Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:28:28 (7014): wrapper (7.7.26015): starting
05:28:28 (7014): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 05:28:28] Arguments: --nthreads 8
[2025-05-30 05:28:28] Threads: 8
[2025-05-30 05:28:28] Checking for CVMFS
[2025-05-30 05:28:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 05:28:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 05:28:29] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 05:28:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 05:28:30] 2.11.2.0 5342 25484 91124 146586 0 59 20879245 25165825 4635 130560 0 13599344 99.848 14512893 1806 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-30 05:28:30] CVMFS is ok
[2025-05-30 05:28:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 05:28:30] Checking for apptainer binary...
[2025-05-30 05:28:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 05:28:30] Running /usr/bin/apptainer --version
[2025-05-30 05:28:30] apptainer version 1.3.2-1.el7
[2025-05-30 05:28:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 05:28:33] cg-vwn390.simple-grid.lan
[2025-05-30 05:28:33] apptainer works
[2025-05-30 05:28:33] Set ATHENA_PROC_NUMBER=8
[2025-05-30 05:28:33] Set ATHENA_CORE_NUMBER=8
[2025-05-30 05:28:33] Starting ATLAS job with PandaID=6669623468
[2025-05-30 05:28:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 11:07:47]  *** The last 200 lines of the pilot log: ***
[2025-05-30 11:07:47] 2025-05-30 08:55:00,355 | INFO     | extracted standard info from prmon json
[2025-05-30 11:07:47] 2025-05-30 08:55:00,355 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 11:07:47] 2025-05-30 08:55:00,355 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 11:07:47] 2025-05-30 08:55:00,356 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 11:07:47] 2025-05-30 08:55:00,356 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 11:07:47] 2025-05-30 08:55:00,362 | INFO     | fitting pss+swap vs Time
[2025-05-30 11:07:47] 2025-05-30 08:55:00,363 | INFO     | sum of square deviations: 9148487810.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,366 | INFO     | sum of deviations: 92981237623.99998
[2025-05-30 11:07:47] 2025-05-30 08:55:00,366 | INFO     | mean x: 1748585796.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,366 | INFO     | mean y: 2463135.9773462783
[2025-05-30 11:07:47] 2025-05-30 08:55:00,366 | INFO     | -- intersect: -17769399797.053898
[2025-05-30 11:07:47] 2025-05-30 08:55:00,367 | INFO     | intersect: -17769399797.053898
[2025-05-30 11:07:47] 2025-05-30 08:55:00,367 | INFO     | chi2: 6.271596602452164
[2025-05-30 11:07:47] 2025-05-30 08:55:00,368 | INFO     | sum of square deviations: 8711530780.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,371 | INFO     | sum of deviations: 111541661660.50002
[2025-05-30 11:07:47] 2025-05-30 08:55:00,371 | INFO     | mean x: 1748585643.5
[2025-05-30 11:07:47] 2025-05-30 08:55:00,371 | INFO     | mean y: 2469519.950657895
[2025-05-30 11:07:47] 2025-05-30 08:55:00,371 | INFO     | -- intersect: -22386264808.975708
[2025-05-30 11:07:47] 2025-05-30 08:55:00,371 | INFO     | intersect: -22386264808.975708
[2025-05-30 11:07:47] 2025-05-30 08:55:00,372 | INFO     | chi2: 5.542976133319392
[2025-05-30 11:07:47] 2025-05-30 08:55:00,372 | INFO     | current chi2=5.542976133319392 (change=11.617782764406194 %)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,372 | INFO     | right removable region: 303
[2025-05-30 11:07:47] 2025-05-30 08:55:00,373 | INFO     | sum of square deviations: 8711530780.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,375 | INFO     | sum of deviations: -12931184124.999992
[2025-05-30 11:07:47] 2025-05-30 08:55:00,376 | INFO     | mean x: 1748585948.5
