Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
18:35:01 (2516230): wrapper (7.7.26015): starting
18:35:01 (2516230): wrapper: running run_atlas (--nthreads 12)
[2025-05-29 18:35:01] Arguments: --nthreads 12
[2025-05-29 18:35:01] Threads: 12
[2025-05-29 18:35:01] Checking for CVMFS
[2025-05-29 18:35:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 18:35:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 18:35:03] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 18:35:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 18:35:05] 2.12.7.0 39975 7852 181752 146572 2 187 3599351 4096001 16526 130560 0 80393442 99.999 1954296 1126 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-05-29 18:35:05] CVMFS is ok
[2025-05-29 18:35:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 18:35:05] Checking for apptainer binary...
[2025-05-29 18:35:05] apptainer is not installed, using version from CVMFS
[2025-05-29 18:35:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 18:35:06] epyc7v12
[2025-05-29 18:35:06] apptainer works
[2025-05-29 18:35:06] Set ATHENA_PROC_NUMBER=12
[2025-05-29 18:35:06] Set ATHENA_CORE_NUMBER=12
[2025-05-29 18:35:06] Starting ATLAS job with PandaID=6670046495
[2025-05-29 18:35:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 23:35:32] Job failed
[2025-05-29 23:35:32] ++ pwd
[2025-05-29 23:35:32] + export RUNTIME_CONFIG_DIR=/opt/boinc/instance_homes/boinc_31417/slots/15/
[2025-05-29 23:35:32] + RUNTIME_CONFIG_DIR=/opt/boinc/instance_homes/boinc_31417/slots/15/
[2025-05-29 23:35:32] + mv ATLAS.root_0 EVNT.44871834._001952.pool.root.1
[2025-05-29 23:35:32] + tar --strip-components=5 -xvf input.tar.gz
[2025-05-29 23:35:32] + umask 077
[2025-05-29 23:35:32] ++ date +%s
[2025-05-29 23:35:32] + ACCOUNTING_STARTTIME=1748543708
[2025-05-29 23:35:32] + echo 'Detecting resource accounting method available for the job.'
[2025-05-29 23:35:32] Detecting resource accounting method available for the job.
[2025-05-29 23:35:32] + JOB_ACCOUNTING=
[2025-05-29 23:35:32] + command -v arc-job-cgroup
[2025-05-29 23:35:32] + '[' -z '' ']'
[2025-05-29 23:35:32] + GNU_TIME=/usr/bin/time
[2025-05-29 23:35:32] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-05-29 23:35:32] Looking for /usr/bin/time tool for accounting measurements
[2025-05-29 23:35:32] + '[' '!' -z /usr/bin/time ']'
[2025-05-29 23:35:32] + /usr/bin/time --version
[2025-05-29 23:35:32] + echo 'GNU time found and will be used for job accounting.'
[2025-05-29 23:35:32] GNU time found and will be used for job accounting.
