Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:53:37 (2264279): wrapper (7.7.26015): starting
05:53:37 (2264279): wrapper: running run_atlas (--nthreads 3)
[2025-05-30 05:53:37] Arguments: --nthreads 3
[2025-05-30 05:53:37] Threads: 3
[2025-05-30 05:53:37] Checking for CVMFS
[2025-05-30 05:53:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 05:53:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 05:53:37] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 05:53:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 05:53:38] 2.9.2.0 50808 8626 85020 146586 1 56 9115762 36864000 0 130560 0 5860978 99.990 1976052 5292 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-05-30 05:53:38] CVMFS is ok
[2025-05-30 05:53:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-30 05:53:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-30 05:53:38] Further information can be found at the LHC@home message board.
[2025-05-30 05:53:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 05:53:38] Checking for apptainer binary...
[2025-05-30 05:53:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 05:53:38] Running /usr/bin/apptainer --version
[2025-05-30 05:53:38] apptainer version 1.3.6-6.1
[2025-05-30 05:53:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 05:53:38] cosA125
[2025-05-30 05:53:38] apptainer works
[2025-05-30 05:53:38] Set ATHENA_PROC_NUMBER=3
[2025-05-30 05:53:38] Set ATHENA_CORE_NUMBER=3
[2025-05-30 05:53:38] Starting ATLAS job with PandaID=6669622617
[2025-05-30 05:53:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 07:42:59]  *** The last 200 lines of the pilot log: ***
[2025-05-30 07:42:59] 2025-05-30 05:42:37,714 | INFO     | job 6669622617 has finished - writing final server update
[2025-05-30 07:42:59] 2025-05-30 05:42:37,714 | INFO     | total number of processed events: 400 (read)
[2025-05-30 07:42:59] 2025-05-30 05:42:37,715 | INFO     | executing command: lscpu
[2025-05-30 07:42:59] 2025-05-30 05:42:37,732 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-30 07:42:59] 2025-05-30 05:42:39,931 | INFO     | monitor loop #501: job 0:6669622617 is in state 'finished'
[2025-05-30 07:42:59] 2025-05-30 05:42:39,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,202 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-30 07:42:59] 2025-05-30 05:42:41,203 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6669622617/memory_monitor_summary.json (trf name=prmon)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,203 | INFO     | extracted standard info from prmon json
[2025-05-30 07:42:59] 2025-05-30 05:42:41,203 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 07:42:59] 2025-05-30 05:42:41,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 07:42:59] 2025-05-30 05:42:41,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 07:42:59] 2025-05-30 05:42:41,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | fitting pss+swap vs Time
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | sum of square deviations: 379832238.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | sum of deviations: -3585204971.999998
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | mean x: 1748580476.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | mean y: 2373323.831775701
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | -- intersect: 16507079321.160322
[2025-05-30 07:42:59] 2025-05-30 05:42:41,204 | INFO     | intersect: 16507079321.160322
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | chi2: 1.6753016333279138
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | sum of square deviations: 329031285.5
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | sum of deviations: -3095042765.999999
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | mean x: 1748580323.5
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | mean y: 2374796.2156862747
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | -- intersect: 16450448640.605824
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | intersect: 16450448640.605824
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | chi2: 1.6753861684673725
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | current chi2=1.6753861684673725 (change=-0.005045965322124928 %)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | right removable region: 101
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | sum of square deviations: 329031285.5
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | sum of deviations: -16045010682.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | mean x: 1748580628.5
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | mean y: 2409552.745098039
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | -- intersect: 85270881272.6502
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | intersect: 85270881272.6502
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | chi2: 0.20492929122176998
[2025-05-30 07:42:59] 2025-05-30 05:42:41,205 | INFO     | current chi2=0.20492929122176998 (change=87.76761825184359 %)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | sum of square deviations: 282974608.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | sum of deviations: -11144199921.999994
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | mean x: 1748580781.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | mean y: 2393299.432989691
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | -- intersect: 68865581911.8575
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | intersect: 68865581911.8575
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | chi2: 0.1788244480300584
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | current chi2=0.1788244480300584 (change=12.738463611559311 %)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | left removable region: 20
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | sum of square deviations: 164765880.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | sum of deviations: -620448934.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | mean x: 1748580903.0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | mean y: 2353730.962962963
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | -- intersect: 6586879345.6054325
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | intersect: 6586879345.6054325
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | chi2: 0.02832170423011719
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | -- intersect: 6586879345.6054325
[2025-05-30 07:42:59] 2025-05-30 05:42:41,206 | INFO     | current memory leak: -3.77 B/s (using 81 data points, chi2=0.03)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | ..............................
