Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:04:26 (39928): wrapper (7.7.26015): starting
08:04:26 (39928): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 08:04:26] Arguments: --nthreads 8
[2025-05-30 08:04:26] Threads: 8
[2025-05-30 08:04:26] Checking for CVMFS
[2025-05-30 08:04:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 08:04:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 08:04:26] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 08:04:26] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/patatrack.cern.ch: Transport endpoint is not connected
[2025-05-30 08:04:26] 
[2025-05-30 08:04:26] CVMFS is ok
[2025-05-30 08:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-30 08:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-30 08:04:26] Further information can be found at the LHC@home message board.
[2025-05-30 08:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 08:04:26] Checking for apptainer binary...
[2025-05-30 08:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 08:04:26] Running /usr/bin/apptainer --version
[2025-05-30 08:04:26] apptainer version 1.3.2-1.el7
[2025-05-30 08:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 08:04:30] c-211-10.aglt2.org
[2025-05-30 08:04:30] apptainer works
[2025-05-30 08:04:30] Set ATHENA_PROC_NUMBER=8
[2025-05-30 08:04:30] Set ATHENA_CORE_NUMBER=8
[2025-05-30 08:04:30] Starting ATLAS job with PandaID=6673535992
[2025-05-30 08:04:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 17:19:31]  *** The last 200 lines of the pilot log: ***
[2025-05-30 17:19:31] 2025-05-30 21:19:06,207 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 17:19:31] 2025-05-30 21:19:06,208 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 17:19:31] 2025-05-30 21:19:06,208 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 17:19:31] 2025-05-30 21:19:06,208 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 17:19:31] 2025-05-30 21:19:06,226 | INFO     | fitting pss+swap vs Time
[2025-05-30 17:19:31] 2025-05-30 21:19:06,228 | INFO     | sum of square deviations: 49921157335.08646
[2025-05-30 17:19:31] 2025-05-30 21:19:06,239 | INFO     | sum of deviations: -30651653769.950302
[2025-05-30 17:19:31] 2025-05-30 21:19:06,239 | INFO     | mean x: 1748623294.1599264
[2025-05-30 17:19:31] 2025-05-30 21:19:06,239 | INFO     | mean y: 2473861.2408088236
[2025-05-30 17:19:31] 2025-05-30 21:19:06,240 | INFO     | -- intersect: 1076130776.4219239
[2025-05-30 17:19:31] 2025-05-30 21:19:06,240 | INFO     | intersect: 1076130776.4219239
[2025-05-30 17:19:31] 2025-05-30 21:19:06,241 | INFO     | chi2: 5.018607979832417
[2025-05-30 17:19:31] 2025-05-30 21:19:06,242 | INFO     | sum of square deviations: 48557375758.218994
[2025-05-30 17:19:31] 2025-05-30 21:19:06,253 | INFO     | sum of deviations: 117581527555.42111
[2025-05-30 17:19:31] 2025-05-30 21:19:06,253 | INFO     | mean x: 1748623141.664193
[2025-05-30 17:19:31] 2025-05-30 21:19:06,253 | INFO     | mean y: 2490406.5658627087
[2025-05-30 17:19:31] 2025-05-30 21:19:06,253 | INFO     | -- intersect: -4231794846.8095484
[2025-05-30 17:19:31] 2025-05-30 21:19:06,254 | INFO     | intersect: -4231794846.8095484
[2025-05-30 17:19:31] 2025-05-30 21:19:06,255 | INFO     | chi2: 1.6882599788160415
[2025-05-30 17:19:31] 2025-05-30 21:19:06,255 | INFO     | current chi2=1.6882599788160415 (change=66.35999493085698 %)
[2025-05-30 17:19:31] 2025-05-30 21:19:06,256 | INFO     | sum of square deviations: 47218598051.49844
[2025-05-30 17:19:31] 2025-05-30 21:19:06,266 | INFO     | sum of deviations: 115714370368.87648
[2025-05-30 17:19:31] 2025-05-30 21:19:06,266 | INFO     | mean x: 1748622989.164794
[2025-05-30 17:19:31] 2025-05-30 21:19:06,266 | INFO     | mean y: 2490193.8764044945