[2025-05-29 23:35:32] + JOB_ACCOUNTING=gnutime
[2025-05-29 23:35:32] + '[' -z gnutime ']'
[2025-05-29 23:35:32] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-29 23:35:32] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-29 23:35:32] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-29/BOINC_MCORE/6670046495.out
[2025-05-29 23:35:32] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-29/BOINC_MCORE/6670046495.out
[2025-05-29 23:35:32] + export PILOT_NOKILL=YES
[2025-05-29 23:35:32] + PILOT_NOKILL=YES
[2025-05-29 23:35:32] + export GRID_GLOBAL_JOBID=EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m
[2025-05-29 23:35:32] + GRID_GLOBAL_JOBID=EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m
[2025-05-29 23:35:32] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m
[2025-05-29 23:35:32] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m
[2025-05-29 23:35:32] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-29 23:35:32] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-29 23:35:32] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-05-29 23:35:32] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-05-29 23:35:32] ++ pwd
[2025-05-29 23:35:32] + RUNTIME_JOB_DIR=/opt/boinc/instance_homes/boinc_31417/slots/15
[2025-05-29 23:35:32] + RUNTIME_JOB_STDIN=/dev/null
[2025-05-29 23:35:32] ++ pwd
[2025-05-29 23:35:32] + RUNTIME_JOB_STDOUT=/opt/boinc/instance_homes/boinc_31417/slots/15/log.44871837._098346.job.log.1
[2025-05-29 23:35:32] ++ pwd
[2025-05-29 23:35:32] + RUNTIME_JOB_STDERR=/opt/boinc/instance_homes/boinc_31417/slots/15/log.44871837._098346.job.log.1
[2025-05-29 23:35:32] ++ pwd
[2025-05-29 23:35:32] + RUNTIME_JOB_DIAG=/opt/boinc/instance_homes/boinc_31417/slots/15.diag
[2025-05-29 23:35:32] + '[' '!' -z '' ']'
[2025-05-29 23:35:32] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-05-29 23:35:32] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-05-29 23:35:32] + RUNTIME_FRONTEND_SEES_NODE=
[2025-05-29 23:35:32] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-05-29 23:35:32] + '[' '!' -z '' ']'
[2025-05-29 23:35:32] + '[' -z yes ']'
[2025-05-29 23:35:32] ++ pwd
[2025-05-29 23:35:32] + RUNTIME_JOB_DIAG=/opt/boinc/instance_homes/boinc_31417/slots/15/EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m.diag
[2025-05-29 23:35:32] + runtimeenvironments=
[2025-05-29 23:35:32] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-29 23:35:32] + RTE_function_0 1
[2025-05-29 23:35:32] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 23:35:32] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 23:35:32] + export BOINC_APP=ATLAS
[2025-05-29 23:35:32] + BOINC_APP=ATLAS
[2025-05-29 23:35:32] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 23:35:32] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 23:35:32] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 23:35:32] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 23:35:32] + '[' -z 1 ']'
[2025-05-29 23:35:32] + '[' 1 == 1 ']'
[2025-05-29 23:35:32] + shift
[2025-05-29 23:35:32] + export ATLAS_LOCAL_AREA=/opt/boinc/instance_homes/boinc_31417/slots/15/
[2025-05-29 23:35:32] + ATLAS_LOCAL_AREA=/opt/boinc/instance_homes/boinc_31417/slots/15/
[2025-05-29 23:35:32] + '[' 0 -ne 0 ']'
[2025-05-29 23:35:32] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-05-29 23:35:32] + '[' -f /etc/os-release ']'
[2025-05-29 23:35:32] +++ cat /etc/os-release
[2025-05-29 23:35:32] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-05-29 23:35:32] +++ NAME='CentOS Linux'
[2025-05-29 23:35:32] +++ VERSION='7 (Core)'
[2025-05-29 23:35:32] +++ ID=centos
[2025-05-29 23:35:32] +++ ID_LIKE='rhel fedora'
[2025-05-29 23:35:32] +++ VERSION_ID=7
