Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:48:28 (3107767): wrapper (7.7.26015): starting
10:48:28 (3107767): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 10:48:28] Arguments: --nthreads 8
[2025-05-29 10:48:28] Threads: 8
[2025-05-29 10:48:28] Checking for CVMFS
[2025-05-29 10:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 10:48:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 10:48:29] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 10:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 10:48:29] 2.12.6.0 4870 28812 282320 146565 0 691 25241716 32503809 29669 16776704 0 218727397 99.598 218892519 22208 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-29 10:48:29] CVMFS is ok
[2025-05-29 10:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 10:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 10:48:29] Further information can be found at the LHC@home message board.
[2025-05-29 10:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 10:48:29] Checking for apptainer binary...
[2025-05-29 10:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 10:48:29] Running /usr/bin/apptainer --version
[2025-05-29 10:48:30] apptainer version 1.4.1-1.el9
[2025-05-29 10:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 10:48:30] c7-3-16.aglt2.org
[2025-05-29 10:48:30] apptainer works
[2025-05-29 10:48:30] Set ATHENA_PROC_NUMBER=8
[2025-05-29 10:48:30] Set ATHENA_CORE_NUMBER=8
[2025-05-29 10:48:30] Starting ATLAS job with PandaID=6669133596
[2025-05-29 10:48:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 15:47:16]  *** The last 200 lines of the pilot log: ***
[2025-05-29 15:47:16] 2025-05-29 19:47:01,954 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-29 15:47:16] 2025-05-29 19:47:01,955 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6669133596/memory_monitor_summary.json (trf name=prmon)
[2025-05-29 15:47:16] 2025-05-29 19:47:01,955 | INFO     | extracted standard info from prmon json
[2025-05-29 15:47:16] 2025-05-29 19:47:01,956 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 15:47:16] 2025-05-29 19:47:01,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 15:47:16] 2025-05-29 19:47:01,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 15:47:16] 2025-05-29 19:47:01,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 15:47:16] 2025-05-29 19:47:01,964 | INFO     | fitting pss+swap vs Time
[2025-05-29 15:47:16] 2025-05-29 19:47:01,965 | INFO     | sum of square deviations: 7799581188.327593
[2025-05-29 15:47:16] 2025-05-29 19:47:01,967 | INFO     | sum of deviations: 54268141351.36182
[2025-05-29 15:47:16] 2025-05-29 19:47:01,967 | INFO     | mean x: 1748539089.1262798
[2025-05-29 15:47:16] 2025-05-29 19:47:01,967 | INFO     | mean y: 2286113.368600683
[2025-05-29 15:47:16] 2025-05-29 19:47:01,968 | INFO     | -- intersect: -12163747440.98343
[2025-05-29 15:47:16] 2025-05-29 19:47:01,968 | INFO     | intersect: -12163747440.98343
[2025-05-29 15:47:16] 2025-05-29 19:47:01,968 | INFO     | chi2: 2.2837984955764865
[2025-05-29 15:47:16] 2025-05-29 19:47:01,968 | INFO     | sum of square deviations: 7407064183.246555
[2025-05-29 15:47:16] 2025-05-29 19:47:01,970 | INFO     | sum of deviations: 69597659283.67711
[2025-05-29 15:47:16] 2025-05-29 19:47:01,970 | INFO     | mean x: 1748538936.6284723
[2025-05-29 15:47:16] 2025-05-29 19:47:01,971 | INFO     | mean y: 2291975.6979166665
[2025-05-29 15:47:16] 2025-05-29 19:47:01,971 | INFO     | -- intersect: -16427188604.605665
[2025-05-29 15:47:16] 2025-05-29 19:47:01,971 | INFO     | intersect: -16427188604.605665