[2025-05-30 11:07:47] 2025-05-30 08:55:00,376 | INFO     | mean y: 2500068.7236842103
[2025-05-30 11:07:47] 2025-05-30 08:55:00,376 | INFO     | -- intersect: 2598058464.7695804
[2025-05-30 11:07:47] 2025-05-30 08:55:00,376 | INFO     | intersect: 2598058464.7695804
[2025-05-30 11:07:47] 2025-05-30 08:55:00,377 | INFO     | chi2: 1.7531818506916579
[2025-05-30 11:07:47] 2025-05-30 08:55:00,377 | INFO     | current chi2=1.7531818506916579 (change=72.04568530434224 %)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,377 | INFO     | sum of square deviations: 8288713550.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,380 | INFO     | sum of deviations: -49599051322.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,381 | INFO     | mean x: 1748586101.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,381 | INFO     | mean y: 2513209.050167224
[2025-05-30 11:07:47] 2025-05-30 08:55:00,381 | INFO     | -- intersect: 10465923633.510412
[2025-05-30 11:07:47] 2025-05-30 08:55:00,381 | INFO     | intersect: 10465923633.510412
[2025-05-30 11:07:47] 2025-05-30 08:55:00,381 | INFO     | chi2: 0.9620500143401058
[2025-05-30 11:07:47] 2025-05-30 08:55:00,381 | INFO     | current chi2=0.9620500143401058 (change=45.125486328725 %)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,382 | INFO     | sum of square deviations: 7879803557.5
[2025-05-30 11:07:47] 2025-05-30 08:55:00,385 | INFO     | sum of deviations: -46143181600.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,385 | INFO     | mean x: 1748586253.5
[2025-05-30 11:07:47] 2025-05-30 08:55:00,385 | INFO     | mean y: 2511900.0476190476
[2025-05-30 11:07:47] 2025-05-30 08:55:00,385 | INFO     | -- intersect: 10242022625.123728
[2025-05-30 11:07:47] 2025-05-30 08:55:00,385 | INFO     | intersect: 10242022625.123728
[2025-05-30 11:07:47] 2025-05-30 08:55:00,386 | INFO     | chi2: 0.9463113386294454
[2025-05-30 11:07:47] 2025-05-30 08:55:00,386 | INFO     | current chi2=0.9463113386294454 (change=1.635951923087492 %)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,386 | INFO     | left removable region: 30
[2025-05-30 11:07:47] 2025-05-30 08:55:00,386 | INFO     | sum of square deviations: 6309000152.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,389 | INFO     | sum of deviations: 4858462181.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,389 | INFO     | mean x: 1748586528.0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,389 | INFO     | mean y: 2506467.04029304
[2025-05-30 11:07:47] 2025-05-30 08:55:00,390 | INFO     | -- intersect: -1344052625.0213833
[2025-05-30 11:07:47] 2025-05-30 08:55:00,390 | INFO     | intersect: -1344052625.0213833
[2025-05-30 11:07:47] 2025-05-30 08:55:00,390 | INFO     | chi2: 0.04007355529438481
[2025-05-30 11:07:47] 2025-05-30 08:55:00,390 | INFO     | -- intersect: -1344052625.0213833
[2025-05-30 11:07:47] 2025-05-30 08:55:00,390 | INFO     | current memory leak: 0.77 B/s (using 273 data points, chi2=0.04)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,391 | INFO     | ..............................
[2025-05-30 11:07:47] 2025-05-30 08:55:00,391 | INFO     | . Timing measurements:
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . get job = 0 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . initial setup = 13 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . payload setup = 171 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . stage-in = 0 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . payload execution = 18950 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . stage-out = 3 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | . log creation = 1 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,392 | INFO     | ..............................
