Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:13:42 (1283877): wrapper (7.7.26015): starting
23:13:42 (1283877): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 23:13:42] Arguments: --nthreads 4
[2025-06-03 23:13:42] Threads: 4
[2025-06-03 23:13:42] Checking for CVMFS
[2025-06-03 23:13:42] No cvmfs_config command found, will try listing directly
[2025-06-03 23:13:42] CVMFS is ok
[2025-06-03 23:13:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 23:13:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 23:13:42] Further information can be found at the LHC@home message board.
[2025-06-03 23:13:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 23:13:42] Checking for apptainer binary...
[2025-06-03 23:13:42] which: no apptainer in ((null))
[2025-06-03 23:13:42] apptainer is not installed, using version from CVMFS
[2025-06-03 23:13:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 23:13:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-06-03 23:13:42] apptainer works
[2025-06-03 23:13:42] Set ATHENA_PROC_NUMBER=4
[2025-06-03 23:13:42] Set ATHENA_CORE_NUMBER=4
[2025-06-03 23:13:42] Starting ATLAS job with PandaID=6669511985
[2025-06-03 23:13:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:38:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:38:38] 2025-06-04 01:33:19,287 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6669511985/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,288 | INFO     | extracted standard info from prmon json
[2025-06-04 03:38:38] 2025-06-04 01:33:19,288 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:38:38] 2025-06-04 01:33:19,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:38:38] 2025-06-04 01:33:19,288 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:38:38] 2025-06-04 01:33:19,288 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:38:38] 2025-06-04 01:33:19,294 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:38:38] 2025-06-04 01:33:19,294 | INFO     | sum of square deviations: 5141528960.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,302 | INFO     | sum of deviations: -52986374124.00001
[2025-06-04 03:38:38] 2025-06-04 01:33:19,303 | INFO     | mean x: 1748993008.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,303 | INFO     | mean y: 2385302.1647058823
[2025-06-04 03:38:38] 2025-06-04 01:33:19,303 | INFO     | -- intersect: 18026750930.19535
[2025-06-04 03:38:38] 2025-06-04 01:33:19,303 | INFO     | intersect: 18026750930.19535
[2025-06-04 03:38:38] 2025-06-04 01:33:19,304 | INFO     | chi2: 2.0158187495632482
[2025-06-04 03:38:38] 2025-06-04 01:33:19,305 | INFO     | sum of square deviations: 4844974562.5
[2025-06-04 03:38:38] 2025-06-04 01:33:19,306 | INFO     | sum of deviations: -51632471316.00001
[2025-06-04 03:38:38] 2025-06-04 01:33:19,307 | INFO     | mean x: 1748992855.5
[2025-06-04 03:38:38] 2025-06-04 01:33:19,307 | INFO     | mean y: 2385999.536
[2025-06-04 03:38:38] 2025-06-04 01:33:19,307 | INFO     | -- intersect: 18641250306.987705
[2025-06-04 03:38:38] 2025-06-04 01:33:19,307 | INFO     | intersect: 18641250306.987705
[2025-06-04 03:38:38] 2025-06-04 01:33:19,307 | INFO     | chi2: 2.011363492141928
[2025-06-04 03:38:38] 2025-06-04 01:33:19,308 | INFO     | current chi2=2.011363492141928 (change=0.221014782320367 %)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,308 | INFO     | right removable region: 249
[2025-06-04 03:38:38] 2025-06-04 01:33:19,308 | INFO     | sum of square deviations: 4844974562.5
[2025-06-04 03:38:38] 2025-06-04 01:33:19,310 | INFO     | sum of deviations: -90470551678.00008
[2025-06-04 03:38:38] 2025-06-04 01:33:19,311 | INFO     | mean x: 1748993160.5
[2025-06-04 03:38:38] 2025-06-04 01:33:19,311 | INFO     | mean y: 2404405.784
[2025-06-04 03:38:38] 2025-06-04 01:33:19,311 | INFO     | -- intersect: 32661477032.542282
[2025-06-04 03:38:38] 2025-06-04 01:33:19,311 | INFO     | intersect: 32661477032.542282
[2025-06-04 03:38:38] 2025-06-04 01:33:19,312 | INFO     | chi2: 0.48789060391804223