[2025-05-30 17:19:31] 2025-05-30 21:19:06,267 | INFO     | -- intersect: -4282702856.1812468
[2025-05-30 17:19:31] 2025-05-30 21:19:06,267 | INFO     | intersect: -4282702856.1812468
[2025-05-30 17:19:31] 2025-05-30 21:19:06,268 | INFO     | chi2: 1.6884349693288616
[2025-05-30 17:19:31] 2025-05-30 21:19:06,268 | INFO     | current chi2=1.6884349693288616 (change=-0.010365140145229566 %)
[2025-05-30 17:19:31] 2025-05-30 21:19:06,268 | INFO     | right removable region: 533
[2025-05-30 17:19:31] 2025-05-30 21:19:06,269 | INFO     | sum of square deviations: 48557189707.88872
[2025-05-30 17:19:31] 2025-05-30 21:19:06,280 | INFO     | sum of deviations: -128728397989.15953
[2025-05-30 17:19:31] 2025-05-30 21:19:06,281 | INFO     | mean x: 1748623446.6660483
[2025-05-30 17:19:31] 2025-05-30 21:19:06,281 | INFO     | mean y: 2484790.521335807
[2025-05-30 17:19:31] 2025-05-30 21:19:06,281 | INFO     | -- intersect: 4638203956.51403
[2025-05-30 17:19:31] 2025-05-30 21:19:06,281 | INFO     | intersect: 4638203956.51403
[2025-05-30 17:19:31] 2025-05-30 21:19:06,282 | INFO     | chi2: 3.3878539835753534
[2025-05-30 17:19:31] 2025-05-30 21:19:06,283 | INFO     | current chi2=3.3878539835753534 (change=32.49414982820632 %)
[2025-05-30 17:19:31] 2025-05-30 21:19:06,284 | INFO     | sum of square deviations: 47218292318.14966
[2025-05-30 17:19:31] 2025-05-30 21:19:06,294 | INFO     | sum of deviations: -134824253938.13858
[2025-05-30 17:19:31] 2025-05-30 21:19:06,294 | INFO     | mean x: 1748623599.1722846
[2025-05-30 17:19:31] 2025-05-30 21:19:06,295 | INFO     | mean y: 2485483.990636704
[2025-05-30 17:19:31] 2025-05-30 21:19:06,295 | INFO     | -- intersect: 4995399471.403229
[2025-05-30 17:19:31] 2025-05-30 21:19:06,295 | INFO     | intersect: 4995399471.403229
[2025-05-30 17:19:31] 2025-05-30 21:19:06,296 | INFO     | chi2: 3.3819147464866224
[2025-05-30 17:19:31] 2025-05-30 21:19:06,296 | INFO     | current chi2=3.3819147464866224 (change=0.17530971280123078 %)
[2025-05-30 17:19:31] 2025-05-30 21:19:06,297 | INFO     | left removable region: 20
[2025-05-30 17:19:31] 2025-05-30 21:19:06,298 | INFO     | sum of square deviations: 41863795971.33732
[2025-05-30 17:19:31] 2025-05-30 21:19:06,310 | INFO     | sum of deviations: 6212885648.060431
[2025-05-30 17:19:31] 2025-05-30 21:19:06,310 | INFO     | mean x: 1748623568.6920078
[2025-05-30 17:19:31] 2025-05-30 21:19:06,310 | INFO     | mean y: 2502871.8927875245
[2025-05-30 17:19:31] 2025-05-30 21:19:06,310 | INFO     | -- intersect: -257005326.5807811
[2025-05-30 17:19:31] 2025-05-30 21:19:06,311 | INFO     | intersect: -257005326.5807811
[2025-05-30 17:19:31] 2025-05-30 21:19:06,312 | INFO     | chi2: 0.0036571171202169125
[2025-05-30 17:19:31] 2025-05-30 21:19:06,312 | INFO     | -- intersect: -257005326.5807811
[2025-05-30 17:19:31] 2025-05-30 21:19:06,313 | INFO     | current memory leak: 0.15 B/s (using 513 data points, chi2=0.00)
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | ..............................
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | . Timing measurements:
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | . get job = 0 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | . initial setup = 2 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | . payload setup = 14 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | . stage-in = 0 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,316 | INFO     | . payload execution = 33142 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,317 | INFO     | . stage-out = 8 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,317 | INFO     | . log creation = 2 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,317 | INFO     | ..............................