[2025-05-30 11:07:47] 2025-05-30 08:55:00,553 | INFO     | 
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | job summary report
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | --------------------------------------------------
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | PanDA job id: 6669623468
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | task id: 44871837
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | errors: (none)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | pilot state: finished 
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | transexitcode: 0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,554 | INFO     | exeerrorcode: 0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | exeerrordiag: 
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | exitcode: 0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | exitmsg: OK
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | cpuconsumptiontime: 71571 s
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | nevents: 400
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | neventsw: 0
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | pid: 20323
[2025-05-30 11:07:47] 2025-05-30 08:55:00,555 | INFO     | pgrp: 20323
[2025-05-30 11:07:47] 2025-05-30 08:55:00,565 | INFO     | corecount: 8
[2025-05-30 11:07:47] 2025-05-30 08:55:00,566 | INFO     | event service: False
[2025-05-30 11:07:47] 2025-05-30 08:55:00,566 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 22: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 65: 2405558, 76: 2405586, 87: 2405876, 19125: 2437923, 19129: 2446
[2025-05-30 11:07:47] 2025-05-30 08:55:00,566 | INFO     | --------------------------------------------------
[2025-05-30 11:07:47] 2025-05-30 08:55:00,566 | INFO     | 
[2025-05-30 11:07:47] 2025-05-30 08:55:00,566 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-30 11:07:47] 2025-05-30 08:55:00,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 11:07:47] 2025-05-30 08:55:00,979 | INFO     | job 6669623468 has completed (purged errors)
[2025-05-30 11:07:47] 2025-05-30 08:55:00,980 | INFO     | overall cleanup function is called
[2025-05-30 11:07:47] 2025-05-30 08:55:01,988 | INFO     | --- collectZombieJob: --- 10, [20323]
[2025-05-30 11:07:47] 2025-05-30 08:55:01,989 | INFO     | zombie collector waiting for pid 20323
[2025-05-30 11:07:47] 2025-05-30 08:55:01,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 11:07:47] 2025-05-30 08:55:01,989 | INFO     | collected zombie processes
[2025-05-30 11:07:47] 2025-05-30 08:55:01,989 | INFO     | will attempt to kill all subprocesses of pid=20323
[2025-05-30 11:07:47] 2025-05-30 08:55:02,125 | INFO     | process IDs to be killed: [20323] (in reverse order)
[2025-05-30 11:07:47] 2025-05-30 08:55:02,694 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 11:07:47] 2025-05-30 08:55:02,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 11:07:47] 2025-05-30 08:55:02,697 | INFO     | did not find any defunct processes belonging to 20323
[2025-05-30 11:07:47] 2025-05-30 08:55:02,700 | INFO     | did not find any defunct processes belonging to 20323
[2025-05-30 11:07:47] 2025-05-30 08:55:02,700 | INFO     | ready for new job
[2025-05-30 11:07:47] 2025-05-30 08:55:02,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 11:07:47] 2025-05-30 08:55:02,702 | INFO     | **************************************
[2025-05-30 11:07:47] 2025-05-30 08:55:02,703 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 11:07:47] 2025-05-30 08:55:02,703 | INFO     | **************************************
[2025-05-30 11:07:47] 2025-05-30 08:55:02,703 | INFO     | 
[2025-05-30 11:07:47] 2025-05-30 08:55:02,703 | INFO     | pilot is running in a VM
[2025-05-30 11:07:47] 2025-05-30 08:55:02,704 | INFO     | architecture information:
[2025-05-30 11:07:47] 2025-05-30 08:55:02,709 | INFO     | executing command: cat /etc/os-release
[2025-05-30 11:07:47] 2025-05-30 08:55:02,907 | INFO     | cat /etc/os-release:
[2025-05-30 11:07:47] NAME="CentOS Linux"
[2025-05-30 11:07:47] VERSION="7 (Core)"
[2025-05-30 11:07:47] ID="centos"
[2025-05-30 11:07:47] ID_LIKE="rhel fedora"
[2025-05-30 11:07:47] VERSION_ID="7"
[2025-05-30 11:07:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 11:07:47] ANSI_COLOR="0;31"
[2025-05-30 11:07:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 11:07:47] HOME_URL="https://www.centos.org/"
[2025-05-30 11:07:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 11:07:47] 