[2025-06-04 03:38:38] 2025-06-04 01:33:19,312 | INFO     | current chi2=0.48789060391804223 (change=75.79690118351417 %)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,312 | INFO     | sum of square deviations: 4560048290.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,314 | INFO     | sum of deviations: -83257510237.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,314 | INFO     | mean x: 1748993313.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,314 | INFO     | mean y: 2400529.506122449
[2025-06-04 03:38:38] 2025-06-04 01:33:19,315 | INFO     | -- intersect: 31935577417.319748
[2025-06-04 03:38:38] 2025-06-04 01:33:19,315 | INFO     | intersect: 31935577417.319748
[2025-06-04 03:38:38] 2025-06-04 01:33:19,315 | INFO     | chi2: 0.4825367555883732
[2025-06-04 03:38:38] 2025-06-04 01:33:19,315 | INFO     | current chi2=0.4825367555883732 (change=1.0973460621447773 %)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,316 | INFO     | left removable region: 20
[2025-06-04 03:38:38] 2025-06-04 01:33:19,316 | INFO     | sum of square deviations: 3723716330.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,318 | INFO     | sum of deviations: -57844052882.00001
[2025-06-04 03:38:38] 2025-06-04 01:33:19,318 | INFO     | mean x: 1748993435.0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,318 | INFO     | mean y: 2387920.751091703
[2025-06-04 03:38:38] 2025-06-04 01:33:19,318 | INFO     | -- intersect: 27171178392.073284
[2025-06-04 03:38:38] 2025-06-04 01:33:19,318 | INFO     | intersect: 27171178392.073284
[2025-06-04 03:38:38] 2025-06-04 01:33:19,319 | INFO     | chi2: 0.4150768092045582
[2025-06-04 03:38:38] 2025-06-04 01:33:19,319 | INFO     | -- intersect: 27171178392.073284
[2025-06-04 03:38:38] 2025-06-04 01:33:19,319 | INFO     | current memory leak: -15.53 B/s (using 229 data points, chi2=0.42)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,320 | INFO     | ..............................
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . Timing measurements:
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . get job = 0 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . initial setup = 1 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . payload setup = 7 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . stage-in = 0 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . payload execution = 15532 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . stage-out = 1 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,321 | INFO     | . log creation = 0 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,322 | INFO     | ..............................
[2025-06-04 03:38:38] 2025-06-04 01:33:19,322 | INFO     | sufficient remaining disk space (1649751883776 B)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,323 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,438 | INFO     | 
[2025-06-04 03:38:38] 2025-06-04 01:33:19,438 | INFO     | job summary report
[2025-06-04 03:38:38] 2025-06-04 01:33:19,438 | INFO     | --------------------------------------------------
[2025-06-04 03:38:38] 2025-06-04 01:33:19,438 | INFO     | PanDA job id: 6669511985
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | task id: 44871837
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | errors: (none)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | pilot state: finished 
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | transexitcode: 0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | exeerrorcode: 0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,439 | INFO     | exeerrordiag: 
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | exitcode: 0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | exitmsg: OK
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | cpuconsumptiontime: 59480 s
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | nevents: 400
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | neventsw: 0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | pid: 1294308
[2025-06-04 03:38:38] 2025-06-04 01:33:19,440 | INFO     | pgrp: 1294308
[2025-06-04 03:38:38] 2025-06-04 01:33:19,441 | INFO     | corecount: 4
[2025-06-04 03:38:38] 2025-06-04 01:33:19,441 | INFO     | event service: False
[2025-06-04 03:38:38] 2025-06-04 01:33:19,441 | INFO     | sizes: {0: 2405245, 1: 2405245, 5: 2405479, 12: 2405535, 15542: 2436459, 15543: 2436458, 15544: 2445605, 15546: 2445661, 15550: 2445831}
