Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:17:45 (4641): wrapper (7.7.26015): starting
14:17:45 (4641): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 14:17:45] Arguments: --nthreads 8
[2025-05-30 14:17:45] Threads: 8
[2025-05-30 14:17:45] Checking for CVMFS
[2025-05-30 14:17:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 14:17:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 14:17:46] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 14:17:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 14:17:47] 2.11.2.0 13816 26020 88164 146599 3 113 16829028 25165825 4355 130560 0 13610302 99.804 15128297 2115 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-30 14:17:47] CVMFS is ok
[2025-05-30 14:17:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 14:17:47] Checking for apptainer binary...
[2025-05-30 14:17:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 14:17:47] Running /usr/bin/apptainer --version
[2025-05-30 14:17:47] apptainer version 1.3.2-1.el7
[2025-05-30 14:17:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 14:17:49] cg-vwn369.simple-grid.lan
[2025-05-30 14:17:49] apptainer works
[2025-05-30 14:17:49] Set ATHENA_PROC_NUMBER=8
[2025-05-30 14:17:49] Set ATHENA_CORE_NUMBER=8
[2025-05-30 14:17:49] Starting ATLAS job with PandaID=6671945100
[2025-05-30 14:17:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 19:19:46]  *** The last 200 lines of the pilot log: ***
[2025-05-30 19:19:46] 2025-05-30 17:16:57,324 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6671945100/memory_monitor_summary.json (trf name=prmon)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,325 | INFO     | extracted standard info from prmon json
[2025-05-30 19:19:46] 2025-05-30 17:16:57,325 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 19:19:46] 2025-05-30 17:16:57,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 19:19:46] 2025-05-30 17:16:57,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 19:19:46] 2025-05-30 17:16:57,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 19:19:46] 2025-05-30 17:16:57,331 | INFO     | fitting pss+swap vs Time
[2025-05-30 19:19:46] 2025-05-30 17:16:57,332 | INFO     | sum of square deviations: 7720081493.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,343 | INFO     | sum of deviations: -56656471057.5
[2025-05-30 19:19:46] 2025-05-30 17:16:57,343 | INFO     | mean x: 1748616417.5
[2025-05-30 19:19:46] 2025-05-30 17:16:57,343 | INFO     | mean y: 2528488.941780822
[2025-05-30 19:19:46] 2025-05-30 17:16:57,344 | INFO     | -- intersect: 12835350984.220858
[2025-05-30 19:19:46] 2025-05-30 17:16:57,344 | INFO     | intersect: 12835350984.220858
[2025-05-30 19:19:46] 2025-05-30 17:16:57,344 | INFO     | chi2: 2.5457900129900803
[2025-05-30 19:19:46] 2025-05-30 17:16:57,345 | INFO     | sum of square deviations: 7330250928.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,347 | INFO     | sum of deviations: -35931373387.999985
[2025-05-30 19:19:46] 2025-05-30 17:16:57,347 | INFO     | mean x: 1748616265.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,348 | INFO     | mean y: 2536491.1114982576
[2025-05-30 19:19:46] 2025-05-30 17:16:57,348 | INFO     | -- intersect: 8573891625.769575
[2025-05-30 19:19:46] 2025-05-30 17:16:57,348 | INFO     | intersect: 8573891625.769575
[2025-05-30 19:19:46] 2025-05-30 17:16:57,348 | INFO     | chi2: 1.7768678749546745
[2025-05-30 19:19:46] 2025-05-30 17:16:57,348 | INFO     | current chi2=1.7768678749546745 (change=30.203674855817813 %)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,349 | INFO     | sum of square deviations: 6953769450.5
[2025-05-30 19:19:46] 2025-05-30 17:16:57,351 | INFO     | sum of deviations: -34970367096.500015
[2025-05-30 19:19:46] 2025-05-30 17:16:57,352 | INFO     | mean x: 1748616112.5
