Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:47:24 (3676): wrapper (7.7.26015): starting
19:47:24 (3676): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 19:47:24] Arguments: --nthreads 8
[2025-05-29 19:47:24] Threads: 8
[2025-05-29 19:47:24] Checking for CVMFS
[2025-05-29 19:47:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 19:47:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 19:47:24] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 19:47:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 19:47:24] 2.11.2.0 2812 27733 98452 146580 2 1 18133352 20275200 1 130560 0 9776511 99.952 5883834 7013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-29 19:47:24] CVMFS is ok
[2025-05-29 19:47:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 19:47:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 19:47:24] Further information can be found at the LHC@home message board.
[2025-05-29 19:47:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 19:47:24] Checking for apptainer binary...
[2025-05-29 19:47:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 19:47:24] Running /usr/bin/apptainer --version
[2025-05-29 19:47:24] apptainer version 1.3.2-1.el7
[2025-05-29 19:47:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 19:47:26] c-204-3.aglt2.org
[2025-05-29 19:47:26] apptainer works
[2025-05-29 19:47:26] Set ATHENA_PROC_NUMBER=8
[2025-05-29 19:47:26] Set ATHENA_CORE_NUMBER=8
[2025-05-29 19:47:26] Starting ATLAS job with PandaID=6669443906
[2025-05-29 19:47:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 22:33:16]  *** The last 200 lines of the pilot log: ***
[2025-05-29 22:33:16] 2025-05-30 02:32:51,183 | INFO     | PID=7348 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-05-29 22:33:16] 2025-05-30 02:32:51,303 | INFO     | monitor loop #726: job 0:6669443906 is in state 'finished'
[2025-05-29 22:33:16] 2025-05-30 02:32:51,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-29 22:33:16] 2025-05-30 02:32:53,807 | INFO     | monitor loop #727: job 0:6669443906 is in state 'finished'
[2025-05-29 22:33:16] 2025-05-30 02:32:53,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,269 | INFO     | CPU arch script returned: x86-64-v2
[2025-05-29 22:33:16] 2025-05-30 02:32:56,270 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669443906/memory_monitor_summary.json (trf name=prmon)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,271 | INFO     | extracted standard info from prmon json
[2025-05-29 22:33:16] 2025-05-30 02:32:56,271 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 22:33:16] 2025-05-30 02:32:56,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 22:33:16] 2025-05-30 02:32:56,272 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 22:33:16] 2025-05-30 02:32:56,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 22:33:16] 2025-05-30 02:32:56,276 | INFO     | fitting pss+swap vs Time
[2025-05-29 22:33:16] 2025-05-30 02:32:56,276 | INFO     | sum of square deviations: 1318277740.5
[2025-05-29 22:33:16] 2025-05-30 02:32:56,278 | INFO     | sum of deviations: 5458431432.499996
[2025-05-29 22:33:16] 2025-05-30 02:32:56,278 | INFO     | mean x: 1748567408.5
[2025-05-29 22:33:16] 2025-05-30 02:32:56,278 | INFO     | mean y: 2503775.475308642
[2025-05-29 22:33:16] 2025-05-30 02:32:56,278 | INFO     | -- intersect: -7237575466.68911
[2025-05-29 22:33:16] 2025-05-30 02:32:56,278 | INFO     | intersect: -7237575466.68911
[2025-05-29 22:33:16] 2025-05-30 02:32:56,279 | INFO     | chi2: 1.6461851371988951
[2025-05-29 22:33:16] 2025-05-30 02:32:56,279 | INFO     | sum of square deviations: 1199940638.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,280 | INFO     | sum of deviations: 5276984766.999998
[2025-05-29 22:33:16] 2025-05-30 02:32:56,281 | INFO     | mean x: 1748567256.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,281 | INFO     | mean y: 2503541.7579617836
