Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:22:45 (27441): wrapper (7.7.26015): starting
13:22:45 (27441): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 13:22:45] Arguments: --nthreads 8
[2025-05-30 13:22:45] Threads: 8
[2025-05-30 13:22:45] Checking for CVMFS
[2025-05-30 13:22:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 13:22:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 13:22:46] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 13:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 13:22:47] 2.11.2.0 14349 26054 83256 146596 2 16 22408432 25165824 4634 130560 0 13469513 99.803 15246299 4317 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-30 13:22:47] CVMFS is ok
[2025-05-30 13:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 13:22:47] Checking for apptainer binary...
[2025-05-30 13:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 13:22:47] Running /usr/bin/apptainer --version
[2025-05-30 13:22:47] apptainer version 1.3.2-1.el7
[2025-05-30 13:22:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 13:23:01] cg-vwn229.simple-grid.lan
[2025-05-30 13:23:01] apptainer works
[2025-05-30 13:23:01] Set ATHENA_PROC_NUMBER=8
[2025-05-30 13:23:01] Set ATHENA_CORE_NUMBER=8
[2025-05-30 13:23:01] Starting ATLAS job with PandaID=6669443654
[2025-05-30 13:23:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 18:56:21]  *** The last 200 lines of the pilot log: ***
[2025-05-30 18:56:21] 2025-05-30 16:43:15,623 | INFO     | extracted standard info from prmon json
[2025-05-30 18:56:21] 2025-05-30 16:43:15,623 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 18:56:21] 2025-05-30 16:43:15,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 18:56:21] 2025-05-30 16:43:15,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 18:56:21] 2025-05-30 16:43:15,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 18:56:21] 2025-05-30 16:43:15,628 | INFO     | fitting pss+swap vs Time
[2025-05-30 18:56:21] 2025-05-30 16:43:15,628 | INFO     | sum of square deviations: 8540720135.5
[2025-05-30 18:56:21] 2025-05-30 16:43:15,630 | INFO     | sum of deviations: 94751598747.5
[2025-05-30 18:56:21] 2025-05-30 16:43:15,630 | INFO     | mean x: 1748614059.5
[2025-05-30 18:56:21] 2025-05-30 16:43:15,630 | INFO     | mean y: 2462546.4602649007
[2025-05-30 18:56:21] 2025-05-30 16:43:15,630 | INFO     | -- intersect: -19396835768.12869
[2025-05-30 18:56:21] 2025-05-30 16:43:15,630 | INFO     | intersect: -19396835768.12869
[2025-05-30 18:56:21] 2025-05-30 16:43:15,631 | INFO     | chi2: 7.284773181668654
[2025-05-30 18:56:21] 2025-05-30 16:43:15,631 | INFO     | sum of square deviations: 8123493708.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,633 | INFO     | sum of deviations: 114444081218.99997
[2025-05-30 18:56:21] 2025-05-30 16:43:15,633 | INFO     | mean x: 1748613907.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,633 | INFO     | mean y: 2469639.606060606
[2025-05-30 18:56:21] 2025-05-30 16:43:15,633 | INFO     | -- intersect: -24632068058.90961
[2025-05-30 18:56:21] 2025-05-30 16:43:15,634 | INFO     | intersect: -24632068058.90961
[2025-05-30 18:56:21] 2025-05-30 16:43:15,634 | INFO     | chi2: 6.468149749842569
[2025-05-30 18:56:21] 2025-05-30 16:43:15,634 | INFO     | current chi2=6.468149749842569 (change=11.21000491657077 %)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,634 | INFO     | right removable region: 296
[2025-05-30 18:56:21] 2025-05-30 16:43:15,634 | INFO     | sum of square deviations: 8123493708.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,636 | INFO     | sum of deviations: -11013917769.000002