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . Timing measurements:
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . get job = 0 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . initial setup = 1 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . payload setup = 3 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . stage-in = 0 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . payload execution = 6509 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . stage-out = 0 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | . log creation = 0 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,207 | INFO     | ..............................
[2025-05-30 07:42:59] 2025-05-30 05:42:41,237 | INFO     | 
[2025-05-30 07:42:59] 2025-05-30 05:42:41,237 | INFO     | job summary report
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | --------------------------------------------------
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | PanDA job id: 6669622617
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | task id: 44871837
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | errors: (none)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | pilot state: finished 
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | transexitcode: 0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | exeerrorcode: 0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | exeerrordiag: 
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | exitcode: 0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | exitmsg: OK
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | cpuconsumptiontime: 18836 s
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | nevents: 400
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | neventsw: 0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | pid: 2274403
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | pgrp: 2274403
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | corecount: 3
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | event service: False
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | sizes: {0: 2405237, 2: 2405443, 11: 2405471, 6516: 2432543, 6517: 2441490, 6518: 2441546, 6524: 2441844}
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | --------------------------------------------------
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | 
[2025-05-30 07:42:59] 2025-05-30 05:42:41,238 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,250 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | job 6669622617 has completed (purged errors)
[2025-05-30 07:42:59] 2025-05-30 05:42:41,251 | INFO     | overall cleanup function is called
[2025-05-30 07:42:59] 2025-05-30 05:42:42,257 | INFO     | --- collectZombieJob: --- 10, [2274403]
[2025-05-30 07:42:59] 2025-05-30 05:42:42,258 | INFO     | zombie collector waiting for pid 2274403
[2025-05-30 07:42:59] 2025-05-30 05:42:42,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 07:42:59] 2025-05-30 05:42:42,258 | INFO     | collected zombie processes
[2025-05-30 07:42:59] 2025-05-30 05:42:42,258 | INFO     | will attempt to kill all subprocesses of pid=2274403
[2025-05-30 07:42:59] 2025-05-30 05:42:42,317 | INFO     | process IDs to be killed: [2274403] (in reverse order)
[2025-05-30 07:42:59] 2025-05-30 05:42:42,347 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 07:42:59] 2025-05-30 05:42:42,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 07:42:59] 2025-05-30 05:42:42,349 | INFO     | did not find any defunct processes belonging to 2274403
[2025-05-30 07:42:59] 2025-05-30 05:42:42,350 | INFO     | did not find any defunct processes belonging to 2274403
[2025-05-30 07:42:59] 2025-05-30 05:42:42,350 | INFO     | ready for new job
[2025-05-30 07:42:59] 2025-05-30 05:42:42,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 07:42:59] 2025-05-30 05:42:42,351 | INFO     | **************************************
[2025-05-30 07:42:59] 2025-05-30 05:42:42,351 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 07:42:59] 2025-05-30 05:42:42,351 | INFO     | **************************************
[2025-05-30 07:42:59] 2025-05-30 05:42:42,351 | INFO     | 
[2025-05-30 07:42:59] 2025-05-30 05:42:42,351 | INFO     | architecture information:
[2025-05-30 07:42:59] 2025-05-30 05:42:42,351 | INFO     | executing command: cat /etc/os-release
[2025-05-30 07:42:59] 2025-05-30 05:42:42,361 | INFO     | cat /etc/os-release:
[2025-05-30 07:42:59] NAME="CentOS Linux"
[2025-05-30 07:42:59] VERSION="7 (Core)"
