Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:05 (3485206): wrapper (7.7.26015): starting
05:29:05 (3485206): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 05:29:05] Arguments: --nthreads 4
[2025-06-04 05:29:05] Threads: 4
[2025-06-04 05:29:05] Checking for CVMFS
[2025-06-04 05:29:05] No cvmfs_config command found, will try listing directly
[2025-06-04 05:29:05] CVMFS is ok
[2025-06-04 05:29:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:29:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:29:05] Further information can be found at the LHC@home message board.
[2025-06-04 05:29:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:29:05] Checking for apptainer binary...
[2025-06-04 05:29:05] which: no apptainer in ((null))
[2025-06-04 05:29:05] apptainer is not installed, using version from CVMFS
[2025-06-04 05:29:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:29:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-04 05:29:05] apptainer works
[2025-06-04 05:29:05] Set ATHENA_PROC_NUMBER=4
[2025-06-04 05:29:05] Set ATHENA_CORE_NUMBER=4
[2025-06-04 05:29:05] Starting ATLAS job with PandaID=6670811251
[2025-06-04 05:29:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:35:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:35:24] 2025-06-04 07:34:49,057 | INFO     | executing command: lscpu
[2025-06-04 09:35:24] 2025-06-04 07:34:49,126 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:35:24] 2025-06-04 07:34:50,747 | INFO     | PID=3488911 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 09:35:24] 2025-06-04 07:34:50,747 | INFO     | .. there are 7 such processes running
[2025-06-04 09:35:24] 2025-06-04 07:34:51,153 | INFO     | monitor loop #1066: job 0:6670811251 is in state 'finished'
[2025-06-04 09:35:24] 2025-06-04 07:34:51,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,657 | INFO     | monitor loop #1067: job 0:6670811251 is in state 'finished'
[2025-06-04 09:35:24] 2025-06-04 07:34:53,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,946 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:35:24] 2025-06-04 07:34:53,947 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6670811251/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,948 | INFO     | extracted standard info from prmon json
[2025-06-04 09:35:24] 2025-06-04 07:34:53,948 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:35:24] 2025-06-04 07:34:53,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:35:24] 2025-06-04 07:34:53,949 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:35:24] 2025-06-04 07:34:53,949 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:35:24] 2025-06-04 07:34:53,954 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:35:24] 2025-06-04 07:34:53,955 | INFO     | sum of square deviations: 4340323240.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,957 | INFO     | sum of deviations: -2952972911.999992
[2025-06-04 09:35:24] 2025-06-04 07:34:53,957 | INFO     | mean x: 1749015106.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,957 | INFO     | mean y: 2344201.738589212
[2025-06-04 09:35:24] 2025-06-04 07:34:53,957 | INFO     | -- intersect: 1192300328.300443
[2025-06-04 09:35:24] 2025-06-04 07:34:53,957 | INFO     | intersect: 1192300328.300443
[2025-06-04 09:35:24] 2025-06-04 07:34:53,958 | INFO     | chi2: 1.8192666537242428
[2025-06-04 09:35:24] 2025-06-04 07:34:53,958 | INFO     | sum of square deviations: 4075741535.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,960 | INFO     | sum of deviations: -3024739198.5
[2025-06-04 09:35:24] 2025-06-04 07:34:53,960 | INFO     | mean x: 1749014953.5
[2025-06-04 09:35:24] 2025-06-04 07:34:53,960 | INFO     | mean y: 2344160.75