[2025-05-30 11:07:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 11:07:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 11:07:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 11:07:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 11:07:47] 
[2025-05-30 11:07:47] 2025-05-30 08:55:02,907 | INFO     | **************************************
[2025-05-30 11:07:47] 2025-05-30 08:55:03,411 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-30 11:07:47] 2025-05-30 08:55:03,654 | INFO     | sufficient remaining disk space (496272146432 B)
[2025-05-30 11:07:47] 2025-05-30 08:55:03,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 11:07:47] 2025-05-30 08:55:03,655 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 11:07:47] 2025-05-30 08:55:03,655 | INFO     | update_server=False
[2025-05-30 11:07:47] 2025-05-30 08:55:03,655 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 11:07:47] 2025-05-30 08:55:03,655 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 11:07:47] 2025-05-30 08:55:03,656 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 11:07:47] 2025-05-30 08:55:03,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 11:07:47] 2025-05-30 08:55:03,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 11:07:47] 2025-05-30 08:55:03,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 11:07:47] 2025-05-30 08:55:03,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 11:07:47] 2025-05-30 08:55:03,661 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 11:07:47] 2025-05-30 08:55:03,662 | INFO     | aborting loop
[2025-05-30 11:07:47] 2025-05-30 08:55:04,348 | INFO     | all payload control threads have been joined
[2025-05-30 11:07:47] 2025-05-30 08:55:04,499 | INFO     | all data control threads have been joined
[2025-05-30 11:07:47] 2025-05-30 08:55:04,661 | INFO     | [job] retrieve thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:04,668 | INFO     | [job] job monitor thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:04,881 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:04,980 | INFO     | [payload] validate_post thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,279 | INFO     | all job control threads have been joined
[2025-05-30 11:07:47] 2025-05-30 08:55:05,354 | INFO     | [payload] control thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,482 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,506 | INFO     | [data] control thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 11:07:47] 2025-05-30 08:55:05,606 | INFO     | [job] validate thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,664 | INFO     | [data] copytool_out thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,744 | INFO     | [payload] failed_post thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,800 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:05,884 | INFO     | [data] copytool_in thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:06,074 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:06,285 | INFO     | [job] control thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:06,573 | INFO     | [job] queue monitor thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:07,667 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 11:07:47] 2025-05-30 08:55:08,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140133018818368)>', '<ExcThread(monitor, started 140132208330496)>']
[2025-05-30 11:07:47] 2025-05-30 08:55:08,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 11:07:47] 2025-05-30 08:55:08,686 | INFO     | [monitor] control thread has ended
[2025-05-30 11:07:47] 2025-05-30 08:55:13,701 | INFO     | all workflow threads have been joined
[2025-05-30 11:07:47] 2025-05-30 08:55:13,702 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 11:07:47] 2025-05-30 08:55:13,702 | INFO     | traces error code: 0
[2025-05-30 11:07:47] 2025-05-30 08:55:13,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 11:07:47] 2025-05-30 08:55:14,146 [wrapper] ==== pilot stdout END ====
[2025-05-30 11:07:47] 2025-05-30 08:55:14,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 11:07:47] 2025-05-30 08:55:14,337 [wrapper] pilotpid: 11668
[2025-05-30 11:07:47] 2025-05-30 08:55:14,450 [wrapper] Pilot exit status: 0
[2025-05-30 11:07:47] 2025-05-30 08:55:14,946 [wrapper] pandaids: 6669623468
[2025-05-30 11:07:47] 2025-05-30 08:55:15,992 [wrapper] cleanup supervisor_pilot  7986 11669
[2025-05-30 11:07:47] 2025-05-30 08:55:16,095 [wrapper] Test setup, not cleaning