[2025-05-30 18:56:21] 2025-05-30 16:43:15,636 | INFO     | mean x: 1748614212.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,636 | INFO     | mean y: 2501180.0168350167
[2025-05-30 18:56:21] 2025-05-30 16:43:15,636 | INFO     | -- intersect: 2373290625.1673155
[2025-05-30 18:56:21] 2025-05-30 16:43:15,636 | INFO     | intersect: 2373290625.1673155
[2025-05-30 18:56:21] 2025-05-30 16:43:15,637 | INFO     | chi2: 2.504493508260775
[2025-05-30 18:56:21] 2025-05-30 16:43:15,637 | INFO     | current chi2=2.504493508260775 (change=65.62015802272249 %)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,637 | INFO     | sum of square deviations: 7720081493.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,639 | INFO     | sum of deviations: -63006043133.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,639 | INFO     | mean x: 1748614364.5
[2025-05-30 18:56:21] 2025-05-30 16:43:15,639 | INFO     | mean y: 2520739.890410959
[2025-05-30 18:56:21] 2025-05-30 16:43:15,639 | INFO     | -- intersect: 14273519326.183493
[2025-05-30 18:56:21] 2025-05-30 16:43:15,639 | INFO     | intersect: 14273519326.183493
[2025-05-30 18:56:21] 2025-05-30 16:43:15,639 | INFO     | chi2: 1.1020793413689236
[2025-05-30 18:56:21] 2025-05-30 16:43:15,640 | INFO     | current chi2=1.1020793413689236 (change=55.99591942507155 %)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,640 | INFO     | sum of square deviations: 7330250928.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | sum of deviations: -66090812035.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | mean x: 1748614517.0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | mean y: 2521933.4216027874
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | -- intersect: 15768333295.11409
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | intersect: 15768333295.11409
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | chi2: 1.0819543885062919
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | current chi2=1.0819543885062919 (change=1.8260892938646276 %)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,642 | INFO     | left removable region: 30
[2025-05-30 18:56:21] 2025-05-30 16:43:15,643 | INFO     | sum of square deviations: 5836025702.5
[2025-05-30 18:56:21] 2025-05-30 16:43:15,644 | INFO     | sum of deviations: -17649644382.499992
[2025-05-30 18:56:21] 2025-05-30 16:43:15,644 | INFO     | mean x: 1748614791.5
[2025-05-30 18:56:21] 2025-05-30 16:43:15,644 | INFO     | mean y: 2518652.560150376
[2025-05-30 18:56:21] 2025-05-30 16:43:15,645 | INFO     | -- intersect: 5290780014.86596
[2025-05-30 18:56:21] 2025-05-30 16:43:15,645 | INFO     | intersect: 5290780014.86596
[2025-05-30 18:56:21] 2025-05-30 16:43:15,645 | INFO     | chi2: 0.12103704972561878
[2025-05-30 18:56:21] 2025-05-30 16:43:15,645 | INFO     | -- intersect: 5290780014.86596
[2025-05-30 18:56:21] 2025-05-30 16:43:15,645 | INFO     | current memory leak: -3.02 B/s (using 266 data points, chi2=0.12)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | ..............................
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . Timing measurements:
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . get job = 0 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . initial setup = 4 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . payload setup = 178 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . stage-in = 0 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . payload execution = 18565 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . stage-out = 3 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,646 | INFO     | . log creation = 0 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,647 | INFO     | ..............................
