2025-05-30 23:15:35,740 | INFO     | mean y: 2675242.9270072994
[2025-05-30 19:15:48] 2025-05-30 23:15:35,741 | INFO     | -- intersect: -15574557950.27187
[2025-05-30 19:15:48] 2025-05-30 23:15:35,741 | INFO     | intersect: -15574557950.27187
[2025-05-30 19:15:48] 2025-05-30 23:15:35,741 | INFO     | chi2: 1.7073187983779359
[2025-05-30 19:15:48] 2025-05-30 23:15:35,741 | INFO     | current chi2=1.7073187983779359 (change=-0.11423865815581599 %)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,741 | INFO     | right removable region: 136
[2025-05-30 19:15:48] 2025-05-30 23:15:35,741 | INFO     | sum of square deviations: 887812089.4366174
[2025-05-30 19:15:48] 2025-05-30 23:15:35,742 | INFO     | sum of deviations: -28661433292.760567
[2025-05-30 19:15:48] 2025-05-30 23:15:35,742 | INFO     | mean x: 1748642613.5211267
[2025-05-30 19:15:48] 2025-05-30 23:15:35,742 | INFO     | mean y: 2698672.2535211267
[2025-05-30 19:15:48] 2025-05-30 23:15:35,742 | INFO     | -- intersect: 56454513438.7299
[2025-05-30 19:15:48] 2025-05-30 23:15:35,742 | INFO     | intersect: 56454513438.7299
[2025-05-30 19:15:48] 2025-05-30 23:15:35,743 | INFO     | chi2: 0.9367354681900047
[2025-05-30 19:15:48] 2025-05-30 23:15:35,743 | INFO     | current chi2=0.9367354681900047 (change=62.26152209105618 %)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,743 | INFO     | sum of square deviations: 797288546.9343061
[2025-05-30 19:15:48] 2025-05-30 23:15:35,744 | INFO     | sum of deviations: -27020393337.547447
[2025-05-30 19:15:48] 2025-05-30 23:15:35,744 | INFO     | mean x: 1748642766.0218978
[2025-05-30 19:15:48] 2025-05-30 23:15:35,744 | INFO     | mean y: 2695798.182481752
[2025-05-30 19:15:48] 2025-05-30 23:15:35,744 | INFO     | -- intersect: 59264823074.99859
[2025-05-30 19:15:48] 2025-05-30 23:15:35,744 | INFO     | intersect: 59264823074.99859
[2025-05-30 19:15:48] 2025-05-30 23:15:35,744 | INFO     | chi2: 0.9160192519379471
[2025-05-30 19:15:48] 2025-05-30 23:15:35,745 | INFO     | current chi2=0.9160192519379471 (change=2.2115332402312373 %)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,745 | INFO     | left removable region: 20
[2025-05-30 19:15:48] 2025-05-30 23:15:35,745 | INFO     | sum of square deviations: 483969366.92241406
[2025-05-30 19:15:48] 2025-05-30 23:15:35,745 | INFO     | sum of deviations: -6930922131.379307
[2025-05-30 19:15:48] 2025-05-30 23:15:35,745 | INFO     | mean x: 1748642735.525862
[2025-05-30 19:15:48] 2025-05-30 23:15:35,746 | INFO     | mean y: 2696498.793103448
[2025-05-30 19:15:48] 2025-05-30 23:15:35,746 | INFO     | -- intersect: 25044997652.276604
[2025-05-30 19:15:48] 2025-05-30 23:15:35,746 | INFO     | intersect: 25044997652.276604
[2025-05-30 19:15:48] 2025-05-30 23:15:35,746 | INFO     | chi2: 0.0658122500087538
[2025-05-30 19:15:48] 2025-05-30 23:15:35,746 | INFO     | -- intersect: 25044997652.276604
[2025-05-30 19:15:48] 2025-05-30 23:15:35,746 | INFO     | current memory leak: -14.32 B/s (using 116 data points, chi2=0.07)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | ..............................
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . Timing measurements:
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . get job = 0 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . initial setup = 1 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . payload setup = 10 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . stage-in = 0 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . payload execution = 8920 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . stage-out = 2 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,747 | INFO     | . log creation = 0 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,748 | INFO     | ..............................