[2025-05-29 15:47:16] 2025-05-29 19:47:01,971 | INFO     | chi2: 1.6017476696533015
[2025-05-29 15:47:16] 2025-05-29 19:47:01,972 | INFO     | current chi2=1.6017476696533015 (change=29.86475502301348 %)
[2025-05-29 15:47:16] 2025-05-29 19:47:01,972 | INFO     | sum of square deviations: 7027942778.162584
[2025-05-29 15:47:16] 2025-05-29 19:47:01,974 | INFO     | sum of deviations: 66829513072.33212
[2025-05-29 15:47:16] 2025-05-29 19:47:01,974 | INFO     | mean x: 1748538784.130742
[2025-05-29 15:47:16] 2025-05-29 19:47:01,974 | INFO     | mean y: 2290862.1802120144
[2025-05-29 15:47:16] 2025-05-29 19:47:01,974 | INFO     | -- intersect: -16624764767.048452
[2025-05-29 15:47:16] 2025-05-29 19:47:01,974 | INFO     | intersect: -16624764767.048452
[2025-05-29 15:47:16] 2025-05-29 19:47:01,974 | INFO     | chi2: 1.6021898212464216
[2025-05-29 15:47:16] 2025-05-29 19:47:01,975 | INFO     | current chi2=1.6021898212464216 (change=-0.02760432254699731 %)
[2025-05-29 15:47:16] 2025-05-29 19:47:01,975 | INFO     | right removable region: 282
[2025-05-29 15:47:16] 2025-05-29 19:47:01,975 | INFO     | sum of square deviations: 7407041613.246555
[2025-05-29 15:47:16] 2025-05-29 19:47:01,977 | INFO     | sum of deviations: 10176396564.930569
[2025-05-29 15:47:16] 2025-05-29 19:47:01,978 | INFO     | mean x: 1748539241.6284723
[2025-05-29 15:47:16] 2025-05-29 19:47:01,978 | INFO     | mean y: 2303129.5694444445
[2025-05-29 15:47:16] 2025-05-29 19:47:01,978 | INFO     | -- intersect: -2399982379.4429903
[2025-05-29 15:47:16] 2025-05-29 19:47:01,978 | INFO     | intersect: -2399982379.4429903
[2025-05-29 15:47:16] 2025-05-29 19:47:01,979 | INFO     | chi2: 0.8240542780256825
[2025-05-29 15:47:16] 2025-05-29 19:47:01,979 | INFO     | current chi2=0.8240542780256825 (change=63.917382395084246 %)
[2025-05-29 15:47:16] 2025-05-29 19:47:01,979 | INFO     | sum of square deviations: 7027897638.162584
[2025-05-29 15:47:16] 2025-05-29 19:47:01,981 | INFO     | sum of deviations: 4333119933.848045
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | mean x: 1748539394.130742
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | mean y: 2305474.2473498234
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | -- intersect: -1075773816.874395
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | intersect: -1075773816.874395
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | chi2: 0.808752399439213
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | current chi2=0.808752399439213 (change=1.8569017835974013 %)
[2025-05-29 15:47:16] 2025-05-29 19:47:01,982 | INFO     | left removable region: 20
[2025-05-29 15:47:16] 2025-05-29 19:47:01,983 | INFO     | sum of square deviations: 5576574078.274809
[2025-05-29 15:47:16] 2025-05-29 19:47:01,984 | INFO     | sum of deviations: 12060091898.809166
[2025-05-29 15:47:16] 2025-05-29 19:47:01,985 | INFO     | mean x: 1748539363.6412213
[2025-05-29 15:47:16] 2025-05-29 19:47:01,985 | INFO     | mean y: 2313809.7213740456
[2025-05-29 15:47:16] 2025-05-29 19:47:01,986 | INFO     | -- intersect: -3779137869.7875896
[2025-05-29 15:47:16] 2025-05-29 19:47:01,986 | INFO     | intersect: -3779137869.7875896
[2025-05-29 15:47:16] 2025-05-29 19:47:01,986 | INFO     | chi2: 0.08833047471212883
[2025-05-29 15:47:16] 2025-05-29 19:47:01,986 | INFO     | -- intersect: -3779137869.7875896
[2025-05-29 15:47:16] 2025-05-29 19:47:01,987 | INFO     | current memory leak: 2.16 B/s (using 262 data points, chi2=0.09)
[2025-05-29 15:47:16] 2025-05-29 19:47:01,987 | INFO     | ..............................
