Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-29 10:43:25 (11280): Detected: vboxwrapper 26206
2025-05-29 10:43:25 (11280): Detected: BOINC client v8.0.2
2025-05-29 10:43:26 (11280): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-29 10:43:26 (11280): Successfully copied 'init_data.xml' to the shared directory.
2025-05-29 10:43:27 (11280): Create VM. (boinc_093d3802d8cfc6a7, slot#0)
2025-05-29 10:43:27 (11280): Setting Memory Size for VM. (4400MB)
2025-05-29 10:43:27 (11280): Setting CPU Count for VM. (4)
2025-05-29 10:43:28 (11280): Setting Chipset Options for VM.
2025-05-29 10:43:28 (11280): Setting Graphics Controller Options for VM.
2025-05-29 10:43:28 (11280): Setting Boot Options for VM.
2025-05-29 10:43:28 (11280): Setting Network Configuration for NAT.
2025-05-29 10:43:29 (11280): Enabling VM Network Access.
2025-05-29 10:43:29 (11280): Disabling USB Support for VM.
2025-05-29 10:43:29 (11280): Disabling COM Port Support for VM.
2025-05-29 10:43:29 (11280): Disabling LPT Port Support for VM.
2025-05-29 10:43:30 (11280): Disabling Audio Support for VM.
2025-05-29 10:43:30 (11280): Disabling Clipboard Support for VM.
2025-05-29 10:43:30 (11280): Disabling Drag and Drop Support for VM.
2025-05-29 10:43:30 (11280): Adding storage controller(s) to VM.
2025-05-29 10:43:31 (11280): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-29 10:43:34 (11280): Adding VirtualBox Guest Additions to VM.
2025-05-29 10:43:34 (11280): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-29 10:43:34 (11280): forwarding host port 62857 to guest port 80
2025-05-29 10:43:35 (11280): Enabling remote desktop for VM.
2025-05-29 10:43:35 (11280): Required extension pack not installed, remote desktop not enabled.
2025-05-29 10:43:35 (11280): Enabling shared directory for VM.
2025-05-29 10:43:35 (11280): Starting VM using VBoxManage interface. (boinc_093d3802d8cfc6a7, slot#0)
2025-05-29 10:43:43 (11280): Successfully started VM. (PID = '1900')
2025-05-29 10:43:43 (11280): Reporting VM Process ID to BOINC.
2025-05-29 10:43:43 (11280): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-29 10:43:43 (11280): Guest Log: CPUID EDX: 0x178bfbff
2025-05-29 10:43:43 (11280): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-29 10:43:43 (11280): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-29 10:43:43 (11280): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-29 10:43:43 (11280): Detected: Web Application Enabled (http://localhost:62857)
2025-05-29 10:43:43 (11280): Preference change detected
2025-05-29 10:43:43 (11280): Setting CPU throttle for VM. (100%)
2025-05-29 10:43:44 (11280): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-29 10:43:45 (11280): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-29 10:43:45 (11280): Guest Log: BIOS: Booting from Hard Disk...
2025-05-29 10:43:48 (11280): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-29 10:43:48 (11280): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-29 10:43:48 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-29 10:43:56 (11280): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-29 10:43:56 (11280): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-29 10:44:05 (11280): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000225 main     Log opened 2025-05-29T10:44:03.750735000Z
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000414 main     OS Product: Linux
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000457 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000493 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000530 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000531 main     Process ID: 1319
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.000532 main     Package type: LINUX_64BITS_GENERIC
2025-05-29 10:44:05 (11280): Guest Log: 00:00:00.002643 main     5.2.32 r132073 started. Verbose level = 0
2025-05-29 10:44:05 (11280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-29 10:44:05 (11280): Guest Log: [INFO] Mounting shared directory
2025-05-29 10:44:05 (11280): Guest Log: [INFO] Checking for init_data.xml
2025-05-29 10:44:10 (11280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-29 10:44:10 (11280): Guest Log: [INFO] Detected branch: prod
2025-05-29 10:44:10 (11280): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-29 10:44:10 (11280): Guest Log: Copying input files
2025-05-29 10:44:12 (11280): Guest Log: Copied input files into RunAtlas.