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | 
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | job summary report
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | --------------------------------------------------
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | PanDA job id: 6669443654
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | task id: 44871837
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | errors: (none)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | pilot state: finished 
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | transexitcode: 0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | exeerrorcode: 0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | exeerrordiag: 
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | exitcode: 0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | exitmsg: OK
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | cpuconsumptiontime: 69714 s
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | nevents: 400
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | neventsw: 0
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | pid: 7809
[2025-05-30 18:56:21] 2025-05-30 16:43:15,773 | INFO     | pgrp: 7809
[2025-05-30 18:56:21] 2025-05-30 16:43:15,774 | INFO     | corecount: 8
[2025-05-30 18:56:21] 2025-05-30 16:43:15,774 | INFO     | event service: False
[2025-05-30 18:56:21] 2025-05-30 16:43:15,774 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 23: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 66: 2405558, 76: 2405586, 87: 2405876, 18747: 2437566, 18748: 2437
[2025-05-30 18:56:21] 2025-05-30 16:43:15,774 | INFO     | --------------------------------------------------
[2025-05-30 18:56:21] 2025-05-30 16:43:15,774 | INFO     | 
[2025-05-30 18:56:21] 2025-05-30 16:43:15,774 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,889 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,889 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,889 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 18:56:21] 2025-05-30 16:43:15,889 | INFO     | job 6669443654 has completed (purged errors)
[2025-05-30 18:56:21] 2025-05-30 16:43:15,889 | INFO     | overall cleanup function is called
[2025-05-30 18:56:21] 2025-05-30 16:43:16,899 | INFO     | --- collectZombieJob: --- 10, [7809]
[2025-05-30 18:56:21] 2025-05-30 16:43:16,899 | INFO     | zombie collector waiting for pid 7809
[2025-05-30 18:56:21] 2025-05-30 16:43:16,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 18:56:21] 2025-05-30 16:43:16,900 | INFO     | collected zombie processes
[2025-05-30 18:56:21] 2025-05-30 16:43:16,900 | INFO     | will attempt to kill all subprocesses of pid=7809
[2025-05-30 18:56:21] 2025-05-30 16:43:17,013 | INFO     | process IDs to be killed: [7809] (in reverse order)
[2025-05-30 18:56:21] 2025-05-30 16:43:17,210 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 18:56:21] 2025-05-30 16:43:17,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 18:56:21] 2025-05-30 16:43:17,213 | INFO     | did not find any defunct processes belonging to 7809
[2025-05-30 18:56:21] 2025-05-30 16:43:17,216 | INFO     | did not find any defunct processes belonging to 7809
[2025-05-30 18:56:21] 2025-05-30 16:43:17,217 | INFO     | ready for new job
[2025-05-30 18:56:21] 2025-05-30 16:43:17,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 18:56:21] 2025-05-30 16:43:17,219 | INFO     | **************************************
[2025-05-30 18:56:21] 2025-05-30 16:43:17,219 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 18:56:21] 2025-05-30 16:43:17,219 | INFO     | **************************************
[2025-05-30 18:56:21] 2025-05-30 16:43:17,219 | INFO     | 
[2025-05-30 18:56:21] 2025-05-30 16:43:17,220 | INFO     | pilot is running in a VM
[2025-05-30 18:56:21] 2025-05-30 16:43:17,220 | INFO     | architecture information:
[2025-05-30 18:56:21] 2025-05-30 16:43:17,225 | INFO     | executing command: cat /etc/os-release
[2025-05-30 18:56:21] 2025-05-30 16:43:17,327 | INFO     | cat /etc/os-release:
[2025-05-30 18:56:21] NAME="CentOS Linux"
[2025-05-30 18:56:21] VERSION="7 (Core)"
[2025-05-30 18:56:21] ID="centos"
[2025-05-30 18:56:21] ID_LIKE="rhel fedora"
[2025-05-30 18:56:21] VERSION_ID="7"
[2025-05-30 18:56:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 18:56:21] ANSI_COLOR="0;31"
[2025-05-30 18:56:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 18:56:21] HOME_URL="https://www.centos.org/"
[2025-05-30 18:56:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 18:56:21] 