[2025-06-04 09:35:24] 2025-06-04 07:34:53,960 | INFO     | -- intersect: 1300344547.4732726
[2025-06-04 09:35:24] 2025-06-04 07:34:53,960 | INFO     | intersect: 1300344547.4732726
[2025-06-04 09:35:24] 2025-06-04 07:34:53,961 | INFO     | chi2: 1.8187799097689745
[2025-06-04 09:35:24] 2025-06-04 07:34:53,961 | INFO     | current chi2=1.8187799097689745 (change=0.026754953941020444 %)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,961 | INFO     | right removable region: 235
[2025-06-04 09:35:24] 2025-06-04 07:34:53,961 | INFO     | sum of square deviations: 4075741535.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,963 | INFO     | sum of deviations: -37044629762.49999
[2025-06-04 09:35:24] 2025-06-04 07:34:53,963 | INFO     | mean x: 1749015258.5
[2025-06-04 09:35:24] 2025-06-04 07:34:53,963 | INFO     | mean y: 2363656.5127118644
[2025-06-04 09:35:24] 2025-06-04 07:34:53,964 | INFO     | -- intersect: 15899255582.486061
[2025-06-04 09:35:24] 2025-06-04 07:34:53,964 | INFO     | intersect: 15899255582.486061
[2025-06-04 09:35:24] 2025-06-04 07:34:53,964 | INFO     | chi2: 0.3393711114582078
[2025-06-04 09:35:24] 2025-06-04 07:34:53,964 | INFO     | current chi2=0.3393711114582078 (change=81.34571912460017 %)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,965 | INFO     | sum of square deviations: 3822136780.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,966 | INFO     | sum of deviations: -28289604854.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,966 | INFO     | mean x: 1749015411.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,966 | INFO     | mean y: 2358375.6103896103
[2025-06-04 09:35:24] 2025-06-04 07:34:53,967 | INFO     | -- intersect: 12947723156.811758
[2025-06-04 09:35:24] 2025-06-04 07:34:53,967 | INFO     | intersect: 12947723156.811758
[2025-06-04 09:35:24] 2025-06-04 07:34:53,967 | INFO     | chi2: 0.30823075932862753
[2025-06-04 09:35:24] 2025-06-04 07:34:53,967 | INFO     | current chi2=0.30823075932862753 (change=9.17589950298851 %)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,967 | INFO     | left removable region: 20
[2025-06-04 09:35:24] 2025-06-04 07:34:53,968 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,969 | INFO     | sum of deviations: -3076782355.000001
[2025-06-04 09:35:24] 2025-06-04 07:34:53,969 | INFO     | mean x: 1749015533.0
[2025-06-04 09:35:24] 2025-06-04 07:34:53,969 | INFO     | mean y: 2341971.2744186046
[2025-06-04 09:35:24] 2025-06-04 07:34:53,969 | INFO     | -- intersect: 1748590424.1299858
[2025-06-04 09:35:24] 2025-06-04 07:34:53,970 | INFO     | intersect: 1748590424.1299858
[2025-06-04 09:35:24] 2025-06-04 07:34:53,970 | INFO     | chi2: 0.11341261916574737
[2025-06-04 09:35:24] 2025-06-04 07:34:53,970 | INFO     | -- intersect: 1748590424.1299858
[2025-06-04 09:35:24] 2025-06-04 07:34:53,970 | INFO     | current memory leak: -1.00 B/s (using 215 data points, chi2=0.11)
[2025-06-04 09:35:24] 2025-06-04 07:34:53,971 | INFO     | ..............................
[2025-06-04 09:35:24] 2025-06-04 07:34:53,971 | INFO     | . Timing measurements:
[2025-06-04 09:35:24] 2025-06-04 07:34:53,971 | INFO     | . get job = 0 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,971 | INFO     | . initial setup = 1 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,971 | INFO     | . payload setup = 7 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,971 | INFO     | . stage-in = 0 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,972 | INFO     | . payload execution = 14698 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,972 | INFO     | . stage-out = 1 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,972 | INFO     | . log creation = 0 s
[2025-06-04 09:35:24] 2025-06-04 07:34:53,972 | INFO     | ..............................