[2025-05-30 19:19:46] 2025-05-30 17:16:57,352 | INFO     | mean y: 2536880.4078014186
[2025-05-30 19:19:46] 2025-05-30 17:16:57,352 | INFO     | -- intersect: 8796292238.60175
[2025-05-30 19:19:46] 2025-05-30 17:16:57,352 | INFO     | intersect: 8796292238.60175
[2025-05-30 19:19:46] 2025-05-30 17:16:57,352 | INFO     | chi2: 1.7755951425327523
[2025-05-30 19:19:46] 2025-05-30 17:16:57,352 | INFO     | current chi2=1.7755951425327523 (change=0.07162785932829295 %)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,353 | INFO     | right removable region: 281
[2025-05-30 19:19:46] 2025-05-30 17:16:57,353 | INFO     | sum of square deviations: 7330250928.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,356 | INFO     | sum of deviations: -102898288712.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,356 | INFO     | mean x: 1748616570.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,356 | INFO     | mean y: 2546443.8327526134
[2025-05-30 19:19:46] 2025-05-30 17:16:57,356 | INFO     | -- intersect: 24548725617.475246
[2025-05-30 19:19:46] 2025-05-30 17:16:57,356 | INFO     | intersect: 24548725617.475246
[2025-05-30 19:19:46] 2025-05-30 17:16:57,357 | INFO     | chi2: 1.0498031183452934
[2025-05-30 19:19:46] 2025-05-30 17:16:57,357 | INFO     | current chi2=1.0498031183452934 (change=58.76316927206895 %)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,365 | INFO     | sum of square deviations: 6953769450.5
[2025-05-30 19:19:46] 2025-05-30 17:16:57,367 | INFO     | sum of deviations: -101329054806.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,368 | INFO     | mean x: 1748616722.5
[2025-05-30 19:19:46] 2025-05-30 17:16:57,368 | INFO     | mean y: 2545786.9929078016
[2025-05-30 19:19:46] 2025-05-30 17:16:57,368 | INFO     | -- intersect: 25483068397.093296
[2025-05-30 19:19:46] 2025-05-30 17:16:57,368 | INFO     | intersect: 25483068397.093296
[2025-05-30 19:19:46] 2025-05-30 17:16:57,368 | INFO     | chi2: 1.0331826649947733
[2025-05-30 19:19:46] 2025-05-30 17:16:57,369 | INFO     | current chi2=1.0331826649947733 (change=1.5831971786021515 %)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,369 | INFO     | left removable region: 20
[2025-05-30 19:19:46] 2025-05-30 17:16:57,369 | INFO     | sum of square deviations: 5513070810.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,371 | INFO     | sum of deviations: -63578577603.99999
[2025-05-30 19:19:46] 2025-05-30 17:16:57,371 | INFO     | mean x: 1748616692.0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,371 | INFO     | mean y: 2548326.3524904214
[2025-05-30 19:19:46] 2025-05-30 17:16:57,372 | INFO     | -- intersect: 20168181216.522415
[2025-05-30 19:19:46] 2025-05-30 17:16:57,372 | INFO     | intersect: 20168181216.522415
[2025-05-30 19:19:46] 2025-05-30 17:16:57,372 | INFO     | chi2: 0.23149471947755174
[2025-05-30 19:19:46] 2025-05-30 17:16:57,372 | INFO     | -- intersect: 20168181216.522415
[2025-05-30 19:19:46] 2025-05-30 17:16:57,372 | INFO     | current memory leak: -11.53 B/s (using 261 data points, chi2=0.23)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,373 | INFO     | ..............................
[2025-05-30 19:19:46] 2025-05-30 17:16:57,373 | INFO     | . Timing measurements:
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . get job = 0 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . initial setup = 2 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . payload setup = 13 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . stage-in = 0 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . payload execution = 17792 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . stage-out = 4 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | . log creation = 1 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,374 | INFO     | ..............................
