Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-31 10:31:06 (9612): Detected: vboxwrapper 26206
2025-05-31 10:31:06 (9612): Detected: BOINC client v7.16.20
2025-05-31 10:31:07 (9612): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-05-31 10:31:07 (9612): Successfully copied 'init_data.xml' to the shared directory.
2025-05-31 10:31:07 (9612): Create VM. (boinc_69b48f8382653fbb, slot#1)
2025-05-31 10:31:08 (9612): Setting Memory Size for VM. (4800MB)
2025-05-31 10:31:08 (9612): Setting CPU Count for VM. (8)
2025-05-31 10:31:08 (9612): Setting Chipset Options for VM.
2025-05-31 10:31:09 (9612): Setting Graphics Controller Options for VM.
2025-05-31 10:31:09 (9612): Setting Boot Options for VM.
2025-05-31 10:31:09 (9612): Setting Network Configuration for NAT.
2025-05-31 10:31:10 (9612): Enabling VM Network Access.
2025-05-31 10:31:10 (9612): Disabling USB Support for VM.
2025-05-31 10:31:10 (9612): Disabling COM Port Support for VM.
2025-05-31 10:31:10 (9612): Disabling LPT Port Support for VM.
2025-05-31 10:31:11 (9612): Disabling Audio Support for VM.
2025-05-31 10:31:11 (9612): Disabling Clipboard Support for VM.
2025-05-31 10:31:11 (9612): Disabling Drag and Drop Support for VM.
2025-05-31 10:31:11 (9612): Adding storage controller(s) to VM.
2025-05-31 10:31:12 (9612): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-31 10:31:12 (9612): Adding VirtualBox Guest Additions to VM.
2025-05-31 10:31:12 (9612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-31 10:31:13 (9612): forwarding host port 52640 to guest port 80
2025-05-31 10:31:13 (9612): Enabling remote desktop for VM.
2025-05-31 10:31:13 (9612): Required extension pack not installed, remote desktop not enabled.
2025-05-31 10:31:13 (9612): Enabling shared directory for VM.
2025-05-31 10:31:14 (9612): Starting VM using VBoxManage interface. (boinc_69b48f8382653fbb, slot#1)
2025-05-31 10:31:17 (9612): Successfully started VM. (PID = '5912')
2025-05-31 10:31:17 (9612): Reporting VM Process ID to BOINC.
2025-05-31 10:31:17 (9612): Guest Log: BIOS: VirtualBox 6.1.50
2025-05-31 10:31:17 (9612): Guest Log: CPUID EDX: 0x178bfbff
2025-05-31 10:31:17 (9612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-31 10:31:17 (9612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-31 10:31:17 (9612): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-31 10:31:17 (9612): Detected: Web Application Enabled (http://localhost:52640)
2025-05-31 10:31:17 (9612): Preference change detected
2025-05-31 10:31:17 (9612): Setting CPU throttle for VM. (100%)
2025-05-31 10:31:17 (9612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-31 10:31:19 (9612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-31 10:31:19 (9612): Guest Log: BIOS: Booting from Hard Disk...
2025-05-31 10:31:22 (9612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-31 10:31:22 (9612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-31 10:31:22 (9612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-31 10:31:27 (9612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-31 10:31:27 (9612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-31 10:31:31 (9612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000080 main     Log opened 2025-05-31T10:31:30.309140000Z
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000142 main     OS Product: Linux
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000157 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000170 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000182 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000182 main     Process ID: 1367
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000183 main     Package type: LINUX_64BITS_GENERIC
2025-05-31 10:31:31 (9612): Guest Log: 00:00:00.000792 main     5.2.32 r132073 started. Verbose level = 0
2025-05-31 10:31:31 (9612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-31 10:31:31 (9612): Guest Log: [INFO] Mounting shared directory
2025-05-31 10:31:31 (9612): Guest Log: [INFO] Checking for init_data.xml
2025-05-31 10:31:40 (9612): Guest Log: 00:00:10.056154 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 226 176 000ns (GuestNow=1 748 680 301 084 978 000 ns GuestLast=1 748 687 490 311 154 000 ns fSetTimeLastLoop=true )
2025-05-31 10:32:23 (9612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-31 10:32:23 (9612): Guest Log: [INFO] Detected branch: prod
2025-05-31 10:32:23 (9612): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-31 10:32:23 (9612): Guest Log: Copying input files
2025-05-31 10:32:24 (9612): Guest Log: Copied input files into RunAtlas.
2025-05-31 10:32:24 (9612): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-31 10:32:24 (9612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-31 10:32:24 (9612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-31 10:32:24 (9612): Guest Log: Further information can be found at the LHC@home message board.