[2025-06-04 09:35:24] 2025-06-04 07:34:54,369 | INFO     | 
[2025-06-04 09:35:24] 2025-06-04 07:34:54,369 | INFO     | job summary report
[2025-06-04 09:35:24] 2025-06-04 07:34:54,369 | INFO     | --------------------------------------------------
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | PanDA job id: 6670811251
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | task id: 44871837
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | errors: (none)
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | pilot state: finished 
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | transexitcode: 0
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | exeerrorcode: 0
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | exeerrordiag: 
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | exitcode: 0
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | exitmsg: OK
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | cpuconsumptiontime: 56659 s
[2025-06-04 09:35:24] 2025-06-04 07:34:54,370 | INFO     | nevents: 400
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | neventsw: 0
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | pid: 3496049
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | pgrp: 3496049
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | corecount: 4
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | event service: False
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | sizes: {0: 2404915, 1: 2405170, 6: 2405376, 12: 2405404, 14710: 2436016, 14711: 2444979, 14713: 2445163, 14721: 2445333}
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | --------------------------------------------------
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | 
[2025-06-04 09:35:24] 2025-06-04 07:34:54,371 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-04 09:35:24] 2025-06-04 07:34:54,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | job 6670811251 has completed (purged errors)
[2025-06-04 09:35:24] 2025-06-04 07:34:54,397 | INFO     | overall cleanup function is called
[2025-06-04 09:35:24] 2025-06-04 07:34:55,405 | INFO     | --- collectZombieJob: --- 10, [3496049]
[2025-06-04 09:35:24] 2025-06-04 07:34:55,405 | INFO     | zombie collector waiting for pid 3496049
[2025-06-04 09:35:24] 2025-06-04 07:34:55,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:35:24] 2025-06-04 07:34:55,405 | INFO     | collected zombie processes
[2025-06-04 09:35:24] 2025-06-04 07:34:55,406 | INFO     | will attempt to kill all subprocesses of pid=3496049
[2025-06-04 09:35:24] 2025-06-04 07:34:55,750 | INFO     | process IDs to be killed: [3496049] (in reverse order)
[2025-06-04 09:35:24] 2025-06-04 07:34:55,871 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:35:24] 2025-06-04 07:34:55,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:35:24] 2025-06-04 07:34:55,885 | INFO     | did not find any defunct processes belonging to 3496049
[2025-06-04 09:35:24] 2025-06-04 07:34:55,898 | INFO     | did not find any defunct processes belonging to 3496049
[2025-06-04 09:35:24] 2025-06-04 07:34:55,898 | INFO     | ready for new job
[2025-06-04 09:35:24] 2025-06-04 07:34:55,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:35:24] 2025-06-04 07:34:55,901 | INFO     | **************************************
[2025-06-04 09:35:24] 2025-06-04 07:34:55,902 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:35:24] 2025-06-04 07:34:55,902 | INFO     | **************************************
[2025-06-04 09:35:24] 2025-06-04 07:34:55,902 | INFO     | 
[2025-06-04 09:35:24] 2025-06-04 07:34:55,908 | INFO     | architecture information:
[2025-06-04 09:35:24] 2025-06-04 07:34:55,909 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:35:24] 2025-06-04 07:34:55,929 | INFO     | cat /etc/os-release:
[2025-06-04 09:35:24] NAME="CentOS Linux"
[2025-06-04 09:35:24] VERSION="7 (Core)"
[2025-06-04 09:35:24] ID="centos"
[2025-06-04 09:35:24] ID_LIKE="rhel fedora"
[2025-06-04 09:35:24] VERSION_ID="7"
[2025-06-04 09:35:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:35:24] ANSI_COLOR="0;31"
[2025-06-04 09:35:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:35:24] HOME_URL="https://www.centos.org/"
[2025-06-04 09:35:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:35:24] 