[2025-05-30 11:07:47] 2025-05-30 08:55:16,231 [wrapper] apfmon messages muted
[2025-05-30 11:07:47] 2025-05-30 08:55:16,286 [wrapper] ==== wrapper stdout END ====
[2025-05-30 11:07:47] 2025-05-30 08:55:16,379 [wrapper] ==== wrapper stderr END ====
[2025-05-30 11:07:47]  *** Error codes and diagnostics ***
[2025-05-30 11:07:47]     "exeErrorCode": 0,
[2025-05-30 11:07:47]     "exeErrorDiag": "",
[2025-05-30 11:07:47]     "pilotErrorCode": 0,
[2025-05-30 11:07:47]     "pilotErrorDiag": "",
[2025-05-30 11:07:47]  *** Listing of results directory ***
[2025-05-30 11:07:47] total 423212
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc    495897 May 29 10:32 pilot3.tar.gz
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc      5111 May 29 10:35 queuedata.json
[2025-05-30 11:07:47] -rwx------. 1 boinc boinc     37140 May 29 10:35 runpilot2-wrapper.sh
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc       100 May 30 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 11:07:47] -rwxr-xr-x. 1 boinc boinc      7986 May 30 05:28 run_atlas
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc       105 May 30 05:28 job.xml
[2025-05-30 11:07:47] -rw-r--r--. 2 boinc boinc 226225197 May 30 05:28 EVNT.44871834._003713.pool.root.1
[2025-05-30 11:07:47] -rw-r--r--. 2 boinc boinc     15093 May 30 05:28 start_atlas.sh
[2025-05-30 11:07:47] drwxrwx--x. 2 boinc boinc        68 May 30 05:28 shared
[2025-05-30 11:07:47] -rw-r--r--. 2 boinc boinc    508880 May 30 05:28 input.tar.gz
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc      6372 May 30 05:28 init_data.xml
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc         0 May 30 05:28 boinc_lockfile
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc      2559 May 30 05:28 pandaJob.out
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc    992366 May 30 05:31 agis_schedconf.cvmfs.json
[2025-05-30 11:07:47] drwx------. 4 boinc boinc      4096 May 30 05:31 pilot3
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc 199172545 May 30 10:52 HITS.44871837._097690.pool.root.1
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc       531 May 30 10:52 boinc_task_state.xml
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc      1015 May 30 10:53 memory_monitor_summary.json
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc   1603667 May 30 10:53 agis_ddmendpoints.agis.ALL.json
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc    430445 May 30 10:53 log.44871837._097690.job.log.tgz.1
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc        95 May 30 10:54 pilot_heartbeat.json
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc      7686 May 30 10:55 heartbeat.json
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc      4539 May 30 10:55 pilotlog.txt
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc   1642237 May 30 10:55 log.44871837._097690.job.log.1
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc       357 May 30 10:55 output.list
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc       620 May 30 10:55 runtime_log
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc   2088960 May 30 10:55 result.tar.gz
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc      8659 May 30 10:55 runtime_log.err
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc       656 May 30 10:55 LURMDmUune7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmuUKDmvt2hWm.diag
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc      8192 May 30 11:07 boinc_mmap_file
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc        28 May 30 11:07 wrapper_checkpoint.txt
[2025-05-30 11:07:47] -rw-r--r--. 1 boinc boinc     20511 May 30 11:07 stderr.txt
[2025-05-30 11:07:47] HITS file was successfully produced:
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc 199172545 May 30 10:52 shared/HITS.pool.root.1
[2025-05-30 11:07:47]  *** Contents of shared directory: ***
[2025-05-30 11:07:47] total 417988
[2025-05-30 11:07:47] -rw-r--r--. 2 boinc boinc 226225197 May 30 05:28 ATLAS.root_0
[2025-05-30 11:07:47] -rw-r--r--. 2 boinc boinc     15093 May 30 05:28 start_atlas.sh
[2025-05-30 11:07:47] -rw-r--r--. 2 boinc boinc    508880 May 30 05:28 input.tar.gz
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc 199172545 May 30 10:52 HITS.pool.root.1
[2025-05-30 11:07:47] -rw-------. 1 boinc boinc   2088960 May 30 10:55 result.tar.gz
11:07:49 (7014): run_atlas exited; CPU time 71846.335887
11:07:49 (7014): called boinc_finish(0)

</stderr_txt>
]]>

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