[2025-06-04 03:38:38] 2025-06-04 01:33:19,441 | INFO     | --------------------------------------------------
[2025-06-04 03:38:38] 2025-06-04 01:33:19,441 | INFO     | 
[2025-06-04 03:38:38] 2025-06-04 01:33:19,441 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-04 03:38:38] 2025-06-04 01:33:19,442 | INFO     | size of work directory /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6669511985: 3129371 B (within 2537553920 B limit)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,447 | INFO     | pfn file=/scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6669511985/HITS.44871837._097112.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,448 | INFO     | total size of present files: 0 B (workdir size: 3129371 B)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,448 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6669511985/HITS.44871837._097112.pool.root.1 since it does not exist
[2025-06-04 03:38:38] 2025-06-04 01:33:19,461 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,461 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,461 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,461 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,461 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,462 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,463 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:38:38] 2025-06-04 01:33:19,464 | INFO     | job 6669511985 has completed (purged errors)
[2025-06-04 03:38:38] 2025-06-04 01:33:19,464 | INFO     | overall cleanup function is called
[2025-06-04 03:38:38] 2025-06-04 01:33:19,905 | INFO     | number of running child processes to parent process 1294308: 1
[2025-06-04 03:38:38] 2025-06-04 01:33:19,905 | INFO     | maximum number of monitored processes: 6
[2025-06-04 03:38:38] 2025-06-04 01:33:19,905 | INFO     | aborting job monitoring since job object (job id=6669511985) has expired
[2025-06-04 03:38:38] 2025-06-04 01:33:20,472 | INFO     | --- collectZombieJob: --- 10, [1294308]
[2025-06-04 03:38:38] 2025-06-04 01:33:20,473 | INFO     | zombie collector waiting for pid 1294308
[2025-06-04 03:38:38] 2025-06-04 01:33:20,473 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:38:38] 2025-06-04 01:33:20,473 | INFO     | collected zombie processes
[2025-06-04 03:38:38] 2025-06-04 01:33:20,473 | INFO     | will attempt to kill all subprocesses of pid=1294308
[2025-06-04 03:38:38] 2025-06-04 01:33:20,807 | INFO     | process IDs to be killed: [1294308] (in reverse order)
[2025-06-04 03:38:38] 2025-06-04 01:33:20,890 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:38:38] 2025-06-04 01:33:20,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:38:38] 2025-06-04 01:33:20,900 | INFO     | did not find any defunct processes belonging to 1294308
[2025-06-04 03:38:38] 2025-06-04 01:33:20,908 | INFO     | did not find any defunct processes belonging to 1294308
[2025-06-04 03:38:38] 2025-06-04 01:33:20,909 | INFO     | ready for new job
[2025-06-04 03:38:38] 2025-06-04 01:33:20,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:38:38] 2025-06-04 01:33:20,911 | INFO     | **************************************
[2025-06-04 03:38:38] 2025-06-04 01:33:20,912 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:38:38] 2025-06-04 01:33:20,912 | INFO     | **************************************
[2025-06-04 03:38:38] 2025-06-04 01:33:20,912 | INFO     | 
[2025-06-04 03:38:38] 2025-06-04 01:33:20,915 | INFO     | architecture information:
[2025-06-04 03:38:38] 2025-06-04 01:33:20,915 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:38:38] 2025-06-04 01:33:20,932 | INFO     | cat /etc/os-release:
[2025-06-04 03:38:38] NAME="CentOS Linux"
[2025-06-04 03:38:38] VERSION="7 (Core)"
[2025-06-04 03:38:38] ID="centos"
[2025-06-04 03:38:38] ID_LIKE="rhel fedora"
[2025-06-04 03:38:38] VERSION_ID="7"
[2025-06-04 03:38:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:38:38] ANSI_COLOR="0;31"
[2025-06-04 03:38:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:38:38] HOME_URL="https://www.centos.org/"
[2025-06-04 03:38:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:38:38] 