[2025-06-04 09:35:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:35:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:35:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:35:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:35:24] 
[2025-06-04 09:35:24] 2025-06-04 07:34:55,929 | INFO     | **************************************
[2025-06-04 09:35:24] 2025-06-04 07:34:56,432 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-04 09:35:24] 2025-06-04 07:34:56,453 | INFO     | sufficient remaining disk space (641227292672 B)
[2025-06-04 09:35:24] 2025-06-04 07:34:56,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:35:24] 2025-06-04 07:34:56,454 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:35:24] 2025-06-04 07:34:56,454 | INFO     | update_server=False
[2025-06-04 09:35:24] 2025-06-04 07:34:56,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:35:24] 2025-06-04 07:34:56,763 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:35:24] 2025-06-04 07:34:56,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:35:24] 2025-06-04 07:34:56,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:35:24] 2025-06-04 07:34:56,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:35:24] 2025-06-04 07:34:56,806 | INFO     | all data control threads have been joined
[2025-06-04 09:35:24] 2025-06-04 07:34:56,806 | INFO     | all job control threads have been joined
[2025-06-04 09:35:24] 2025-06-04 07:34:57,165 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:35:24] 2025-06-04 07:34:57,165 | INFO     | aborting loop
[2025-06-04 09:35:24] 2025-06-04 07:34:57,210 | INFO     | all payload control threads have been joined
[2025-06-04 09:35:24] 2025-06-04 07:34:57,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:35:24] 2025-06-04 07:34:57,459 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:57,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:57,812 | INFO     | [data] control thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:57,812 | INFO     | [job] control thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:57,866 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,171 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,174 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,215 | INFO     | [payload] control thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,391 | INFO     | [job] validate thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,526 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,585 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,695 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:58,768 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:34:59,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:35:24] 2025-06-04 07:34:59,313 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:35:00,099 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:35:00,788 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:35:24] 2025-06-04 07:35:01,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22865097889600)>', '<ExcThread(monitor, started 22864516327168)>']
[2025-06-04 09:35:24] 2025-06-04 07:35:02,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:35:24] 2025-06-04 07:35:02,794 | INFO     | [monitor] control thread has ended
[2025-06-04 09:35:24] 2025-06-04 07:35:07,011 | INFO     | all workflow threads have been joined
[2025-06-04 09:35:24] 2025-06-04 07:35:07,011 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:35:24] 2025-06-04 07:35:07,011 | INFO     | traces error code: 0
[2025-06-04 09:35:24] 2025-06-04 07:35:07,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:35:24] 2025-06-04 07:35:07,164 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:35:24] 2025-06-04 07:35:07,167 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:35:24] 2025-06-04 07:35:07,171 [wrapper] pilotpid: 3488911
[2025-06-04 09:35:24] 2025-06-04 07:35:07,174 [wrapper] Pilot exit status: 0
[2025-06-04 09:35:24] 2025-06-04 07:35:07,186 [wrapper] pandaids: 6670811251
[2025-06-04 09:35:24] 2025-06-04 07:35:07,271 [wrapper] cleanup supervisor_pilot 3844764 3488912
[2025-06-04 09:35:24] 2025-06-04 07:35:07,274 [wrapper] Test setup, not cleaning
[2025-06-04 09:35:24] 2025-06-04 07:35:07,277 [wrapper] apfmon messages muted