[2025-05-30 17:19:31] 2025-05-30 21:19:06,662 | INFO     | 
[2025-05-30 17:19:31] 2025-05-30 21:19:06,662 | INFO     | job summary report
[2025-05-30 17:19:31] 2025-05-30 21:19:06,662 | INFO     | --------------------------------------------------
[2025-05-30 17:19:31] 2025-05-30 21:19:06,662 | INFO     | PanDA job id: 6673535992
[2025-05-30 17:19:31] 2025-05-30 21:19:06,662 | INFO     | task id: 44871837
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | errors: (none)
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | pilot state: finished 
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | transexitcode: 0
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | exeerrorcode: 0
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | exeerrordiag: 
[2025-05-30 17:19:31] 2025-05-30 21:19:06,670 | INFO     | exitcode: 0
[2025-05-30 17:19:31] 2025-05-30 21:19:06,671 | INFO     | exitmsg: OK
[2025-05-30 17:19:31] 2025-05-30 21:19:06,671 | INFO     | cpuconsumptiontime: 78847 s
[2025-05-30 17:19:31] 2025-05-30 21:19:06,671 | INFO     | nevents: 400
[2025-05-30 17:19:31] 2025-05-30 21:19:06,671 | INFO     | neventsw: 0
[2025-05-30 17:19:31] 2025-05-30 21:19:06,675 | INFO     | pid: 4695
[2025-05-30 17:19:31] 2025-05-30 21:19:06,675 | INFO     | pgrp: 4695
[2025-05-30 17:19:31] 2025-05-30 21:19:06,675 | INFO     | corecount: 8
[2025-05-30 17:19:31] 2025-05-30 21:19:06,675 | INFO     | event service: False
[2025-05-30 17:19:31] 2025-05-30 21:19:06,675 | INFO     | sizes: {0: 2405012, 1: 2405211, 7: 2405417, 12: 2405445, 33161: 2443550, 33162: 2443549, 33173: 2452674, 33175: 2452730, 33239: 2452900}
[2025-05-30 17:19:31] 2025-05-30 21:19:06,676 | INFO     | --------------------------------------------------
[2025-05-30 17:19:31] 2025-05-30 21:19:06,676 | INFO     | 
[2025-05-30 17:19:31] 2025-05-30 21:19:06,676 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-30 17:19:31] 2025-05-30 21:19:07,157 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,158 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,158 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,158 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,166 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,167 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,167 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,167 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,167 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 17:19:31] 2025-05-30 21:19:07,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 17:19:31] 2025-05-30 21:19:07,174 | INFO     | job 6673535992 has completed (purged errors)
[2025-05-30 17:19:31] 2025-05-30 21:19:07,174 | INFO     | overall cleanup function is called
[2025-05-30 17:19:31] 2025-05-30 21:19:07,619 | INFO     | 33262s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-05-30 17:19:31] 2025-05-30 21:19:08,201 | INFO     | --- collectZombieJob: --- 10, [4695]
[2025-05-30 17:19:31] 2025-05-30 21:19:08,202 | INFO     | zombie collector waiting for pid 4695
[2025-05-30 17:19:31] 2025-05-30 21:19:08,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 17:19:31] 2025-05-30 21:19:08,202 | INFO     | collected zombie processes
[2025-05-30 17:19:31] 2025-05-30 21:19:08,202 | INFO     | will attempt to kill all subprocesses of pid=4695
[2025-05-30 17:19:31] 2025-05-30 21:19:11,316 | INFO     | process IDs to be killed: [4695] (in reverse order)
[2025-05-30 17:19:31] 2025-05-30 21:19:11,812 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 17:19:31] 2025-05-30 21:19:11,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 17:19:31] 2025-05-30 21:19:11,842 | INFO     | did not find any defunct processes belonging to 4695
[2025-05-30 17:19:31] 2025-05-30 21:19:11,946 | INFO     | did not find any defunct processes belonging to 4695
[2025-05-30 17:19:31] 2025-05-30 21:19:11,947 | INFO     | ready for new job
[2025-05-30 17:19:31] 2025-05-30 21:19:11,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 17:19:31] 2025-05-30 21:19:11,969 | INFO     | **************************************
[2025-05-30 17:19:31] 2025-05-30 21:19:11,970 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 17:19:31] 2025-05-30 21:19:11,970 | INFO     | **************************************
[2025-05-30 17:19:31] 2025-05-30 21:19:11,970 | INFO     | 
[2025-05-30 17:19:31] 2025-05-30 21:19:11,981 | INFO     | architecture information:
[2025-05-30 17:19:31] 2025-05-30 21:19:12,005 | INFO     | executing command: cat /etc/os-release
[2025-05-30 17:19:31] 2025-05-30 21:19:12,134 | INFO     | cat /etc/os-release:
[2025-05-30 17:19:31] NAME="CentOS Linux"
[2025-05-30 17:19:31] VERSION="7 (Core)"
[2025-05-30 17:19:31] ID="centos"
[2025-05-30 17:19:31] ID_LIKE="rhel fedora"
[2025-05-30 17:19:31] VERSION_ID="7"