[2025-06-04 03:38:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:38:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:38:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:38:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:38:38] 
[2025-06-04 03:38:38] 2025-06-04 01:33:20,933 | INFO     | **************************************
[2025-06-04 03:38:38] 2025-06-04 01:33:21,435 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-04 03:38:38] 2025-06-04 01:33:21,450 | INFO     | sufficient remaining disk space (1649756078080 B)
[2025-06-04 03:38:38] 2025-06-04 01:33:21,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:38:38] 2025-06-04 01:33:21,451 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:38:38] 2025-06-04 01:33:21,451 | INFO     | update_server=False
[2025-06-04 03:38:38] 2025-06-04 01:33:21,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:38:38] 2025-06-04 01:33:21,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:38:38] 2025-06-04 01:33:21,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:38:38] 2025-06-04 01:33:21,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:38:38] 2025-06-04 01:33:21,452 | INFO     | aborting loop
[2025-06-04 03:38:38] 2025-06-04 01:33:21,773 | INFO     | all data control threads have been joined
[2025-06-04 03:38:38] 2025-06-04 01:33:21,837 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:38:38] 2025-06-04 01:33:21,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:38:38] 2025-06-04 01:33:21,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:38:38] 2025-06-04 01:33:22,299 | INFO     | all job control threads have been joined
[2025-06-04 03:38:38] 2025-06-04 01:33:22,455 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:22,456 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:22,778 | INFO     | [data] control thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:22,798 | INFO     | all payload control threads have been joined
[2025-06-04 03:38:38] 2025-06-04 01:33:23,041 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,104 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,166 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,304 | INFO     | [job] control thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,438 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,456 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,542 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,547 | INFO     | [job] validate thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,803 | INFO     | [payload] control thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:23,950 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:24,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:38:38] 2025-06-04 01:33:25,452 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:25,456 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:38:38] 2025-06-04 01:33:25,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23207034156864)>', '<ExcThread(monitor, started 23206798792448)>']
[2025-06-04 03:38:38] 2025-06-04 01:33:25,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:38:38] 2025-06-04 01:33:25,858 | INFO     | [monitor] control thread has ended
[2025-06-04 03:38:38] 2025-06-04 01:33:30,630 | INFO     | all workflow threads have been joined
[2025-06-04 03:38:38] 2025-06-04 01:33:30,631 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:38:38] 2025-06-04 01:33:30,631 | INFO     | traces error code: 0
[2025-06-04 03:38:38] 2025-06-04 01:33:30,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:38:38] 2025-06-04 01:33:30,772 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:38:38] 2025-06-04 01:33:30,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:38:38] 2025-06-04 01:33:30,777 [wrapper] pilotpid: 1287477
[2025-06-04 03:38:38] 2025-06-04 01:33:30,780 [wrapper] Pilot exit status: 0
[2025-06-04 03:38:38] 2025-06-04 01:33:30,790 [wrapper] pandaids: 6669511985
[2025-06-04 03:38:38] 2025-06-04 01:33:30,852 [wrapper] cleanup supervisor_pilot 1638376 1287478
[2025-06-04 03:38:38] 2025-06-04 01:33:30,854 [wrapper] Test setup, not cleaning
[2025-06-04 03:38:38] 2025-06-04 01:33:30,858 [wrapper] apfmon messages muted
[2025-06-04 03:38:38] 2025-06-04 01:33:30,860 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:38:38] 2025-06-04 01:33:30,863 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:38:38]  *** Error codes and diagnostics ***