[2025-05-29 15:47:16] 2025-05-29 19:47:01,987 | INFO     | . Timing measurements:
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . get job = 0 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . initial setup = 2 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . payload setup = 16 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . stage-in = 0 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . payload execution = 17837 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . stage-out = 2 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | . log creation = 0 s
[2025-05-29 15:47:16] 2025-05-29 19:47:01,988 | INFO     | ..............................
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | 
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | job summary report
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | --------------------------------------------------
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | PanDA job id: 6669133596
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | task id: 44871837
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | errors: (none)
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | pilot state: finished 
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | transexitcode: 0
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | exeerrorcode: 0
[2025-05-29 15:47:16] 2025-05-29 19:47:02,086 | INFO     | exeerrordiag: 
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | exitcode: 0
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | exitmsg: OK
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | cpuconsumptiontime: 43281 s
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | nevents: 400
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | neventsw: 0
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | pid: 3119223
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | pgrp: 3119223
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | corecount: 8
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | event service: False
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | sizes: {0: 2405234, 1: 2405234, 10: 2405468, 11: 2405496, 17857: 2437194, 17859: 2446319, 17865: 2446433}
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | --------------------------------------------------
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | 
[2025-05-29 15:47:16] 2025-05-29 19:47:02,087 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-05-29 15:47:16] 2025-05-29 19:47:02,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | job 6669133596 has completed (purged errors)
[2025-05-29 15:47:16] 2025-05-29 19:47:02,107 | INFO     | overall cleanup function is called
[2025-05-29 15:47:16] 2025-05-29 19:47:03,115 | INFO     | --- collectZombieJob: --- 10, [3119223]
[2025-05-29 15:47:16] 2025-05-29 19:47:03,115 | INFO     | zombie collector waiting for pid 3119223
[2025-05-29 15:47:16] 2025-05-29 19:47:03,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 15:47:16] 2025-05-29 19:47:03,115 | INFO     | collected zombie processes
[2025-05-29 15:47:16] 2025-05-29 19:47:03,116 | INFO     | will attempt to kill all subprocesses of pid=3119223
[2025-05-29 15:47:16] 2025-05-29 19:47:03,564 | INFO     | process IDs to be killed: [3119223] (in reverse order)
[2025-05-29 15:47:16] 2025-05-29 19:47:03,717 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 15:47:16] 2025-05-29 19:47:03,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 15:47:16] 2025-05-29 19:47:03,734 | INFO     | did not find any defunct processes belonging to 3119223
[2025-05-29 15:47:16] 2025-05-29 19:47:03,750 | INFO     | did not find any defunct processes belonging to 3119223
[2025-05-29 15:47:16] 2025-05-29 19:47:03,751 | INFO     | ready for new job
[2025-05-29 15:47:16] 2025-05-29 19:47:03,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 15:47:16] 2025-05-29 19:47:03,752 | INFO     | **************************************
[2025-05-29 15:47:16] 2025-05-29 19:47:03,753 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 15:47:16] 2025-05-29 19:47:03,753 | INFO     | **************************************
[2025-05-29 15:47:16] 2025-05-29 19:47:03,753 | INFO     | 
[2025-05-29 15:47:16] 2025-05-29 19:47:03,771 | INFO     | architecture information:
[2025-05-29 15:47:16] 2025-05-29 19:47:03,772 | INFO     | executing command: cat /etc/os-release
[2025-05-29 15:47:16] 2025-05-29 19:47:03,786 | INFO     | cat /etc/os-release:
[2025-05-29 15:47:16] NAME="CentOS Linux"
[2025-05-29 15:47:16] VERSION="7 (Core)"
[2025-05-29 15:47:16] ID="centos"
[2025-05-29 15:47:16] ID_LIKE="rhel fedora"
[2025-05-29 15:47:16] VERSION_ID="7"