[2025-06-04 09:35:24] 2025-06-04 07:35:07,281 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:35:24] 2025-06-04 07:35:07,284 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:35:24]  *** Error codes and diagnostics ***
[2025-06-04 09:35:24]     "exeErrorCode": 0,
[2025-06-04 09:35:24]     "exeErrorDiag": "",
[2025-06-04 09:35:24]     "pilotErrorCode": 0,
[2025-06-04 09:35:24]     "pilotErrorDiag": "",
[2025-06-04 09:35:24]  *** Listing of results directory ***
[2025-06-04 09:35:24] total 422028
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc    495897 May 29 12:07 pilot3.tar.gz
[2025-06-04 09:35:24] -rwx------ 1 boinc boinc     37140 May 29 12:33 runpilot2-wrapper.sh
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc      5111 May 29 12:33 queuedata.json
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc       100 Jun  4 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:35:24] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 05:28 run_atlas
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc       105 Jun  4 05:28 job.xml
[2025-06-04 09:35:24] -rw-r--r-- 2 boinc boinc 225364213 Jun  4 05:29 EVNT.44871834._001148.pool.root.1
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc      6636 Jun  4 05:29 init_data.xml
[2025-06-04 09:35:24] drwxrwx--x 2 boinc boinc      4096 Jun  4 05:29 shared
[2025-06-04 09:35:24] -rw-r--r-- 2 boinc boinc    508876 Jun  4 05:29 input.tar.gz
[2025-06-04 09:35:24] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:29 start_atlas.sh
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc         0 Jun  4 05:29 boinc_lockfile
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc      2557 Jun  4 05:29 pandaJob.out
[2025-06-04 09:35:24] -rw------- 1 boinc boinc    986077 Jun  4 05:29 agis_schedconf.cvmfs.json
[2025-06-04 09:35:24] drwx------ 4 boinc boinc      4096 Jun  4 05:29 pilot3
[2025-06-04 09:35:24] -rw------- 1 boinc boinc 199570184 Jun  4 09:34 HITS.44871837._098937.pool.root.1
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc       528 Jun  4 09:34 boinc_task_state.xml
[2025-06-04 09:35:24] -rw------- 1 boinc boinc      1036 Jun  4 09:34 memory_monitor_summary.json
[2025-06-04 09:35:24] -rw------- 1 boinc boinc   1603667 Jun  4 09:34 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:35:24] -rw------- 1 boinc boinc    327924 Jun  4 09:34 log.44871837._098937.job.log.tgz.1
[2025-06-04 09:35:24] -rw------- 1 boinc boinc        95 Jun  4 09:34 pilot_heartbeat.json
[2025-06-04 09:35:24] -rw------- 1 boinc boinc      7722 Jun  4 09:34 heartbeat.json
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc        26 Jun  4 09:34 wrapper_checkpoint.txt
[2025-06-04 09:35:24] -rw------- 1 boinc boinc      4363 Jun  4 09:35 pilotlog.txt
[2025-06-04 09:35:24] -rw------- 1 boinc boinc   1362359 Jun  4 09:35 log.44871837._098937.job.log.1
[2025-06-04 09:35:24] -rw------- 1 boinc boinc       357 Jun  4 09:35 output.list
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc       620 Jun  4 09:35 runtime_log
[2025-06-04 09:35:24] -rw------- 1 boinc boinc   1710080 Jun  4 09:35 result.tar.gz
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc      9026 Jun  4 09:35 runtime_log.err
[2025-06-04 09:35:24] -rw------- 1 boinc boinc       666 Jun  4 09:35 gGHODmrkpe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgLeKDmvgra9m.diag
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc      8192 Jun  4 09:35 boinc_mmap_file
[2025-06-04 09:35:24] -rw-r--r-- 1 boinc boinc     21002 Jun  4 09:35 stderr.txt
[2025-06-04 09:35:24] HITS file was successfully produced:
[2025-06-04 09:35:24] -rw------- 1 boinc boinc 199570184 Jun  4 09:34 shared/HITS.pool.root.1
[2025-06-04 09:35:24]  *** Contents of shared directory: ***
[2025-06-04 09:35:24] total 417176
[2025-06-04 09:35:24] -rw-r--r-- 2 boinc boinc 225364213 Jun  4 05:29 ATLAS.root_0
[2025-06-04 09:35:24] -rw-r--r-- 2 boinc boinc    508876 Jun  4 05:29 input.tar.gz
[2025-06-04 09:35:24] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:29 start_atlas.sh
[2025-06-04 09:35:24] -rw------- 1 boinc boinc 199570184 Jun  4 09:34 HITS.pool.root.1
[2025-06-04 09:35:24] -rw------- 1 boinc boinc   1710080 Jun  4 09:35 result.tar.gz
09:35:26 (3485206): run_atlas exited; CPU time 57326.610652
09:35:26 (3485206): called boinc_finish(0)

</stderr_txt>
]]>

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