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | 
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | job summary report
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | --------------------------------------------------
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | PanDA job id: 6671945100
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | task id: 44871837
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | errors: (none)
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 19:19:46] 2025-05-30 17:16:57,763 | INFO     | pilot state: finished 
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | transexitcode: 0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | exeerrorcode: 0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | exeerrordiag: 
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | exitcode: 0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | exitmsg: OK
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | cpuconsumptiontime: 67792 s
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | nevents: 400
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | neventsw: 0
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | pid: 17517
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | pgrp: 17517
[2025-05-30 19:19:46] 2025-05-30 17:16:57,764 | INFO     | corecount: 8
[2025-05-30 19:19:46] 2025-05-30 17:16:57,765 | INFO     | event service: False
[2025-05-30 19:19:46] 2025-05-30 17:16:57,765 | INFO     | sizes: {0: 2405013, 1: 2405212, 9: 2405418, 12: 2405446, 17809: 2436909, 17815: 2445850, 17816: 2446034, 17907: 2446204}
[2025-05-30 19:19:46] 2025-05-30 17:16:57,765 | INFO     | --------------------------------------------------
[2025-05-30 19:19:46] 2025-05-30 17:16:57,765 | INFO     | 
[2025-05-30 19:19:46] 2025-05-30 17:16:57,765 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-30 19:19:46] 2025-05-30 17:16:58,176 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | job 6671945100 has completed (purged errors)
[2025-05-30 19:19:46] 2025-05-30 17:16:58,179 | INFO     | overall cleanup function is called
[2025-05-30 19:19:46] 2025-05-30 17:16:59,189 | INFO     | --- collectZombieJob: --- 10, [17517]
[2025-05-30 19:19:46] 2025-05-30 17:16:59,189 | INFO     | zombie collector waiting for pid 17517
[2025-05-30 19:19:46] 2025-05-30 17:16:59,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 19:19:46] 2025-05-30 17:16:59,189 | INFO     | collected zombie processes
[2025-05-30 19:19:46] 2025-05-30 17:16:59,189 | INFO     | will attempt to kill all subprocesses of pid=17517
[2025-05-30 19:19:46] 2025-05-30 17:16:59,313 | INFO     | process IDs to be killed: [17517] (in reverse order)
[2025-05-30 19:19:46] 2025-05-30 17:17:00,180 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 19:19:46] 2025-05-30 17:17:00,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 19:19:46] 2025-05-30 17:17:00,184 | INFO     | did not find any defunct processes belonging to 17517
[2025-05-30 19:19:46] 2025-05-30 17:17:00,192 | INFO     | did not find any defunct processes belonging to 17517
[2025-05-30 19:19:46] 2025-05-30 17:17:00,193 | INFO     | ready for new job
[2025-05-30 19:19:46] 2025-05-30 17:17:00,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 19:19:46] 2025-05-30 17:17:00,195 | INFO     | **************************************
[2025-05-30 19:19:46] 2025-05-30 17:17:00,195 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 19:19:46] 2025-05-30 17:17:00,195 | INFO     | **************************************
[2025-05-30 19:19:46] 2025-05-30 17:17:00,195 | INFO     | 
[2025-05-30 19:19:46] 2025-05-30 17:17:00,196 | INFO     | pilot is running in a VM
[2025-05-30 19:19:46] 2025-05-30 17:17:00,196 | INFO     | architecture information:
[2025-05-30 19:19:46] 2025-05-30 17:17:00,213 | INFO     | executing command: cat /etc/os-release
[2025-05-30 19:19:46] 2025-05-30 17:17:00,372 | INFO     | cat /etc/os-release:
[2025-05-30 19:19:46] NAME="CentOS Linux"
[2025-05-30 19:19:46] VERSION="7 (Core)"
[2025-05-30 19:19:46] ID="centos"
[2025-05-30 19:19:46] ID_LIKE="rhel fedora"
[2025-05-30 19:19:46] VERSION_ID="7"
[2025-05-30 19:19:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 19:19:46] ANSI_COLOR="0;31"
[2025-05-30 19:19:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 19:19:46] HOME_URL="https://www.centos.org/"
[2025-05-30 19:19:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 19:19:46] 