[2025-05-29 15:47:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 15:47:16] ANSI_COLOR="0;31"
[2025-05-29 15:47:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 15:47:16] HOME_URL="https://www.centos.org/"
[2025-05-29 15:47:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 15:47:16] 
[2025-05-29 15:47:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 15:47:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 15:47:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 15:47:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 15:47:16] 
[2025-05-29 15:47:16] 2025-05-29 19:47:03,787 | INFO     | **************************************
[2025-05-29 15:47:16] 2025-05-29 19:47:04,289 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-05-29 15:47:16] 2025-05-29 19:47:04,308 | INFO     | sufficient remaining disk space (94280613888 B)
[2025-05-29 15:47:16] 2025-05-29 19:47:04,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 15:47:16] 2025-05-29 19:47:04,308 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 15:47:16] 2025-05-29 19:47:04,308 | INFO     | update_server=False
[2025-05-29 15:47:16] 2025-05-29 19:47:04,308 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 15:47:16] 2025-05-29 19:47:04,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 15:47:16] 2025-05-29 19:47:04,309 | INFO     | aborting loop
[2025-05-29 15:47:16] 2025-05-29 19:47:04,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 15:47:16] 2025-05-29 19:47:04,674 | INFO     | all data control threads have been joined
[2025-05-29 15:47:16] 2025-05-29 19:47:04,704 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 15:47:16] 2025-05-29 19:47:04,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 15:47:16] 2025-05-29 19:47:04,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 15:47:16] 2025-05-29 19:47:05,313 | INFO     | [job] retrieve thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:05,315 | INFO     | [job] job monitor thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:05,420 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:05,567 | INFO     | all payload control threads have been joined
[2025-05-29 15:47:16] 2025-05-29 19:47:05,568 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:05,680 | INFO     | [data] control thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:05,743 | INFO     | [payload] failed_post thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:05,901 | INFO     | all job control threads have been joined
[2025-05-29 15:47:16] 2025-05-29 19:47:05,962 | INFO     | [job] validate thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,364 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,372 | INFO     | [data] copytool_out thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,409 | INFO     | [payload] validate_post thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,517 | INFO     | [data] copytool_in thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,572 | INFO     | [payload] control thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,906 | INFO     | [job] control thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:06,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 15:47:16] 2025-05-29 19:47:07,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 15:47:16] 2025-05-29 19:47:08,105 | INFO     | [job] queue monitor thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:10,933 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 15:47:16] 2025-05-29 19:47:11,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140019730159424)>', '<ExcThread(monitor, started 140018995676928)>']
[2025-05-29 15:47:16] 2025-05-29 19:47:11,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 15:47:16] 2025-05-29 19:47:11,743 | INFO     | [monitor] control thread has ended
[2025-05-29 15:47:16] 2025-05-29 19:47:16,344 | INFO     | all workflow threads have been joined
[2025-05-29 15:47:16] 2025-05-29 19:47:16,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 15:47:16] 2025-05-29 19:47:16,345 | INFO     | traces error code: 0
[2025-05-29 15:47:16] 2025-05-29 19:47:16,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 15:47:16] 2025-05-29 19:47:16,474 [wrapper] ==== pilot stdout END ====
[2025-05-29 15:47:16] 2025-05-29 19:47:16,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 15:47:16] 2025-05-29 19:47:16,479 [wrapper] pilotpid: 3112806
[2025-05-29 15:47:16] 2025-05-29 19:47:16,482 [wrapper] Pilot exit status: 0
[2025-05-29 15:47:16] 2025-05-29 19:47:16,494 [wrapper] pandaids: 6669133596
[2025-05-29 15:47:16] 2025-05-29 19:47:16,603 [wrapper] cleanup supervisor_pilot 1731768 3112807