[2025-06-04 03:38:38]     "exeErrorCode": 0,
[2025-06-04 03:38:38]     "exeErrorDiag": "",
[2025-06-04 03:38:38]     "pilotErrorCode": 0,
[2025-06-04 03:38:38]     "pilotErrorDiag": "",
[2025-06-04 03:38:38]  *** Listing of results directory ***
[2025-06-04 03:38:38] total 413628
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc    495897 May 29 09:47 pilot3.tar.gz
[2025-06-04 03:38:38] -rwx------ 1 boinc boinc     37140 May 29 09:50 runpilot2-wrapper.sh
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc      5111 May 29 09:50 queuedata.json
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc       100 Jun  3 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:38:38] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 23:13 run_atlas
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc       105 Jun  3 23:13 job.xml
[2025-06-04 03:38:38] -rw-r--r-- 2 boinc boinc 223395294 Jun  3 23:13 EVNT.44871834._003824.pool.root.1
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc      6421 Jun  3 23:13 init_data.xml
[2025-06-04 03:38:38] drwxrwx--x 2 boinc boinc      4096 Jun  3 23:13 shared
[2025-06-04 03:38:38] -rw-r--r-- 2 boinc boinc    508877 Jun  3 23:13 input.tar.gz
[2025-06-04 03:38:38] -rw-r--r-- 2 boinc boinc     15093 Jun  3 23:13 start_atlas.sh
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc         0 Jun  3 23:13 boinc_lockfile
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc      2559 Jun  3 23:13 pandaJob.out
[2025-06-04 03:38:38] -rw------- 1 boinc boinc    986853 Jun  3 23:13 agis_schedconf.cvmfs.json
[2025-06-04 03:38:38] drwx------ 4 boinc boinc      4096 Jun  3 23:13 pilot3
[2025-06-04 03:38:38] -rw------- 1 boinc boinc 192720404 Jun  4 03:32 HITS.44871837._097112.pool.root.1
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc       529 Jun  4 03:32 boinc_task_state.xml
[2025-06-04 03:38:38] -rw------- 1 boinc boinc      1038 Jun  4 03:33 memory_monitor_summary.json
[2025-06-04 03:38:38] -rw------- 1 boinc boinc        95 Jun  4 03:33 pilot_heartbeat.json
[2025-06-04 03:38:38] -rw------- 1 boinc boinc   1603667 Jun  4 03:33 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:38:38] -rw------- 1 boinc boinc    360715 Jun  4 03:33 log.44871837._097112.job.log.tgz.1
[2025-06-04 03:38:38] -rw------- 1 boinc boinc      7730 Jun  4 03:33 heartbeat.json
[2025-06-04 03:38:38] -rw------- 1 boinc boinc      4364 Jun  4 03:33 pilotlog.txt
[2025-06-04 03:38:38] -rw------- 1 boinc boinc   1443430 Jun  4 03:33 log.44871837._097112.job.log.1
[2025-06-04 03:38:38] -rw------- 1 boinc boinc       357 Jun  4 03:33 output.list
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc       620 Jun  4 03:33 runtime_log
[2025-06-04 03:38:38] -rw------- 1 boinc boinc   1822720 Jun  4 03:33 result.tar.gz
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc      9026 Jun  4 03:33 runtime_log.err
[2025-06-04 03:38:38] -rw------- 1 boinc boinc       665 Jun  4 03:33 pggKDmJDne7n9Rq4apOajLDm4fhM0noT9bVof3QYDmSrUKDmSZjsAn.diag
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc        26 Jun  4 03:38 wrapper_checkpoint.txt
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc      8192 Jun  4 03:38 boinc_mmap_file
[2025-06-04 03:38:38] -rw-r--r-- 1 boinc boinc     21111 Jun  4 03:38 stderr.txt
[2025-06-04 03:38:38] HITS file was successfully produced:
[2025-06-04 03:38:38] -rw------- 1 boinc boinc 192720404 Jun  4 03:32 shared/HITS.pool.root.1
[2025-06-04 03:38:38]  *** Contents of shared directory: ***
[2025-06-04 03:38:38] total 408664
[2025-06-04 03:38:38] -rw-r--r-- 2 boinc boinc 223395294 Jun  3 23:13 ATLAS.root_0
[2025-06-04 03:38:38] -rw-r--r-- 2 boinc boinc    508877 Jun  3 23:13 input.tar.gz
[2025-06-04 03:38:38] -rw-r--r-- 2 boinc boinc     15093 Jun  3 23:13 start_atlas.sh
[2025-06-04 03:38:38] -rw------- 1 boinc boinc 192720404 Jun  4 03:32 HITS.pool.root.1
[2025-06-04 03:38:38] -rw------- 1 boinc boinc   1822720 Jun  4 03:33 result.tar.gz
03:38:40 (1283877): run_atlas exited; CPU time 60093.063935
03:38:40 (1283877): called boinc_finish(0)

</stderr_txt>
]]>

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