[2025-05-30 19:19:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 19:19:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 19:19:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 19:19:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 19:19:46] 
[2025-05-30 19:19:46] 2025-05-30 17:17:00,372 | INFO     | **************************************
[2025-05-30 19:19:46] 2025-05-30 17:17:00,875 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-30 19:19:46] 2025-05-30 17:17:01,044 | INFO     | sufficient remaining disk space (496837328896 B)
[2025-05-30 19:19:46] 2025-05-30 17:17:01,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 19:19:46] 2025-05-30 17:17:01,045 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 19:19:46] 2025-05-30 17:17:01,045 | INFO     | update_server=False
[2025-05-30 19:19:46] 2025-05-30 17:17:01,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 19:19:46] 2025-05-30 17:17:01,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 19:19:46] 2025-05-30 17:17:01,051 | INFO     | aborting loop
[2025-05-30 19:19:46] 2025-05-30 17:17:01,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 19:19:46] 2025-05-30 17:17:01,992 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 19:19:46] 2025-05-30 17:17:01,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 19:19:46] 2025-05-30 17:17:01,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 19:19:46] 2025-05-30 17:17:02,051 | INFO     | [job] retrieve thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:02,057 | INFO     | [job] job monitor thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:02,121 | INFO     | all job control threads have been joined
[2025-05-30 19:19:46] 2025-05-30 17:17:02,129 | INFO     | all data control threads have been joined
[2025-05-30 19:19:46] 2025-05-30 17:17:02,329 | INFO     | [data] copytool_in thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:02,331 | INFO     | all payload control threads have been joined
[2025-05-30 19:19:46] 2025-05-30 17:17:02,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:02,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 19:19:46] 2025-05-30 17:17:02,716 | INFO     | [payload] validate_post thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:02,791 | INFO     | [job] validate thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:02,798 | INFO     | [payload] failed_post thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,127 | INFO     | [job] control thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,135 | INFO     | [data] control thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,337 | INFO     | [payload] control thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,402 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,410 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 19:19:46] 2025-05-30 17:17:03,529 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,587 | INFO     | [data] copytool_out thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:03,591 | INFO     | [job] queue monitor thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:07,444 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 19:19:46] 2025-05-30 17:17:08,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165014263616)>', '<ExcThread(monitor, started 140164445763328)>']
[2025-05-30 19:19:46] 2025-05-30 17:17:09,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 19:19:46] 2025-05-30 17:17:09,034 | INFO     | [monitor] control thread has ended
[2025-05-30 19:19:46] 2025-05-30 17:17:13,204 | INFO     | all workflow threads have been joined
[2025-05-30 19:19:46] 2025-05-30 17:17:13,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 19:19:46] 2025-05-30 17:17:13,204 | INFO     | traces error code: 0
[2025-05-30 19:19:46] 2025-05-30 17:17:13,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 19:19:46] 2025-05-30 17:17:13,592 [wrapper] ==== pilot stdout END ====
[2025-05-30 19:19:46] 2025-05-30 17:17:13,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 19:19:46] 2025-05-30 17:17:13,719 [wrapper] pilotpid: 8968
[2025-05-30 19:19:46] 2025-05-30 17:17:13,770 [wrapper] Pilot exit status: 0
[2025-05-30 19:19:46] 2025-05-30 17:17:14,204 [wrapper] pandaids: 6671945100
[2025-05-30 19:19:46] 2025-05-30 17:17:15,076 [wrapper] cleanup supervisor_pilot 16704 8969
[2025-05-30 19:19:46] 2025-05-30 17:17:15,162 [wrapper] Test setup, not cleaning
[2025-05-30 19:19:46] 2025-05-30 17:17:15,244 [wrapper] apfmon messages muted