[2025-05-29 15:47:16] 2025-05-29 19:47:16,607 [wrapper] Test setup, not cleaning
[2025-05-29 15:47:16] 2025-05-29 19:47:16,614 [wrapper] apfmon messages muted
[2025-05-29 15:47:16] 2025-05-29 19:47:16,618 [wrapper] ==== wrapper stdout END ====
[2025-05-29 15:47:16] 2025-05-29 19:47:16,621 [wrapper] ==== wrapper stderr END ====
[2025-05-29 15:47:16]  *** Error codes and diagnostics ***
[2025-05-29 15:47:16]     "exeErrorCode": 0,
[2025-05-29 15:47:16]     "exeErrorDiag": "",
[2025-05-29 15:47:16]     "pilotErrorCode": 0,
[2025-05-29 15:47:16]     "pilotErrorDiag": "",
[2025-05-29 15:47:16]  *** Listing of results directory ***
[2025-05-29 15:47:16] total 418192
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas    495897 May 28 22:05 pilot3.tar.gz
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas      5111 May 28 22:21 queuedata.json
[2025-05-29 15:47:16] -rwx------. 1 boincer umatlas     37140 May 28 22:21 runpilot2-wrapper.sh
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas       100 May 29 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 15:47:16] -rwxr-xr-x. 1 boincer umatlas      7986 May 29 10:48 run_atlas
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas       105 May 29 10:48 job.xml
[2025-05-29 15:47:16] -rw-r--r--. 2 boincer umatlas 221570752 May 29 10:48 EVNT.44871834._003638.pool.root.1
[2025-05-29 15:47:16] -rw-r--r--. 2 boincer umatlas     15093 May 29 10:48 start_atlas.sh
[2025-05-29 15:47:16] drwxrwx--x. 2 boincer umatlas      4096 May 29 10:48 shared
[2025-05-29 15:47:16] -rw-r--r--. 2 boincer umatlas    508879 May 29 10:48 input.tar.gz
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas         0 May 29 10:48 boinc_lockfile
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas      2559 May 29 10:48 pandaJob.out
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas    992776 May 29 10:48 agis_schedconf.cvmfs.json
[2025-05-29 15:47:16] drwx------. 4 boincer umatlas      4096 May 29 10:48 pilot3
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas      6934 May 29 15:37 init_data.xml
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas 199130385 May 29 15:46 HITS.44871837._093608.pool.root.1
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas       531 May 29 15:46 boinc_task_state.xml
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas        95 May 29 15:46 pilot_heartbeat.json
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas      1061 May 29 15:46 memory_monitor_summary.json
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas   1603667 May 29 15:46 agis_ddmendpoints.agis.ALL.json
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas    432960 May 29 15:46 log.44871837._093608.job.log.tgz.1
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas      7704 May 29 15:47 heartbeat.json
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas      8192 May 29 15:47 boinc_mmap_file
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas        28 May 29 15:47 wrapper_checkpoint.txt
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas      4353 May 29 15:47 pilotlog.txt
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas   1409689 May 29 15:47 log.44871837._093608.job.log.1
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas       357 May 29 15:47 output.list
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas       620 May 29 15:47 runtime_log
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas   1863680 May 29 15:47 result.tar.gz
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas      8655 May 29 15:47 runtime_log.err
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas       658 May 29 15:47 QZLLDmF5he7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTadKDm9CspQo.diag
[2025-05-29 15:47:16] -rw-r--r--. 1 boincer umatlas     20894 May 29 15:47 stderr.txt
[2025-05-29 15:47:16] HITS file was successfully produced:
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas 199130385 May 29 15:46 shared/HITS.pool.root.1
[2025-05-29 15:47:16]  *** Contents of shared directory: ***
[2025-05-29 15:47:16] total 413184
[2025-05-29 15:47:16] -rw-r--r--. 2 boincer umatlas 221570752 May 29 10:48 ATLAS.root_0
[2025-05-29 15:47:16] -rw-r--r--. 2 boincer umatlas     15093 May 29 10:48 start_atlas.sh
[2025-05-29 15:47:16] -rw-r--r--. 2 boincer umatlas    508879 May 29 10:48 input.tar.gz
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas 199130385 May 29 15:46 HITS.pool.root.1
[2025-05-29 15:47:16] -rw-------. 1 boincer umatlas   1863680 May 29 15:47 result.tar.gz
15:47:18 (3107767): run_atlas exited; CPU time 43934.766882
15:47:18 (3107767): called boinc_finish(0)

</stderr_txt>
]]>

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