[2025-05-29 22:33:16] 2025-05-30 02:32:56,281 | INFO     | -- intersect: -7687179165.685258
[2025-05-29 22:33:16] 2025-05-30 02:32:56,281 | INFO     | intersect: -7687179165.685258
[2025-05-29 22:33:16] 2025-05-30 02:32:56,282 | INFO     | chi2: 1.6470561405962791
[2025-05-29 22:33:16] 2025-05-30 02:32:56,282 | INFO     | current chi2=1.6470561405962791 (change=-0.052910415584608676 %)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,282 | INFO     | right removable region: 156
[2025-05-29 22:33:16] 2025-05-30 02:32:56,282 | INFO     | sum of square deviations: 1199940638.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,283 | INFO     | sum of deviations: -18998236744.00002
[2025-05-29 22:33:16] 2025-05-30 02:32:56,283 | INFO     | mean x: 1748567561.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,283 | INFO     | mean y: 2534837.3375796177
[2025-05-29 22:33:16] 2025-05-30 02:32:56,283 | INFO     | -- intersect: 27686988080.062653
[2025-05-29 22:33:16] 2025-05-30 02:32:56,284 | INFO     | intersect: 27686988080.062653
[2025-05-29 22:33:16] 2025-05-30 02:32:56,284 | INFO     | chi2: 0.15794921107727594
[2025-05-29 22:33:16] 2025-05-30 02:32:56,284 | INFO     | current chi2=0.15794921107727594 (change=90.40513685198019 %)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,284 | INFO     | sum of square deviations: 1088905998.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,285 | INFO     | sum of deviations: -19151294527.999996
[2025-05-29 22:33:16] 2025-05-30 02:32:56,285 | INFO     | mean x: 1748567713.5
[2025-05-29 22:33:16] 2025-05-30 02:32:56,285 | INFO     | mean y: 2534973.1578947366
[2025-05-29 22:33:16] 2025-05-30 02:32:56,286 | INFO     | -- intersect: 30755727025.452953
[2025-05-29 22:33:16] 2025-05-30 02:32:56,286 | INFO     | intersect: 30755727025.452953
[2025-05-29 22:33:16] 2025-05-30 02:32:56,286 | INFO     | chi2: 0.13711782137358183
[2025-05-29 22:33:16] 2025-05-30 02:32:56,286 | INFO     | current chi2=0.13711782137358183 (change=13.188663344131832 %)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,286 | INFO     | left removable region: 20
[2025-05-29 22:33:16] 2025-05-30 02:32:56,286 | INFO     | sum of square deviations: 779958810.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,287 | INFO     | sum of deviations: -8900524762.0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,287 | INFO     | mean x: 1748567835.5
[2025-05-29 22:33:16] 2025-05-30 02:32:56,287 | INFO     | mean y: 2520089.1911764704
[2025-05-29 22:33:16] 2025-05-30 02:32:56,288 | INFO     | -- intersect: 19956357546.20316
[2025-05-29 22:33:16] 2025-05-30 02:32:56,288 | INFO     | intersect: 19956357546.20316
[2025-05-29 22:33:16] 2025-05-30 02:32:56,288 | INFO     | chi2: 0.09859604941253612
[2025-05-29 22:33:16] 2025-05-30 02:32:56,288 | INFO     | -- intersect: 19956357546.20316
[2025-05-29 22:33:16] 2025-05-30 02:32:56,288 | INFO     | current memory leak: -11.41 B/s (using 136 data points, chi2=0.10)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,289 | INFO     | ..............................
[2025-05-29 22:33:16] 2025-05-30 02:32:56,289 | INFO     | . Timing measurements:
[2025-05-29 22:33:16] 2025-05-30 02:32:56,289 | INFO     | . get job = 0 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,289 | INFO     | . initial setup = 2 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,289 | INFO     | . payload setup = 12 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,289 | INFO     | . stage-in = 0 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,290 | INFO     | . payload execution = 9872 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,290 | INFO     | . stage-out = 0 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,290 | INFO     | . log creation = 0 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,290 | INFO     | ..............................