[2025-05-30 18:56:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 18:56:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 18:56:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 18:56:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 18:56:21] 
[2025-05-30 18:56:21] 2025-05-30 16:43:17,328 | INFO     | **************************************
[2025-05-30 18:56:21] 2025-05-30 16:43:17,831 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-05-30 18:56:21] 2025-05-30 16:43:18,057 | INFO     | sufficient remaining disk space (495693332480 B)
[2025-05-30 18:56:21] 2025-05-30 16:43:18,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 18:56:21] 2025-05-30 16:43:18,058 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 18:56:21] 2025-05-30 16:43:18,058 | INFO     | update_server=False
[2025-05-30 18:56:21] 2025-05-30 16:43:18,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 18:56:21] 2025-05-30 16:43:18,059 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 18:56:21] 2025-05-30 16:43:18,060 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 18:56:21] 2025-05-30 16:43:18,060 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 18:56:21] 2025-05-30 16:43:18,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 18:56:21] 2025-05-30 16:43:18,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 18:56:21] 2025-05-30 16:43:18,157 | INFO     | all payload control threads have been joined
[2025-05-30 18:56:21] 2025-05-30 16:43:18,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 18:56:21] 2025-05-30 16:43:18,184 | INFO     | aborting loop
[2025-05-30 18:56:21] 2025-05-30 16:43:18,717 | INFO     | all data control threads have been joined
[2025-05-30 18:56:21] 2025-05-30 16:43:18,952 | INFO     | all job control threads have been joined
[2025-05-30 18:56:21] 2025-05-30 16:43:19,064 | INFO     | [job] retrieve thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,132 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,163 | INFO     | [payload] control thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,190 | INFO     | [job] job monitor thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,438 | INFO     | [data] copytool_in thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,538 | INFO     | [payload] validate_post thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,725 | INFO     | [data] control thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,958 | INFO     | [job] control thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,968 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:19,990 | INFO     | [payload] failed_post thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:20,067 | INFO     | [data] copytool_out thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:20,103 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:20,231 | INFO     | [job] validate thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:20,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 18:56:21] 2025-05-30 16:43:21,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 18:56:21] 2025-05-30 16:43:21,794 | INFO     | [job] queue monitor thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:25,516 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 18:56:21] 2025-05-30 16:43:27,168 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864676403008)>', '<ExcThread(monitor, started 139864242636544)>']
[2025-05-30 18:56:21] 2025-05-30 16:43:28,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 18:56:21] 2025-05-30 16:43:28,119 | INFO     | [monitor] control thread has ended
[2025-05-30 18:56:21] 2025-05-30 16:43:32,194 | INFO     | all workflow threads have been joined
[2025-05-30 18:56:21] 2025-05-30 16:43:32,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 18:56:21] 2025-05-30 16:43:32,195 | INFO     | traces error code: 0
[2025-05-30 18:56:21] 2025-05-30 16:43:32,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 18:56:21] 2025-05-30 16:43:32,652 [wrapper] ==== pilot stdout END ====
[2025-05-30 18:56:21] 2025-05-30 16:43:32,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 18:56:21] 2025-05-30 16:43:32,934 [wrapper] pilotpid: 1207
[2025-05-30 18:56:21] 2025-05-30 16:43:33,095 [wrapper] Pilot exit status: 0
[2025-05-30 18:56:21] 2025-05-30 16:43:33,645 [wrapper] pandaids: 6669443654
[2025-05-30 18:56:21] 2025-05-30 16:43:34,448 [wrapper] cleanup supervisor_pilot 13005 1208
[2025-05-30 18:56:21] 2025-05-30 16:43:34,553 [wrapper] Test setup, not cleaning