[2025-05-30 19:15:48] 2025-05-30 23:15:35,832 | INFO     | 
[2025-05-30 19:15:48] 2025-05-30 23:15:35,833 | INFO     | job summary report
[2025-05-30 19:15:48] 2025-05-30 23:15:35,833 | INFO     | --------------------------------------------------
[2025-05-30 19:15:48] 2025-05-30 23:15:35,833 | INFO     | PanDA job id: 6666239379
[2025-05-30 19:15:48] 2025-05-30 23:15:35,833 | INFO     | task id: 44871837
[2025-05-30 19:15:48] 2025-05-30 23:15:35,833 | INFO     | errors: (none)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | pilot state: finished 
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | transexitcode: 0
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | exeerrorcode: 0
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | exeerrordiag: 
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | exitcode: 0
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | exitmsg: OK
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | cpuconsumptiontime: 62661 s
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | nevents: 400
[2025-05-30 19:15:48] 2025-05-30 23:15:35,834 | INFO     | neventsw: 0
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | pid: 20061
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | pgrp: 20061
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | corecount: 12
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | event service: False
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | sizes: {0: 2404406, 1: 2405262, 6: 2405468, 12: 2405496, 8934: 2433295, 8937: 2442236, 8938: 2442420, 8943: 2442590}
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | --------------------------------------------------
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | 
[2025-05-30 19:15:48] 2025-05-30 23:15:35,835 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-30 19:15:48] 2025-05-30 23:15:35,858 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,859 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,859 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,859 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,859 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,859 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,859 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,861 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 19:15:48] 2025-05-30 23:15:35,862 | INFO     | job 6666239379 has completed (purged errors)
[2025-05-30 19:15:48] 2025-05-30 23:15:35,862 | INFO     | overall cleanup function is called
[2025-05-30 19:15:48] 2025-05-30 23:15:36,870 | INFO     | --- collectZombieJob: --- 10, [20061]
[2025-05-30 19:15:48] 2025-05-30 23:15:36,871 | INFO     | zombie collector waiting for pid 20061
[2025-05-30 19:15:48] 2025-05-30 23:15:36,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 19:15:48] 2025-05-30 23:15:36,871 | INFO     | collected zombie processes
[2025-05-30 19:15:48] 2025-05-30 23:15:36,871 | INFO     | will attempt to kill all subprocesses of pid=20061
[2025-05-30 19:15:48] 2025-05-30 23:15:36,960 | INFO     | process IDs to be killed: [20061] (in reverse order)
[2025-05-30 19:15:48] 2025-05-30 23:15:37,062 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 19:15:48] 2025-05-30 23:15:37,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 19:15:48] 2025-05-30 23:15:37,066 | INFO     | did not find any defunct processes belonging to 20061
[2025-05-30 19:15:48] 2025-05-30 23:15:37,068 | INFO     | did not find any defunct processes belonging to 20061
[2025-05-30 19:15:48] 2025-05-30 23:15:37,068 | INFO     | ready for new job
[2025-05-30 19:15:48] 2025-05-30 23:15:37,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 19:15:48] 2025-05-30 23:15:37,069 | INFO     | **************************************
[2025-05-30 19:15:48] 2025-05-30 23:15:37,069 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 19:15:48] 2025-05-30 23:15:37,069 | INFO     | **************************************
[2025-05-30 19:15:48] 2025-05-30 23:15:37,070 | INFO     | 
[2025-05-30 19:15:48] 2025-05-30 23:15:37,070 | INFO     | architecture information:
[2025-05-30 19:15:48] 2025-05-30 23:15:37,071 | INFO     | executing command: cat /etc/os-release
[2025-05-30 19:15:48] 2025-05-30 23:15:37,087 | INFO     | cat /etc/os-release:
[2025-05-30 19:15:48] NAME="CentOS Linux"
[2025-05-30 19:15:48] VERSION="7 (Core)"
[2025-05-30 19:15:48] ID="centos"
[2025-05-30 19:15:48] ID_LIKE="rhel fedora"
[2025-05-30 19:15:48] VERSION_ID="7"
[2025-05-30 19:15:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 19:15:48] ANSI_COLOR="0;31"
[2025-05-30 19:15:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 19:15:48] HOME_URL="https://www.centos.org/"