[2025-05-29 22:33:16] 2025-05-30 02:32:56,897 | INFO     | 
[2025-05-29 22:33:16] 2025-05-30 02:32:56,897 | INFO     | job summary report
[2025-05-29 22:33:16] 2025-05-30 02:32:56,897 | INFO     | --------------------------------------------------
[2025-05-29 22:33:16] 2025-05-30 02:32:56,897 | INFO     | PanDA job id: 6669443906
[2025-05-29 22:33:16] 2025-05-30 02:32:56,898 | INFO     | task id: 44871837
[2025-05-29 22:33:16] 2025-05-30 02:32:56,898 | INFO     | errors: (none)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,898 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 22:33:16] 2025-05-30 02:32:56,898 | INFO     | pilot state: finished 
[2025-05-29 22:33:16] 2025-05-30 02:32:56,898 | INFO     | transexitcode: 0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,898 | INFO     | exeerrorcode: 0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,899 | INFO     | exeerrordiag: 
[2025-05-29 22:33:16] 2025-05-30 02:32:56,899 | INFO     | exitcode: 0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,899 | INFO     | exitmsg: OK
[2025-05-29 22:33:16] 2025-05-30 02:32:56,899 | INFO     | cpuconsumptiontime: 73467 s
[2025-05-29 22:33:16] 2025-05-30 02:32:56,899 | INFO     | nevents: 400
[2025-05-29 22:33:16] 2025-05-30 02:32:56,900 | INFO     | neventsw: 0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,900 | INFO     | pid: 13889
[2025-05-29 22:33:16] 2025-05-30 02:32:56,900 | INFO     | pgrp: 13889
[2025-05-29 22:33:16] 2025-05-30 02:32:56,900 | INFO     | corecount: 8
[2025-05-29 22:33:16] 2025-05-30 02:32:56,900 | INFO     | event service: False
[2025-05-29 22:33:16] 2025-05-30 02:32:56,900 | INFO     | sizes: {0: 2405233, 6: 2405439, 11: 2405467, 9888: 2433812, 9889: 2433811, 9890: 2442992, 9896: 2443106}
[2025-05-29 22:33:16] 2025-05-30 02:32:56,901 | INFO     | --------------------------------------------------
[2025-05-29 22:33:16] 2025-05-30 02:32:56,901 | INFO     | 
[2025-05-29 22:33:16] 2025-05-30 02:32:56,901 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-29 22:33:16] 2025-05-30 02:32:56,929 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,930 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,930 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,930 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,930 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,931 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,931 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,931 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,931 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,931 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,931 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,933 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,933 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 22:33:16] 2025-05-30 02:32:56,933 | INFO     | job 6669443906 has completed (purged errors)
[2025-05-29 22:33:16] 2025-05-30 02:32:56,933 | INFO     | overall cleanup function is called
[2025-05-29 22:33:16] 2025-05-30 02:32:57,941 | INFO     | --- collectZombieJob: --- 10, [13889]
[2025-05-29 22:33:16] 2025-05-30 02:32:57,942 | INFO     | zombie collector waiting for pid 13889
[2025-05-29 22:33:16] 2025-05-30 02:32:57,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 22:33:16] 2025-05-30 02:32:57,942 | INFO     | collected zombie processes
[2025-05-29 22:33:16] 2025-05-30 02:32:57,942 | INFO     | will attempt to kill all subprocesses of pid=13889
[2025-05-29 22:33:16] 2025-05-30 02:32:58,032 | INFO     | process IDs to be killed: [13889] (in reverse order)
[2025-05-29 22:33:16] 2025-05-30 02:32:58,088 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 22:33:16] 2025-05-30 02:32:58,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 22:33:16] 2025-05-30 02:32:58,093 | INFO     | did not find any defunct processes belonging to 13889
[2025-05-29 22:33:16] 2025-05-30 02:32:58,096 | INFO     | did not find any defunct processes belonging to 13889
[2025-05-29 22:33:16] 2025-05-30 02:32:58,096 | INFO     | ready for new job
[2025-05-29 22:33:16] 2025-05-30 02:32:58,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 22:33:16] 2025-05-30 02:32:58,098 | INFO     | **************************************
[2025-05-29 22:33:16] 2025-05-30 02:32:58,099 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 22:33:16] 2025-05-30 02:32:58,099 | INFO     | **************************************
[2025-05-29 22:33:16] 2025-05-30 02:32:58,099 | INFO     | 
[2025-05-29 22:33:16] 2025-05-30 02:32:58,099 | INFO     | architecture information:
[2025-05-29 22:33:16] 2025-05-30 02:32:58,100 | INFO     | executing command: cat /etc/os-release
[2025-05-29 22:33:16] 2025-05-30 02:32:58,116 | INFO     | cat /etc/os-release:
[2025-05-29 22:33:16] NAME="CentOS Linux"
[2025-05-29 22:33:16] VERSION="7 (Core)"
[2025-05-29 22:33:16] ID="centos"