2025-05-31 10:33:20 (9612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-31 10:33:21 (9612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-31 10:33:21 (9612): Guest Log: 2.6.3.0 1668 1 32076 146628 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-31 10:33:21 (9612): Guest Log: copied the webapp to /var/www
2025-05-31 10:33:21 (9612): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-31 10:33:21 (9612): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-31 10:33:21 (9612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-31 10:33:21 (9612): Guest Log:  *** Starting ATLAS job. (PandaID=6666763490 taskID=44871837) ***
2025-05-31 11:59:41 (9612): Guest Log:  *** Job finished ***
2025-05-31 11:59:41 (9612): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:06,749 | INFO     | [payload] control thread has finished
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:07,087 | INFO     | [payload] validate_pre thread has finished
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:08,665 | INFO     | [data] queue_monitor thread has finished
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:09,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365358708544)>', '<ExcThread(monitor, started 140363960416000)>']
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:10,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:10,760 | INFO     | [monitor] control thread has ended
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,788 | INFO     | all workflow threads have been joined
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,788 | INFO     | end of generic workflow (traces error code: 0)
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,788 | INFO     | traces error code: 0
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,946 [wrapper] ==== pilot stdout END ====
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,950 [wrapper] ==== wrapper stdout RESUME ====
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,953 [wrapper] pilotpid: 6035
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:15,956 [wrapper] Pilot exit status: 0
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:16,029 [wrapper] pandaids: 6666763490
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:16,055 [wrapper] cleanup supervisor_pilot  1248 6036
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:16,059 [wrapper] Test setup, not cleaning
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:16,063 [wrapper] apfmon messages muted
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:16,067 [wrapper] ==== wrapper stdout END ====
2025-05-31 11:59:41 (9612): Guest Log: 2025-05-31 10:08:16,071 [wrapper] ==== wrapper stderr END ====
2025-05-31 11:59:41 (9612): Guest Log:  *** Error codes and diagnostics ***
2025-05-31 11:59:41 (9612): Guest Log:     "exeErrorCode": 0,
2025-05-31 11:59:41 (9612): Guest Log:     "exeErrorDiag": "",
2025-05-31 11:59:41 (9612): Guest Log:     "pilotErrorCode": 0,
2025-05-31 11:59:41 (9612): Guest Log:     "pilotErrorDiag": "",
2025-05-31 11:59:41 (9612): Guest Log:  *** Listing of results directory ***
2025-05-31 11:59:41 (9612): Guest Log: total 196748
2025-05-31 11:59:41 (9612): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 04:09 pilot3.tar.gz
2025-05-31 11:59:41 (9612): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 04:37 queuedata.json
2025-05-31 11:59:41 (9612): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 04:40 runpilot2-wrapper.sh
2025-05-31 11:59:41 (9612): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 31 08:32 start_atlas.sh
2025-05-31 11:59:41 (9612): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 May 31 08:32 input.tar.gz
2025-05-31 11:59:41 (9612): Guest Log: -rwxr-xr-x. 1 atlas atlas      8790 May 31 08:32 init_data.xml
2025-05-31 11:59:41 (9612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 31 08:32 EVNT.44871834._002458.pool.root.1 -> /data/./ATLAS.root_0
2025-05-31 11:59:41 (9612): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May 31 08:33 pandaJob.out
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas    987388 May 31 08:35 agis_schedconf.cvmfs.json
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas   1603667 May 31 08:35 agis_ddmendpoints.agis.ALL.json
2025-05-31 11:59:41 (9612): Guest Log: drwx------. 4 atlas atlas      4096 May 31 08:35 pilot3
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas        95 May 31 10:07 pilot_heartbeat.json
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas 196081189 May 31 10:07 HITS.44871837._062309.pool.root.1
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas      1027 May 31 10:07 memory_monitor_summary.json
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas    313491 May 31 10:07 log.44871837._062309.job.log.tgz.1
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas      7709 May 31 10:08 heartbeat.json
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas      4536 May 31 10:08 pilotlog.txt
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas    492509 May 31 10:08 log.44871837._062309.job.log.1
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas       357 May 31 10:08 output.list
2025-05-31 11:59:41 (9612): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 31 10:08 runtime_log
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas    829440 May 31 10:08 result.tar.gz
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas       652 May 31 10:08 wCvNDmxH1d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlKRKDmoqgxZm.diag
2025-05-31 11:59:41 (9612): Guest Log: -rw-r--r--. 1 atlas atlas      8589 May 31 10:08 runtime_log.err
2025-05-31 11:59:41 (9612): Guest Log: Looking for outputfile HITS.44871837._062309.pool.root.1
2025-05-31 11:59:41 (9612): Guest Log: HITS file was successfully produced
2025-05-31 11:59:41 (9612): Guest Log: -rw-------. 1 atlas atlas 196081189 May 31 10:07 /home/atlas/RunAtlas/HITS.44871837._062309.pool.root.1
2025-05-31 11:59:41 (9612): Guest Log: Successfully finished the ATLAS job!
2025-05-31 11:59:41 (9612): Guest Log: Copying the results back to the shared directory!
2025-05-31 11:59:41 (9612): Guest Log:  *** Contents of shared directory: ***
2025-05-31 11:59:41 (9612): Guest Log: total 412520
2025-05-31 11:59:41 (9612): Guest Log: -rwxrwxrwx. 1 root root 224964029 May 31 08:31 ATLAS.root_0
2025-05-31 11:59:41 (9612): Guest Log: -rwxrwxrwx. 1 root root 196081189 May 31 09:59 HITS.pool.root.1
2025-05-31 11:59:41 (9612): Guest Log: -rwxrwxrwx. 1 root root      8790 May 31 08:31 init_data.xml
2025-05-31 11:59:41 (9612): Guest Log: -rwxrwxrwx. 1 root root    508882 May 30 14:22 input.tar.gz
2025-05-31 11:59:41 (9612): Guest Log: -rwxrwxrwx. 1 root root    829440 May 31 09:59 result.tar.gz
2025-05-31 11:59:41 (9612): Guest Log: -rwxrwxrwx. 1 root root     15093 May 30 14:22 start_atlas.sh
2025-05-31 11:59:41 (9612): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-31 11:59:41 (9612): VM Completion File Detected.
2025-05-31 11:59:41 (9612): Powering off VM.
2025-05-31 11:59:42 (9612): Successfully stopped VM.
2025-05-31 11:59:42 (9612): Deregistering VM. (boinc_69b48f8382653fbb, slot#1)
2025-05-31 11:59:42 (9612): Removing network bandwidth throttle group from VM.
2025-05-31 11:59:42 (9612): Removing VM from VirtualBox.
11:59:48 (9612): called boinc_finish(0)

</stderr_txt>
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