[2025-05-30 19:19:46] 2025-05-30 17:17:15,294 [wrapper] ==== wrapper stdout END ====
[2025-05-30 19:19:46] 2025-05-30 17:17:15,401 [wrapper] ==== wrapper stderr END ====
[2025-05-30 19:19:46]  *** Error codes and diagnostics ***
[2025-05-30 19:19:46]     "exeErrorCode": 0,
[2025-05-30 19:19:46]     "exeErrorDiag": "",
[2025-05-30 19:19:46]     "pilotErrorCode": 0,
[2025-05-30 19:19:46]     "pilotErrorDiag": "",
[2025-05-30 19:19:46]  *** Listing of results directory ***
[2025-05-30 19:19:46] total 419252
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc    495897 May 29 15:13 pilot3.tar.gz
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc      5111 May 29 15:13 queuedata.json
[2025-05-30 19:19:46] -rwx------. 1 boinc boinc     37140 May 29 15:14 runpilot2-wrapper.sh
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc       100 May 30 14:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 19:19:46] -rwxr-xr-x. 1 boinc boinc      7986 May 30 14:17 run_atlas
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc       105 May 30 14:17 job.xml
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc      6371 May 30 14:17 init_data.xml
[2025-05-30 19:19:46] -rw-r--r--. 2 boinc boinc 224370956 May 30 14:17 EVNT.44871834._003331.pool.root.1
[2025-05-30 19:19:46] -rw-r--r--. 2 boinc boinc     15093 May 30 14:17 start_atlas.sh
[2025-05-30 19:19:46] drwxrwx--x. 2 boinc boinc        68 May 30 14:17 shared
[2025-05-30 19:19:46] -rw-r--r--. 2 boinc boinc    508881 May 30 14:17 input.tar.gz
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc         0 May 30 14:17 boinc_lockfile
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc      2559 May 30 14:17 pandaJob.out
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc    987998 May 30 14:18 agis_schedconf.cvmfs.json
[2025-05-30 19:19:46] drwx------. 4 boinc boinc      4096 May 30 14:18 pilot3
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc 197212591 May 30 19:14 HITS.44871837._100674.pool.root.1
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc       531 May 30 19:14 boinc_task_state.xml
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc      1021 May 30 19:15 memory_monitor_summary.json
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc   1603667 May 30 19:15 agis_ddmendpoints.agis.ALL.json
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc    416663 May 30 19:15 log.44871837._100674.job.log.tgz.1
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc        95 May 30 19:16 pilot_heartbeat.json
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc      7694 May 30 19:16 heartbeat.json
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc      4416 May 30 19:17 pilotlog.txt
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc   1535818 May 30 19:17 log.44871837._100674.job.log.1
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc       357 May 30 19:17 output.list
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc       620 May 30 19:17 runtime_log
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc   1976320 May 30 19:17 result.tar.gz
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc      8659 May 30 19:17 runtime_log.err
[2025-05-30 19:19:46] -rw-------. 1 boinc boinc       657 May 30 19:17 4iyNDmKGse7n9Rq4apOajLDm4fhM0noT9bVof3QYDm9FVKDmxorqEm.diag
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc      8192 May 30 19:19 boinc_mmap_file
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc        28 May 30 19:19 wrapper_checkpoint.txt
[2025-05-30 19:19:46] -rw-r--r--. 1 boinc boinc     20429 May 30 19:19 stderr.txt
[2025-05-30 19:19:47] HITS file was successfully produced:
[2025-05-30 19:19:47] -rw-------. 1 boinc boinc 197212591 May 30 19:14 shared/HITS.pool.root.1
[2025-05-30 19:19:47]  *** Contents of shared directory: ***
[2025-05-30 19:19:47] total 414156
[2025-05-30 19:19:47] -rw-r--r--. 2 boinc boinc 224370956 May 30 14:17 ATLAS.root_0
[2025-05-30 19:19:47] -rw-r--r--. 2 boinc boinc     15093 May 30 14:17 start_atlas.sh
[2025-05-30 19:19:47] -rw-r--r--. 2 boinc boinc    508881 May 30 14:17 input.tar.gz
[2025-05-30 19:19:47] -rw-------. 1 boinc boinc 197212591 May 30 19:14 HITS.pool.root.1
[2025-05-30 19:19:47] -rw-------. 1 boinc boinc   1976320 May 30 19:17 result.tar.gz
19:19:48 (4641): run_atlas exited; CPU time 68016.155371
19:19:48 (4641): called boinc_finish(0)

</stderr_txt>
]]>

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