[2025-05-29 23:35:32] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-05-29 23:35:32] +++ ANSI_COLOR='0;31'
[2025-05-29 23:35:32] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-05-29 23:35:32] +++ HOME_URL=https://www.centos.org/
[2025-05-29 23:35:32] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-05-29 23:35:32] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-05-29 23:35:32] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-05-29 23:35:32] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-05-29 23:35:32] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-05-29 23:35:32] ++ echo 'CentOS Linux 7 (Core)'
[2025-05-29 23:35:32] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-05-29 23:35:32] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-05-29 23:35:32] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-05-29 23:35:32] + HOME=/opt/boinc/instance_homes/boinc_31417/slots/15
[2025-05-29 23:35:32] + export HOME
[2025-05-29 23:35:32] + cd /opt/boinc/instance_homes/boinc_31417/slots/15
[2025-05-29 23:35:32] + '[' '!' -z '' ']'
[2025-05-29 23:35:32] + '[' -z '' ']'
[2025-05-29 23:35:32] ++ /bin/hostname -f
[2025-05-29 23:35:32] + nodename=epyc7v12
[2025-05-29 23:35:32] + echo nodename=epyc7v12
[2025-05-29 23:35:32] + echo Processors=2
[2025-05-29 23:35:32] + echo Nodecount=1
[2025-05-29 23:35:32] + echo Benchmark=HEPSPEC:1.0
[2025-05-29 23:35:32] + executable=./runpilot2-wrapper.sh
[2025-05-29 23:35:32] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-05-29 23:35:32] ++ head -n 1
[2025-05-29 23:35:32] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-05-29 23:35:32] ++ tr -d '\0'
[2025-05-29 23:35:32] + line1='#!/bin/bash'
[2025-05-29 23:35:32] ++ sed -n 's/^#! *//p'
[2025-05-29 23:35:32] ++ echo '#!/bin/bash'
[2025-05-29 23:35:32] + shebang=/bin/bash
[2025-05-29 23:35:32] ++ echo /bin/bash
[2025-05-29 23:35:32] ++ awk '{print $1}'
[2025-05-29 23:35:32] + interpreter=/bin/bash
[2025-05-29 23:35:32] + '[' /bin/bash = /usr/bin/env ']'
[2025-05-29 23:35:32] + '[' x/bin/bash = x ']'
[2025-05-29 23:35:32] + type /bin/bash
[2025-05-29 23:35:32] + '[' xgnutime = xgnutime ']'
[2025-05-29 23:35:32] + /usr/bin/time -o /opt/boinc/instance_homes/boinc_31417/slots/15/EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-05-29 23:35:32] + RESULT=1
[2025-05-29 23:35:32] + sed -i -e /nodename=/d /opt/boinc/instance_homes/boinc_31417/slots/15/EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m.diag
[2025-05-29 23:35:32] ++ grep domain_name init_data.xml
[2025-05-29 23:35:32] ++ awk -F '<' '{print $1}'
[2025-05-29 23:35:32] ++ sed -e 's# #_#g'
[2025-05-29 23:35:32] ++ awk -F '>' '{print $2}'
[2025-05-29 23:35:32] + hostname=epyc7v12_31417
[2025-05-29 23:35:32] ++ awk -F '>' '{print $2}'
[2025-05-29 23:35:32] ++ sed -e 's# #_#g'
[2025-05-29 23:35:32] ++ grep user_name init_data.xml
[2025-05-29 23:35:32] ++ awk -F '<' '{print $1}'
[2025-05-29 23:35:32] + username=Landjunge
[2025-05-29 23:35:32] + nodename=Landjunge@epyc7v12_31417
[2025-05-29 23:35:32] + echo nodename=Landjunge@epyc7v12_31417
[2025-05-29 23:35:32] + '[' -n 12 ']'
[2025-05-29 23:35:32] + sed -i -e s/Processors=1/Processors=12/ /opt/boinc/instance_homes/boinc_31417/slots/15/EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m.diag
[2025-05-29 23:35:32] + echo exitcode=1
[2025-05-29 23:35:32] + runtimeenvironments=
[2025-05-29 23:35:32] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-29 23:35:32] + RTE_function_0 2
[2025-05-29 23:35:32] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 23:35:32] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 23:35:32] + export BOINC_APP=ATLAS
[2025-05-29 23:35:32] + BOINC_APP=ATLAS