[2025-05-30 17:19:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 17:19:31] ANSI_COLOR="0;31"
[2025-05-30 17:19:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 17:19:31] HOME_URL="https://www.centos.org/"
[2025-05-30 17:19:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 17:19:31] 
[2025-05-30 17:19:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 17:19:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 17:19:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 17:19:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 17:19:31] 
[2025-05-30 17:19:31] 2025-05-30 21:19:12,135 | INFO     | **************************************
[2025-05-30 17:19:31] 2025-05-30 21:19:12,638 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-30 17:19:31] 2025-05-30 21:19:12,992 | INFO     | sufficient remaining disk space (57157877760 B)
[2025-05-30 17:19:31] 2025-05-30 21:19:12,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 17:19:31] 2025-05-30 21:19:12,993 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 17:19:31] 2025-05-30 21:19:12,993 | INFO     | update_server=False
[2025-05-30 17:19:31] 2025-05-30 21:19:12,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 17:19:31] 2025-05-30 21:19:13,318 | INFO     | all data control threads have been joined
[2025-05-30 17:19:31] 2025-05-30 21:19:13,803 | INFO     | all job control threads have been joined
[2025-05-30 17:19:31] 2025-05-30 21:19:13,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 17:19:31] 2025-05-30 21:19:13,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 17:19:31] 2025-05-30 21:19:13,933 | INFO     | aborting loop
[2025-05-30 17:19:31] 2025-05-30 21:19:14,019 | INFO     | [job] retrieve thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:14,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:14,316 | INFO     | all payload control threads have been joined
[2025-05-30 17:19:31] 2025-05-30 21:19:14,415 | INFO     | [data] control thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:14,477 | INFO     | [payload] failed_post thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:14,810 | INFO     | [job] control thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:14,945 | INFO     | [job] job monitor thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,100 | INFO     | [payload] validate_post thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,333 | INFO     | [payload] control thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,338 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,359 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,368 | INFO     | [data] copytool_in thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,454 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,459 | INFO     | [job] validate thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:15,681 | INFO     | PID=43632 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-30 17:19:31] 2025-05-30 21:19:15,681 | INFO     | .. there are 22 such processes running
[2025-05-30 17:19:31] 2025-05-30 21:19:15,681 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 17:19:31] 2025-05-30 21:19:15,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 17:19:31] 2025-05-30 21:19:15,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 17:19:31] 2025-05-30 21:19:15,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 17:19:31] 2025-05-30 21:19:15,839 | INFO     | [data] copytool_out thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:16,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 17:19:31] 2025-05-30 21:19:16,816 | INFO     | [job] queue monitor thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:20,406 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 17:19:31] 2025-05-30 21:19:20,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704584173376)>', '<ExcThread(monitor, started 139703835666176)>']
[2025-05-30 17:19:31] 2025-05-30 21:19:21,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 17:19:31] 2025-05-30 21:19:21,717 | INFO     | [monitor] control thread has ended
[2025-05-30 17:19:31] 2025-05-30 21:19:25,825 | INFO     | all workflow threads have been joined
[2025-05-30 17:19:31] 2025-05-30 21:19:25,826 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 17:19:31] 2025-05-30 21:19:25,826 | INFO     | traces error code: 0
[2025-05-30 17:19:31] 2025-05-30 21:19:25,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 17:19:31] 2025-05-30 21:19:27,825 [wrapper] ==== pilot stdout END ====
[2025-05-30 17:19:31] 2025-05-30 21:19:27,865 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 17:19:31] 2025-05-30 21:19:27,899 [wrapper] pilotpid: 43632
[2025-05-30 17:19:31] 2025-05-30 21:19:27,938 [wrapper] Pilot exit status: 0
[2025-05-30 17:19:31] 2025-05-30 21:19:28,093 [wrapper] pandaids: 6673535992