[2025-05-30 07:42:59] ID="centos"
[2025-05-30 07:42:59] ID_LIKE="rhel fedora"
[2025-05-30 07:42:59] VERSION_ID="7"
[2025-05-30 07:42:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 07:42:59] ANSI_COLOR="0;31"
[2025-05-30 07:42:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 07:42:59] HOME_URL="https://www.centos.org/"
[2025-05-30 07:42:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 07:42:59] 
[2025-05-30 07:42:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 07:42:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 07:42:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 07:42:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 07:42:59] 
[2025-05-30 07:42:59] 2025-05-30 05:42:42,361 | INFO     | **************************************
[2025-05-30 07:42:59] 2025-05-30 05:42:42,864 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-30 07:42:59] 2025-05-30 05:42:42,878 | INFO     | sufficient remaining disk space (352278544384 B)
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | INFO     | update_server=False
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 07:42:59] 2025-05-30 05:42:42,879 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 07:42:59] 2025-05-30 05:42:42,880 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 07:42:59] 2025-05-30 05:42:42,880 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 07:42:59] 2025-05-30 05:42:42,945 | INFO     | all payload control threads have been joined
[2025-05-30 07:42:59] 2025-05-30 05:42:43,352 | INFO     | all data control threads have been joined
[2025-05-30 07:42:59] 2025-05-30 05:42:43,440 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 07:42:59] 2025-05-30 05:42:43,440 | INFO     | aborting loop
[2025-05-30 07:42:59] 2025-05-30 05:42:43,885 | INFO     | [job] retrieve thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:43,885 | INFO     | [job] queue monitor thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:43,951 | INFO     | [payload] control thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:44,200 | INFO     | all job control threads have been joined
[2025-05-30 07:42:59] 2025-05-30 05:42:44,206 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:44,358 | INFO     | [data] control thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:44,446 | INFO     | [job] job monitor thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:44,463 | INFO     | [payload] failed_post thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:44,640 | INFO     | [data] copytool_in thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:44,885 | INFO     | [data] copytool_out thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:45,010 | INFO     | [payload] validate_post thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:45,120 | INFO     | [job] validate thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:45,121 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:45,126 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:45,205 | INFO     | [job] control thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:45,324 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 07:42:59] 2025-05-30 05:42:49,330 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:52,921 | INFO     | job.realtimelogging is not enabled
[2025-05-30 07:42:59] 2025-05-30 05:42:53,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 07:42:59] 2025-05-30 05:42:54,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498172184384)>', '<ExcThread(monitor, started 140497121154816)>']
[2025-05-30 07:42:59] 2025-05-30 05:42:54,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 07:42:59] 2025-05-30 05:42:54,937 | INFO     | [monitor] control thread has ended
[2025-05-30 07:42:59] 2025-05-30 05:42:59,727 | INFO     | all workflow threads have been joined
[2025-05-30 07:42:59] 2025-05-30 05:42:59,728 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 07:42:59] 2025-05-30 05:42:59,728 | INFO     | traces error code: 0
[2025-05-30 07:42:59] 2025-05-30 05:42:59,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 07:42:59] 2025-05-30 05:42:59,779 [wrapper] ==== pilot stdout END ====
[2025-05-30 07:42:59] 2025-05-30 05:42:59,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 07:42:59] 2025-05-30 05:42:59,784 [wrapper] pilotpid: 2267915
[2025-05-30 07:42:59] 2025-05-30 05:42:59,786 [wrapper] Pilot exit status: 0
[2025-05-30 07:42:59] 2025-05-30 05:42:59,793 [wrapper] pandaids: 6669622617
[2025-05-30 07:42:59] 2025-05-30 05:42:59,812 [wrapper] cleanup supervisor_pilot 2289211 2267916