[2025-05-30 19:15:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 19:15:48] 
[2025-05-30 19:15:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 19:15:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 19:15:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 19:15:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 19:15:48] 
[2025-05-30 19:15:48] 2025-05-30 23:15:37,088 | INFO     | **************************************
[2025-05-30 19:15:48] 2025-05-30 23:15:37,591 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-30 19:15:48] 2025-05-30 23:15:37,609 | INFO     | sufficient remaining disk space (29389488128 B)
[2025-05-30 19:15:48] 2025-05-30 23:15:37,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 19:15:48] 2025-05-30 23:15:37,609 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 19:15:48] 2025-05-30 23:15:37,609 | INFO     | update_server=False
[2025-05-30 19:15:48] 2025-05-30 23:15:37,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 19:15:48] 2025-05-30 23:15:37,610 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 19:15:48] 2025-05-30 23:15:37,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 19:15:48] 2025-05-30 23:15:37,610 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 19:15:48] 2025-05-30 23:15:37,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 19:15:48] 2025-05-30 23:15:37,611 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 19:15:48] 2025-05-30 23:15:37,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 19:15:48] 2025-05-30 23:15:37,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 19:15:48] 2025-05-30 23:15:38,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 19:15:48] 2025-05-30 23:15:38,321 | INFO     | aborting loop
[2025-05-30 19:15:48] 2025-05-30 23:15:38,403 | INFO     | all job control threads have been joined
[2025-05-30 19:15:48] 2025-05-30 23:15:38,615 | INFO     | [job] retrieve thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:38,616 | INFO     | [job] queue monitor thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:38,695 | INFO     | all data control threads have been joined
[2025-05-30 19:15:48] 2025-05-30 23:15:38,968 | INFO     | [job] validate thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:38,990 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:38,994 | INFO     | all payload control threads have been joined
[2025-05-30 19:15:48] 2025-05-30 23:15:39,326 | INFO     | [job] job monitor thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,381 | INFO     | [data] copytool_in thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,382 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,408 | INFO     | [job] control thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,478 | INFO     | [payload] validate_post thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,615 | INFO     | [data] copytool_out thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,641 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,700 | INFO     | [data] control thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:39,999 | INFO     | [payload] control thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:40,043 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:40,174 | INFO     | [payload] failed_post thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:41,617 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 19:15:48] 2025-05-30 23:15:43,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763687880512)>', '<ExcThread(monitor, started 139763101185792)>']
[2025-05-30 19:15:48] 2025-05-30 23:15:43,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 19:15:48] 2025-05-30 23:15:43,641 | INFO     | [monitor] control thread has ended
[2025-05-30 19:15:48] 2025-05-30 23:15:48,071 | INFO     | all workflow threads have been joined
[2025-05-30 19:15:48] 2025-05-30 23:15:48,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 19:15:48] 2025-05-30 23:15:48,072 | INFO     | traces error code: 0
[2025-05-30 19:15:48] 2025-05-30 23:15:48,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 19:15:48] 2025-05-30 23:15:48,160 [wrapper] ==== pilot stdout END ====
[2025-05-30 19:15:48] 2025-05-30 23:15:48,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 19:15:48] 2025-05-30 23:15:48,168 [wrapper] pilotpid: 12758
[2025-05-30 19:15:48] 2025-05-30 23:15:48,172 [wrapper] Pilot exit status: 0
[2025-05-30 19:15:48] 2025-05-30 23:15:48,188 [wrapper] pandaids: 6666239379 6666239379
[2025-05-30 19:15:48] 2025-05-30 23:15:48,228 [wrapper] cleanup supervisor_pilot  1709 12759