[2025-05-30 17:19:31] 2025-05-30 21:19:28,739 [wrapper] cleanup supervisor_pilot 10813 43633
[2025-05-30 17:19:31] 2025-05-30 21:19:28,873 [wrapper] Test setup, not cleaning
[2025-05-30 17:19:31] 2025-05-30 21:19:28,936 [wrapper] apfmon messages muted
[2025-05-30 17:19:31] 2025-05-30 21:19:28,986 [wrapper] ==== wrapper stdout END ====
[2025-05-30 17:19:31] 2025-05-30 21:19:29,022 [wrapper] ==== wrapper stderr END ====
[2025-05-30 17:19:31]  *** Error codes and diagnostics ***
[2025-05-30 17:19:31]     "exeErrorCode": 0,
[2025-05-30 17:19:31]     "exeErrorDiag": "",
[2025-05-30 17:19:31]     "pilotErrorCode": 0,
[2025-05-30 17:19:31]     "pilotErrorDiag": "",
[2025-05-30 17:19:31]  *** Listing of results directory ***
[2025-05-30 17:19:31] total 415668
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas    495897 May 30 07:29 pilot3.tar.gz
[2025-05-30 17:19:31] -rwx------ 1 boincer umatlas     37140 May 30 08:04 runpilot2-wrapper.sh
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas      5111 May 30 08:04 queuedata.json
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas       100 May 30 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 17:19:31] -rwxr-xr-x 1 boincer umatlas      7986 May 30 08:04 run_atlas
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas       105 May 30 08:04 job.xml
[2025-05-30 17:19:31] -rw-r--r-- 2 boincer umatlas 225300475 May 30 08:04 EVNT.44871834._002553.pool.root.1
[2025-05-30 17:19:31] -rw-r--r-- 2 boincer umatlas     15093 May 30 08:04 start_atlas.sh
[2025-05-30 17:19:31] drwxrwx--x 2 boincer umatlas      4096 May 30 08:04 shared
[2025-05-30 17:19:31] -rw-r--r-- 2 boincer umatlas    508882 May 30 08:04 input.tar.gz
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas         0 May 30 08:04 boinc_lockfile
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas      2558 May 30 08:04 pandaJob.out
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas    988014 May 30 08:04 agis_schedconf.cvmfs.json
[2025-05-30 17:19:31] drwx------ 4 boincer umatlas      4096 May 30 08:04 pilot3
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas      6048 May 30 17:09 init_data.xml
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas 190464544 May 30 17:13 HITS.44871837._101818.pool.root.1
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas       531 May 30 17:14 boinc_task_state.xml
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas      1066 May 30 17:17 memory_monitor_summary.json
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas   1603667 May 30 17:17 agis_ddmendpoints.agis.ALL.json
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas    541123 May 30 17:17 log.44871837._101818.job.log.tgz.1
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas        95 May 30 17:19 pilot_heartbeat.json
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas      7760 May 30 17:19 heartbeat.json
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas      4746 May 30 17:19 pilotlog.txt
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas      8192 May 30 17:19 boinc_mmap_file
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas        28 May 30 17:19 wrapper_checkpoint.txt
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas   2477210 May 30 17:19 log.44871837._101818.job.log.1
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas       357 May 30 17:19 output.list
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas       620 May 30 17:19 runtime_log
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas   3041280 May 30 17:19 result.tar.gz
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas       664 May 30 17:19 zLHNDm4dDf7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWmeKDmzvJGUm.diag
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas      8660 May 30 17:19 runtime_log.err
[2025-05-30 17:19:31] -rw-r--r-- 1 boincer umatlas     20731 May 30 17:19 stderr.txt
[2025-05-30 17:19:31] HITS file was successfully produced:
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas 190464544 May 30 17:13 shared/HITS.pool.root.1
[2025-05-30 17:19:31]  *** Contents of shared directory: ***
[2025-05-30 17:19:31] total 409516
[2025-05-30 17:19:31] -rw-r--r-- 2 boincer umatlas 225300475 May 30 08:04 ATLAS.root_0
[2025-05-30 17:19:31] -rw-r--r-- 2 boincer umatlas     15093 May 30 08:04 start_atlas.sh
[2025-05-30 17:19:31] -rw-r--r-- 2 boincer umatlas    508882 May 30 08:04 input.tar.gz
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas 190464544 May 30 17:13 HITS.pool.root.1
[2025-05-30 17:19:31] -rw------- 1 boincer umatlas   3041280 May 30 17:19 result.tar.gz
17:19:33 (39928): run_atlas exited; CPU time 79988.208435
17:19:33 (39928): called boinc_finish(0)

</stderr_txt>
]]>

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