2025-05-29 10:44:12 (11280): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-29 10:44:12 (11280): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-29 10:44:12 (11280): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-29 10:44:12 (11280): Guest Log: Further information can be found at the LHC@home message board.
2025-05-29 10:44:15 (11280): Guest Log: 00:00:10.006467 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 679 377 000ns (GuestNow=1 748 533 455 436 156 000 ns GuestLast=1 748 515 443 756 779 000 ns fSetTimeLastLoop=true )
2025-05-29 10:44:21 (11280): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-29 10:44:21 (11280): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-29 10:44:21 (11280): Guest Log: 2.6.3.0 1598 0 30136 146567 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-29 10:44:22 (11280): Guest Log: copied the webapp to /var/www
2025-05-29 10:44:22 (11280): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-29 10:44:22 (11280): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-29 10:44:23 (11280): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-29 10:44:23 (11280): Guest Log:  *** Starting ATLAS job. (PandaID=6669238816 taskID=44871837) ***
2025-05-29 12:30:09 (11280): Status Report: Elapsed Time: '6000.214525'
2025-05-29 12:30:09 (11280): Status Report: CPU Time: '22081.671875'
2025-05-29 14:16:46 (11280): Status Report: Elapsed Time: '12000.303211'
2025-05-29 14:16:46 (11280): Status Report: CPU Time: '47533.609375'
2025-05-29 16:03:28 (11280): Status Report: Elapsed Time: '18000.642088'
2025-05-29 16:03:28 (11280): Status Report: CPU Time: '72978.281250'
2025-05-29 17:50:54 (11280): Status Report: Elapsed Time: '24001.586693'
2025-05-29 17:50:54 (11280): Status Report: CPU Time: '98599.046875'
2025-05-29 17:57:28 (11280): Guest Log:  *** Job finished ***
2025-05-29 17:57:28 (11280): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:18,806 | INFO     | [payload] failed_post thread has finished
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:19,786 | INFO     | [data] copytool_out thread has finished
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:20,396 | INFO     | [data] queue_monitor thread has finished
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:22,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139969927849792)>', '<ExcThread(monitor, started 139968731137792)>']
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:22,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:22,400 | INFO     | [monitor] control thread has ended
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,435 | INFO     | all workflow threads have been joined
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,435 | INFO     | end of generic workflow (traces error code: 0)
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,435 | INFO     | traces error code: 0
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,559 [wrapper] ==== pilot stdout END ====
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,565 [wrapper] ==== wrapper stdout RESUME ====
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,570 [wrapper] pilotpid: 5909
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,576 [wrapper] Pilot exit status: 0
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,741 [wrapper] pandaids: 6669238816
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,785 [wrapper] cleanup supervisor_pilot 31874 5910
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,791 [wrapper] Test setup, not cleaning
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,797 [wrapper] apfmon messages muted
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,803 [wrapper] ==== wrapper stdout END ====
2025-05-29 17:57:28 (11280): Guest Log: 2025-05-29 22:57:27,809 [wrapper] ==== wrapper stderr END ====
2025-05-29 17:57:28 (11280): Guest Log:  *** Error codes and diagnostics ***
2025-05-29 17:57:28 (11280): Guest Log:     "exeErrorCode": 0,
2025-05-29 17:57:28 (11280): Guest Log:     "exeErrorDiag": "",
2025-05-29 17:57:28 (11280): Guest Log:     "pilotErrorCode": 0,
2025-05-29 17:57:28 (11280): Guest Log:     "pilotErrorDiag": "",
2025-05-29 17:57:28 (11280): Guest Log:  *** Listing of results directory ***
2025-05-29 17:57:28 (11280): Guest Log: total 204024