[2025-05-29 22:33:16] ID_LIKE="rhel fedora"
[2025-05-29 22:33:16] VERSION_ID="7"
[2025-05-29 22:33:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 22:33:16] ANSI_COLOR="0;31"
[2025-05-29 22:33:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 22:33:16] HOME_URL="https://www.centos.org/"
[2025-05-29 22:33:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 22:33:16] 
[2025-05-29 22:33:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 22:33:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 22:33:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 22:33:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 22:33:16] 
[2025-05-29 22:33:16] 2025-05-30 02:32:58,116 | INFO     | **************************************
[2025-05-29 22:33:16] 2025-05-30 02:32:58,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-29 22:33:16] 2025-05-30 02:32:58,690 | INFO     | sufficient remaining disk space (18606981120 B)
[2025-05-29 22:33:16] 2025-05-30 02:32:58,691 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 22:33:16] 2025-05-30 02:32:58,691 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 22:33:16] 2025-05-30 02:32:58,691 | INFO     | update_server=False
[2025-05-29 22:33:16] 2025-05-30 02:32:58,691 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 22:33:16] 2025-05-30 02:32:58,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 22:33:16] 2025-05-30 02:32:58,818 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-29 22:33:16] 2025-05-30 02:32:58,818 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-29 22:33:16] 2025-05-30 02:32:58,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 22:33:16] 2025-05-30 02:32:58,819 | INFO     | will abort loop
[2025-05-29 22:33:16] 2025-05-30 02:32:58,845 | INFO     | all payload control threads have been joined
[2025-05-29 22:33:16] 2025-05-30 02:32:59,204 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 22:33:16] 2025-05-30 02:32:59,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 22:33:16] 2025-05-30 02:32:59,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 22:33:16] 2025-05-30 02:32:59,207 | INFO     | all data control threads have been joined
[2025-05-29 22:33:16] 2025-05-30 02:32:59,697 | INFO     | [job] retrieve thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:32:59,737 | INFO     | [payload] validate_post thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:32:59,798 | INFO     | [job] validate thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:32:59,824 | INFO     | [job] job monitor thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:32:59,851 | INFO     | [payload] control thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:32:59,892 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:32:59,940 | INFO     | all job control threads have been joined
[2025-05-29 22:33:16] 2025-05-30 02:33:00,115 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:00,165 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:00,167 | INFO     | [data] copytool_in thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:00,212 | INFO     | [data] control thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:00,697 | INFO     | [data] copytool_out thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:00,772 | INFO     | [payload] failed_post thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:00,945 | INFO     | [job] control thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:01,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 22:33:16] 2025-05-30 02:33:01,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 22:33:16] 2025-05-30 02:33:02,427 | INFO     | [job] queue monitor thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:05,158 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:09,356 | INFO     | job.realtimelogging is not enabled
[2025-05-29 22:33:16] 2025-05-30 02:33:10,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 22:33:16] 2025-05-30 02:33:11,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452164052800)>', '<ExcThread(monitor, started 140451562628864)>']
[2025-05-29 22:33:16] 2025-05-30 02:33:11,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 22:33:16] 2025-05-30 02:33:11,266 | INFO     | [monitor] control thread has ended
[2025-05-29 22:33:16] 2025-05-30 02:33:16,188 | INFO     | all workflow threads have been joined
[2025-05-29 22:33:16] 2025-05-30 02:33:16,195 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 22:33:16] 2025-05-30 02:33:16,195 | INFO     | traces error code: 0
[2025-05-29 22:33:16] 2025-05-30 02:33:16,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 22:33:16] 2025-05-30 02:33:16,296 [wrapper] ==== pilot stdout END ====
[2025-05-29 22:33:16] 2025-05-30 02:33:16,301 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 22:33:16] 2025-05-30 02:33:16,306 [wrapper] pilotpid: 7348
[2025-05-29 22:33:16] 2025-05-30 02:33:16,310 [wrapper] Pilot exit status: 0