[2025-05-29 23:35:32] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 23:35:32] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 23:35:32] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 23:35:32] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 23:35:32] + '[' -z 2 ']'
[2025-05-29 23:35:32] + '[' 2 == 1 ']'
[2025-05-29 23:35:32] + '[' 0 -ne 0 ']'
[2025-05-29 23:35:32] + echo 'zip all output files'
[2025-05-29 23:35:32] + flist='*.diag '
[2025-05-29 23:35:32] + for f in ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 ./gmlog/
[2025-05-29 23:35:32] + '[' -e ./heartbeat.json ']'
[2025-05-29 23:35:32] + flist='*.diag  ./heartbeat.json'
[2025-05-29 23:35:32] + for f in ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 ./gmlog/
[2025-05-29 23:35:32] + '[' -e ./output.list ']'
[2025-05-29 23:35:32] + flist='*.diag  ./heartbeat.json ./output.list'
[2025-05-29 23:35:32] + for f in ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 ./gmlog/
[2025-05-29 23:35:32] + '[' -e ./log.44871837._098346.job.log.1 ']'
[2025-05-29 23:35:32] + flist='*.diag  ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1'
[2025-05-29 23:35:32] + for f in ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 ./gmlog/
[2025-05-29 23:35:32] + '[' -e ./log.44871837._098346.job.log.1 ']'
[2025-05-29 23:35:32] + flist='*.diag  ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1'
[2025-05-29 23:35:32] + for f in ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 ./gmlog/
[2025-05-29 23:35:32] + '[' -e ./gmlog/ ']'
[2025-05-29 23:35:32] + '[' -f output.list ']'
[2025-05-29 23:35:32] ++ awk '{print $1}' output.list
[2025-05-29 23:35:32] + ol=log.44871837._098346.job.log.tgz.1
[2025-05-29 23:35:32] + for i in '$ol'
[2025-05-29 23:35:32] + [[ -f log.44871837._098346.job.log.tgz.1 ]]
[2025-05-29 23:35:32] + [[ ! log.44871837._098346.job.log.tgz.1 =~ HITS.* ]]
[2025-05-29 23:35:32] + flist='*.diag  ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 log.44871837._098346.job.log.tgz.1'
[2025-05-29 23:35:32] + sed -i -e 's/HITS.* /HITS.pool.root.1 /' output.list
[2025-05-29 23:35:32] + tar cvf result.tar.gz EgrMDmskoe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHHeKDmqsQY7m.diag ./heartbeat.json ./output.list ./log.44871837._098346.job.log.1 ./log.44871837._098346.job.log.1 log.44871837._098346.job.log.tgz.1
[2025-05-29 23:35:32] + '[' xgnutime = xcgroup ']'
[2025-05-29 23:35:32] + '[' -n '' ']'
[2025-05-29 23:35:32] + '[' -n '' ']'
[2025-05-29 23:35:32] ++ date +%s
[2025-05-29 23:35:32] + ACCOUNTING_ENDTIME=1748561732
[2025-05-29 23:35:32] ++ date -d '1970-01-01 UTC 1748543708 seconds' +%Y%m%d%H%M%SZ
[2025-05-29 23:35:32] + echo LRMSStartTime=20250529183508Z
[2025-05-29 23:35:32] ++ date -d '1970-01-01 UTC 1748561732 seconds' +%Y%m%d%H%M%SZ
[2025-05-29 23:35:32] + echo LRMSEndTime=20250529233532Z
[2025-05-29 23:35:32] + echo walltime=18024
[2025-05-29 23:35:32] + echo exitcode=1
[2025-05-29 23:35:32] + exit 1
[2025-05-29 23:35:32] ./log.44871837._098346.job.log.1
[2025-05-29 23:35:32] ./pilotlog.txt
[2025-05-29 23:35:32] ./runtime_log.err
[2025-05-29 23:35:32] ./runtime_log
[2025-05-29 23:35:32] ./pilot3/pilot/util/realtimelogger.py
[2025-05-29 23:35:32] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-05-29 23:35:32] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-05-29 23:35:32] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-05-29 23:35:32] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-05-29 23:35:32] ./pilot3/pilot/util/loggingsupport.py
[2025-05-29 23:35:32] ./log.44871837._098346.job.log.tgz.1
23:45:33 (2516230): run_atlas exited; CPU time 1238.864667
23:45:33 (2516230): app exit status: 0x1
23:45:33 (2516230): called boinc_finish(195)

</stderr_txt>
]]>

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