[2025-05-30 07:42:59] 2025-05-30 05:42:59,814 [wrapper] Test setup, not cleaning
[2025-05-30 07:42:59] 2025-05-30 05:42:59,817 [wrapper] apfmon messages muted
[2025-05-30 07:42:59] 2025-05-30 05:42:59,819 [wrapper] ==== wrapper stdout END ====
[2025-05-30 07:42:59] 2025-05-30 05:42:59,821 [wrapper] ==== wrapper stderr END ====
[2025-05-30 07:42:59]  *** Error codes and diagnostics ***
[2025-05-30 07:42:59]     "exeErrorCode": 0,
[2025-05-30 07:42:59]     "exeErrorDiag": "",
[2025-05-30 07:42:59]     "pilotErrorCode": 0,
[2025-05-30 07:42:59]     "pilotErrorDiag": "",
[2025-05-30 07:42:59]  *** Listing of results directory ***
[2025-05-30 07:42:59] total 418888
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc    495897 May 29 10:32 pilot3.tar.gz
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc      5111 May 29 10:38 queuedata.json
[2025-05-30 07:42:59] -rwx------ 1 boinc boinc     37140 May 29 10:38 runpilot2-wrapper.sh
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc       100 May 30 05:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 07:42:59] -rwxr-xr-x 1 boinc boinc      7986 May 30 05:53 run_atlas
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc       105 May 30 05:53 job.xml
[2025-05-30 07:42:59] -rw-r--r-- 2 boinc boinc 224362944 May 30 05:53 EVNT.44871834._003711.pool.root.1
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc      6920 May 30 05:53 init_data.xml
[2025-05-30 07:42:59] drwxrwx--x 2 boinc boinc      4096 May 30 05:53 shared
[2025-05-30 07:42:59] -rw-r--r-- 2 boinc boinc    508874 May 30 05:53 input.tar.gz
[2025-05-30 07:42:59] -rw-r--r-- 2 boinc boinc     15093 May 30 05:53 start_atlas.sh
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc         0 May 30 05:53 boinc_lockfile
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc      2559 May 30 05:53 pandaJob.out
[2025-05-30 07:42:59] -rw------- 1 boinc boinc    992366 May 30 05:53 agis_schedconf.cvmfs.json
[2025-05-30 07:42:59] -rw------- 1 boinc boinc   1603667 May 30 05:53 agis_ddmendpoints.agis.ALL.json
[2025-05-30 07:42:59] drwx------ 4 boinc boinc      4096 May 30 05:53 pilot3
[2025-05-30 07:42:59] -rw------- 1 boinc boinc 199011089 May 30 07:42 HITS.44871837._097634.pool.root.1
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc       530 May 30 07:42 boinc_task_state.xml
[2025-05-30 07:42:59] -rw------- 1 boinc boinc        95 May 30 07:42 pilot_heartbeat.json
[2025-05-30 07:42:59] -rw------- 1 boinc boinc      1022 May 30 07:42 memory_monitor_summary.json
[2025-05-30 07:42:59] -rw------- 1 boinc boinc    239139 May 30 07:42 log.44871837._097634.job.log.tgz.1
[2025-05-30 07:42:59] -rw------- 1 boinc boinc      7659 May 30 07:42 heartbeat.json
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc      8192 May 30 07:42 boinc_mmap_file
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc        27 May 30 07:42 wrapper_checkpoint.txt
[2025-05-30 07:42:59] -rw------- 1 boinc boinc      4552 May 30 07:42 pilotlog.txt
[2025-05-30 07:42:59] -rw------- 1 boinc boinc    621140 May 30 07:42 log.44871837._097634.job.log.1
[2025-05-30 07:42:59] -rw------- 1 boinc boinc       357 May 30 07:42 output.list
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc       620 May 30 07:42 runtime_log
[2025-05-30 07:42:59] -rw------- 1 boinc boinc    880640 May 30 07:42 result.tar.gz
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc      8738 May 30 07:42 runtime_log.err
[2025-05-30 07:42:59] -rw------- 1 boinc boinc       660 May 30 07:42 HcSKDmNxne7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOBeKDmfwqOsm.diag
[2025-05-30 07:42:59] -rw-r--r-- 1 boinc boinc     21057 May 30 07:42 stderr.txt
[2025-05-30 07:42:59] HITS file was successfully produced:
[2025-05-30 07:42:59] -rw------- 1 boinc boinc 199011089 May 30 07:42 shared/HITS.pool.root.1
[2025-05-30 07:42:59]  *** Contents of shared directory: ***
[2025-05-30 07:42:59] total 414840
[2025-05-30 07:42:59] -rw-r--r-- 2 boinc boinc 224362944 May 30 05:53 ATLAS.root_0
[2025-05-30 07:42:59] -rw-r--r-- 2 boinc boinc    508874 May 30 05:53 input.tar.gz
[2025-05-30 07:42:59] -rw-r--r-- 2 boinc boinc     15093 May 30 05:53 start_atlas.sh
[2025-05-30 07:42:59] -rw------- 1 boinc boinc 199011089 May 30 07:42 HITS.pool.root.1
[2025-05-30 07:42:59] -rw------- 1 boinc boinc    880640 May 30 07:42 result.tar.gz
07:43:01 (2264279): run_atlas exited; CPU time 18870.365687
07:43:01 (2264279): called boinc_finish(0)

</stderr_txt>
]]>

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