[2025-05-29 22:33:16] 2025-05-30 02:33:16,330 [wrapper] pandaids: 6669443906
[2025-05-29 22:33:16] 2025-05-30 02:33:16,380 [wrapper] cleanup supervisor_pilot 18043 7349
[2025-05-29 22:33:16] 2025-05-30 02:33:16,386 [wrapper] Test setup, not cleaning
[2025-05-29 22:33:16] 2025-05-30 02:33:16,391 [wrapper] apfmon messages muted
[2025-05-29 22:33:16] 2025-05-30 02:33:16,395 [wrapper] ==== wrapper stdout END ====
[2025-05-29 22:33:16] 2025-05-30 02:33:16,401 [wrapper] ==== wrapper stderr END ====
[2025-05-29 22:33:16]  *** Error codes and diagnostics ***
[2025-05-29 22:33:16]     "exeErrorCode": 0,
[2025-05-29 22:33:16]     "exeErrorDiag": "",
[2025-05-29 22:33:16]     "pilotErrorCode": 0,
[2025-05-29 22:33:16]     "pilotErrorDiag": "",
[2025-05-29 22:33:16]  *** Listing of results directory ***
[2025-05-29 22:33:16] total 417940
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas    495897 May 29 03:06 pilot3.tar.gz
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas      5111 May 29 03:12 queuedata.json
[2025-05-29 22:33:16] -rwx------ 1 boincer umatlas     37140 May 29 03:14 runpilot2-wrapper.sh
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas       100 May 29 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 22:33:16] -rwxr-xr-x 1 boincer umatlas      7986 May 29 19:47 run_atlas
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas       105 May 29 19:47 job.xml
[2025-05-29 22:33:16] -rw-r--r-- 2 boincer umatlas 223772157 May 29 19:47 EVNT.44871834._003810.pool.root.1
[2025-05-29 22:33:16] -rw-r--r-- 2 boincer umatlas     15093 May 29 19:47 start_atlas.sh
[2025-05-29 22:33:16] drwxrwx--x 2 boincer umatlas      4096 May 29 19:47 shared
[2025-05-29 22:33:16] -rw-r--r-- 2 boincer umatlas    508878 May 29 19:47 input.tar.gz
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas         0 May 29 19:47 boinc_lockfile
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas      2558 May 29 19:47 pandaJob.out
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas    992366 May 29 19:47 agis_schedconf.cvmfs.json
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas   1603667 May 29 19:47 agis_ddmendpoints.agis.ALL.json
[2025-05-29 22:33:16] drwx------ 4 boincer umatlas      4096 May 29 19:47 pilot3
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas      5824 May 29 22:27 init_data.xml
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas        95 May 29 22:32 pilot_heartbeat.json
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas 197894607 May 29 22:32 HITS.44871837._096668.pool.root.1
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas       529 May 29 22:32 boinc_task_state.xml
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas      1049 May 29 22:32 memory_monitor_summary.json
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas    347118 May 29 22:32 log.44871837._096668.job.log.tgz.1
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas      7741 May 29 22:32 heartbeat.json
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas      8192 May 29 22:33 boinc_mmap_file
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas        28 May 29 22:33 wrapper_checkpoint.txt
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas      4611 May 29 22:33 pilotlog.txt
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas    887364 May 29 22:33 log.44871837._096668.job.log.1
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas       357 May 29 22:33 output.list
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas       620 May 29 22:33 runtime_log
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas   1249280 May 29 22:33 result.tar.gz
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas      8654 May 29 22:33 runtime_log.err
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas       660 May 29 22:33 gt6NDmbeme7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmt3dKDmvRgK7n.diag
[2025-05-29 22:33:16] -rw-r--r-- 1 boincer umatlas     21090 May 29 22:33 stderr.txt
[2025-05-29 22:33:16] HITS file was successfully produced:
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas 197894607 May 29 22:32 shared/HITS.pool.root.1
[2025-05-29 22:33:16]  *** Contents of shared directory: ***
[2025-05-29 22:33:16] total 413528
[2025-05-29 22:33:16] -rw-r--r-- 2 boincer umatlas 223772157 May 29 19:47 ATLAS.root_0
[2025-05-29 22:33:16] -rw-r--r-- 2 boincer umatlas     15093 May 29 19:47 start_atlas.sh
[2025-05-29 22:33:16] -rw-r--r-- 2 boincer umatlas    508878 May 29 19:47 input.tar.gz
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas 197894607 May 29 22:32 HITS.pool.root.1
[2025-05-29 22:33:16] -rw------- 1 boincer umatlas   1249280 May 29 22:33 result.tar.gz
22:33:17 (3676): run_atlas exited; CPU time 73407.438386
22:33:17 (3676): called boinc_finish(0)

</stderr_txt>
]]>

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