[2025-05-30 18:56:21] 2025-05-30 16:43:34,644 [wrapper] apfmon messages muted
[2025-05-30 18:56:21] 2025-05-30 16:43:34,746 [wrapper] ==== wrapper stdout END ====
[2025-05-30 18:56:21] 2025-05-30 16:43:34,856 [wrapper] ==== wrapper stderr END ====
[2025-05-30 18:56:21]  *** Error codes and diagnostics ***
[2025-05-30 18:56:21]     "exeErrorCode": 0,
[2025-05-30 18:56:21]     "exeErrorDiag": "",
[2025-05-30 18:56:21]     "pilotErrorCode": 0,
[2025-05-30 18:56:21]     "pilotErrorDiag": "",
[2025-05-30 18:56:21]  *** Listing of results directory ***
[2025-05-30 18:56:21] total 414516
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc      5111 May 29 09:00 queuedata.json
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc    495897 May 29 09:00 pilot3.tar.gz
[2025-05-30 18:56:21] -rwx------. 1 boinc boinc     37140 May 29 09:02 runpilot2-wrapper.sh
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc       100 May 30 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 18:56:21] -rwxr-xr-x. 1 boinc boinc      7986 May 30 13:22 run_atlas
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc       105 May 30 13:22 job.xml
[2025-05-30 18:56:21] -rw-r--r--. 2 boinc boinc 223401875 May 30 13:22 EVNT.44871834._003804.pool.root.1
[2025-05-30 18:56:21] -rw-r--r--. 2 boinc boinc    508871 May 30 13:22 input.tar.gz
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc      6372 May 30 13:22 init_data.xml
[2025-05-30 18:56:21] -rw-r--r--. 2 boinc boinc     15093 May 30 13:22 start_atlas.sh
[2025-05-30 18:56:21] drwxrwx--x. 2 boinc boinc        68 May 30 13:22 shared
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc         0 May 30 13:22 boinc_lockfile
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc      2558 May 30 13:23 pandaJob.out
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc    992136 May 30 13:26 agis_schedconf.cvmfs.json
[2025-05-30 18:56:21] drwx------. 4 boinc boinc      4096 May 30 13:26 pilot3
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc 193138312 May 30 18:40 HITS.44871837._096532.pool.root.1
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc       531 May 30 18:41 boinc_task_state.xml
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc      1013 May 30 18:41 memory_monitor_summary.json
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc   1603667 May 30 18:41 agis_ddmendpoints.agis.ALL.json
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc    437783 May 30 18:41 log.44871837._096532.job.log.tgz.1
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc        95 May 30 18:42 pilot_heartbeat.json
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc      7691 May 30 18:43 heartbeat.json
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc      4540 May 30 18:43 pilotlog.txt
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc   1606555 May 30 18:43 log.44871837._096532.job.log.1
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc       357 May 30 18:43 output.list
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc       620 May 30 18:43 runtime_log
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc   2068480 May 30 18:43 result.tar.gz
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc      8673 May 30 18:43 runtime_log.err
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc       657 May 30 18:43 BJFKDmpSme7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm41dKDmX3yGnn.diag
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc      8192 May 30 18:56 boinc_mmap_file
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc        28 May 30 18:56 wrapper_checkpoint.txt
[2025-05-30 18:56:21] -rw-r--r--. 1 boinc boinc     20496 May 30 18:56 stderr.txt
[2025-05-30 18:56:21] HITS file was successfully produced:
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc 193138312 May 30 18:40 shared/HITS.pool.root.1
[2025-05-30 18:56:21]  *** Contents of shared directory: ***
[2025-05-30 18:56:21] total 409316
[2025-05-30 18:56:21] -rw-r--r--. 2 boinc boinc 223401875 May 30 13:22 ATLAS.root_0
[2025-05-30 18:56:21] -rw-r--r--. 2 boinc boinc    508871 May 30 13:22 input.tar.gz
[2025-05-30 18:56:21] -rw-r--r--. 2 boinc boinc     15093 May 30 13:22 start_atlas.sh
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc 193138312 May 30 18:40 HITS.pool.root.1
[2025-05-30 18:56:21] -rw-------. 1 boinc boinc   2068480 May 30 18:43 result.tar.gz
18:56:22 (27441): run_atlas exited; CPU time 69978.438138
18:56:22 (27441): called boinc_finish(0)

</stderr_txt>
]]>

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