2025-05-29 17:57:28 (11280): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 29 04:58 pilot3.tar.gz
2025-05-29 17:57:28 (11280): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 29 05:25 queuedata.json
2025-05-29 17:57:28 (11280): Guest Log: -rwx------. 1 atlas atlas     37140 May 29 05:26 runpilot2-wrapper.sh
2025-05-29 17:57:28 (11280): Guest Log: -rwxr-xr-x. 1 atlas atlas      8185 May 29 15:44 init_data.xml
2025-05-29 17:57:28 (11280): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 May 29 15:44 input.tar.gz
2025-05-29 17:57:28 (11280): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 29 15:44 start_atlas.sh
2025-05-29 17:57:28 (11280): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 29 15:44 EVNT.44871834._003750.pool.root.1 -> /data/./ATLAS.root_0
2025-05-29 17:57:28 (11280): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 29 15:44 pandaJob.out
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas    992701 May 29 15:45 agis_schedconf.cvmfs.json
2025-05-29 17:57:28 (11280): Guest Log: drwx------. 4 atlas atlas      4096 May 29 15:46 pilot3
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas 200083562 May 29 22:56 HITS.44871837._095499.pool.root.1
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas        95 May 29 22:56 pilot_heartbeat.json
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas      1032 May 29 22:56 memory_monitor_summary.json
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas   1603667 May 29 22:56 agis_ddmendpoints.agis.ALL.json
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas    435647 May 29 22:56 log.44871837._095499.job.log.tgz.1
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas      7722 May 29 22:57 heartbeat.json
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas      4722 May 29 22:57 pilotlog.txt
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas   2094544 May 29 22:57 log.44871837._095499.job.log.1
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas       357 May 29 22:57 output.list
2025-05-29 17:57:28 (11280): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 29 22:57 runtime_log
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas   2549760 May 29 22:57 result.tar.gz
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas       661 May 29 22:57 WIALDmkxke7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbqdKDmxLMvvm.diag
2025-05-29 17:57:28 (11280): Guest Log: -rw-r--r--. 1 atlas atlas      8605 May 29 22:57 runtime_log.err
2025-05-29 17:57:28 (11280): Guest Log: Looking for outputfile HITS.44871837._095499.pool.root.1
2025-05-29 17:57:28 (11280): Guest Log: HITS file was successfully produced
2025-05-29 17:57:28 (11280): Guest Log: -rw-------. 1 atlas atlas 200083562 May 29 22:56 /home/atlas/RunAtlas/HITS.44871837._095499.pool.root.1
2025-05-29 17:57:29 (11280): Guest Log: Successfully finished the ATLAS job!
2025-05-29 17:57:29 (11280): Guest Log: Copying the results back to the shared directory!
2025-05-29 17:57:29 (11280): Guest Log:  *** Contents of shared directory: ***
2025-05-29 17:57:29 (11280): Guest Log: total 415164
2025-05-29 17:57:29 (11280): Guest Log: -rwxrwxrwx. 1 root root 221949981 May 29 15:43 ATLAS.root_0
2025-05-29 17:57:29 (11280): Guest Log: -rwxrwxrwx. 1 root root 200083562 May 29 22:57 HITS.pool.root.1
2025-05-29 17:57:29 (11280): Guest Log: -rwxrwxrwx. 1 root root      8185 May 29 15:43 init_data.xml
2025-05-29 17:57:29 (11280): Guest Log: -rwxrwxrwx. 1 root root    508880 May 29 15:42 input.tar.gz
2025-05-29 17:57:29 (11280): Guest Log: -rwxrwxrwx. 1 root root   2549760 May 29 22:57 result.tar.gz
2025-05-29 17:57:29 (11280): Guest Log: -rwxrwxrwx. 1 root root     15093 May 29 15:42 start_atlas.sh
2025-05-29 17:57:29 (11280): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-29 17:57:29 (11280): VM Completion File Detected.
2025-05-29 17:57:29 (11280): Powering off VM.
2025-05-29 17:57:30 (11280): Successfully stopped VM.
2025-05-29 17:57:30 (11280): Deregistering VM. (boinc_093d3802d8cfc6a7, slot#0)
2025-05-29 17:57:30 (11280): Removing network bandwidth throttle group from VM.
2025-05-29 17:57:31 (11280): Removing VM from VirtualBox.
17:57:36 (11280): called boinc_finish(0)

</stderr_txt>
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