[2025-05-30 19:15:48] 2025-05-30 23:15:48,233 [wrapper] Test setup, not cleaning
[2025-05-30 19:15:48] 2025-05-30 23:15:48,237 [wrapper] apfmon messages muted
[2025-05-30 19:15:48] 2025-05-30 23:15:48,241 [wrapper] ==== wrapper stdout END ====
[2025-05-30 19:15:48] 2025-05-30 23:15:48,245 [wrapper] ==== wrapper stderr END ====
[2025-05-30 19:15:48]  *** Error codes and diagnostics ***
[2025-05-30 19:15:48]     "exeErrorCode": 0,
[2025-05-30 19:15:48]     "exeErrorDiag": "",
[2025-05-30 19:15:48]     "pilotErrorCode": 0,
[2025-05-30 19:15:48]     "pilotErrorDiag": "",
[2025-05-30 19:15:48]  *** Listing of results directory ***
[2025-05-30 19:15:48] total 627968
[2025-05-30 19:15:48] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas    495897 May 26 15:12 pilot3.tar.gz
[2025-05-30 19:15:48] -rwx------ 1 boincer umatlas     37140 May 26 15:34 runpilot2-wrapper.sh
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas      5111 May 26 15:34 queuedata.json
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas       100 May 30 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 19:15:48] -rwxr-xr-x 1 boincer umatlas      7986 May 30 15:29 run_atlas
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas       105 May 30 15:29 job.xml
[2025-05-30 19:15:48] -rw-r--r-- 3 boincer umatlas 221828523 May 30 15:29 EVNT.44871834._002217.pool.root.1
[2025-05-30 19:15:48] -rw-r--r-- 3 boincer umatlas 221828523 May 30 15:29 ATLAS.root_0
[2025-05-30 19:15:48] -rw-r--r-- 2 boincer umatlas     15093 May 30 15:29 start_atlas.sh
[2025-05-30 19:15:48] drwxrwx--x 2 boincer umatlas      4096 May 30 15:29 shared
[2025-05-30 19:15:48] -rw-r--r-- 2 boincer umatlas    508873 May 30 15:29 input.tar.gz
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas         0 May 30 15:29 boinc_lockfile
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas      2559 May 30 16:46 pandaJob.out
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas    987388 May 30 16:46 agis_schedconf.cvmfs.json
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas      5868 May 30 19:11 init_data.xml
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas 193120740 May 30 19:14 HITS.44871837._055917.pool.root.1
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas       531 May 30 19:15 boinc_task_state.xml
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas      1060 May 30 19:15 memory_monitor_summary.json
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas   1603667 May 30 19:15 agis_ddmendpoints.agis.ALL.json
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas    417421 May 30 19:15 log.44871837._055917.job.log.tgz.1
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas        96 May 30 19:15 pilot_heartbeat.json
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas      7761 May 30 19:15 heartbeat.json
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas      8192 May 30 19:15 boinc_mmap_file
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas        29 May 30 19:15 wrapper_checkpoint.txt
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas      4476 May 30 19:15 pilotlog.txt
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas    796274 May 30 19:15 log.44871837._055917.job.log.1
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas       357 May 30 19:15 output.list
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas       620 May 30 19:15 runtime_log
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas   1228800 May 30 19:15 result.tar.gz
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas      8746 May 30 19:15 runtime_log.err
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas       785 May 30 19:15 jAlMDmzlsd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmjeQKDmvDavTn.diag
[2025-05-30 19:15:48] -rw-r--r-- 1 boincer umatlas     23068 May 30 19:15 stderr.txt
[2025-05-30 19:15:48] HITS file was successfully produced:
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas 193120740 May 30 19:14 shared/HITS.pool.root.1
[2025-05-30 19:15:48]  *** Contents of shared directory: ***
[2025-05-30 19:15:48] total 406948
[2025-05-30 19:15:48] -rw-r--r-- 3 boincer umatlas 221828523 May 30 15:29 ATLAS.root_0
[2025-05-30 19:15:48] -rw-r--r-- 2 boincer umatlas     15093 May 30 15:29 start_atlas.sh
[2025-05-30 19:15:48] -rw-r--r-- 2 boincer umatlas    508873 May 30 15:29 input.tar.gz
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas 193120740 May 30 19:14 HITS.pool.root.1
[2025-05-30 19:15:48] -rw------- 1 boincer umatlas   1228800 May 30 19:15 result.tar.gz
19:15:49 (9146): run_atlas exited; CPU time 62596.763624
19:15:49 (9146): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN