Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:51:34 (2870592): wrapper (7.7.26015): starting
14:51:34 (2870592): wrapper: running run_atlas (--nthreads 12)
[2025-05-29 14:51:34] Arguments: --nthreads 12
[2025-05-29 14:51:34] Threads: 12
[2025-05-29 14:51:34] Checking for CVMFS
[2025-05-29 14:51:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 14:51:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 14:51:34] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 14:51:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 14:51:35] 2.12.6.0 34032 23182 407024 146572 2 346 25476232 29414400 11043 16776704 0 66080971 99.453 91997440 32288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-29 14:51:35] CVMFS is ok
[2025-05-29 14:51:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 14:51:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 14:51:35] Further information can be found at the LHC@home message board.
[2025-05-29 14:51:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 14:51:35] Checking for apptainer binary...
[2025-05-29 14:51:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 14:51:35] Running /usr/bin/apptainer --version
[2025-05-29 14:51:35] apptainer version 1.4.1-1.el9
[2025-05-29 14:51:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 14:51:35] c6-5-37-4.aglt2.org
[2025-05-29 14:51:35] apptainer works
[2025-05-29 14:51:35] Set ATHENA_PROC_NUMBER=12
[2025-05-29 14:51:35] Set ATHENA_CORE_NUMBER=12
[2025-05-29 14:51:35] Starting ATLAS job with PandaID=6669511560
[2025-05-29 14:51:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:47:08 (3262874): wrapper (7.7.26015): starting
15:47:08 (3262874): wrapper: running run_atlas (--nthreads 12)
[2025-05-29 15:47:08] Arguments: --nthreads 12
[2025-05-29 15:47:08] Threads: 12
[2025-05-29 15:47:08] This job has been restarted, cleaning up previous attempt
[2025-05-29 15:47:08] Checking for CVMFS
[2025-05-29 15:47:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 15:47:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 15:47:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 15:47:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 15:47:09] 2.12.6.0 34032 23238 414492 146573 3 561 26174194 29414400 12595 16776704 0 66376791 99.456 92011942 32288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-29 15:47:09] CVMFS is ok
[2025-05-29 15:47:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 15:47:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 15:47:09] Further information can be found at the LHC@home message board.
[2025-05-29 15:47:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 15:47:09] Checking for apptainer binary...
[2025-05-29 15:47:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 15:47:09] Running /usr/bin/apptainer --version
[2025-05-29 15:47:09] apptainer version 1.4.1-1.el9
[2025-05-29 15:47:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 15:47:09] c6-5-37-4.aglt2.org
[2025-05-29 15:47:09] apptainer works
[2025-05-29 15:47:09] Set ATHENA_PROC_NUMBER=12
[2025-05-29 15:47:09] Set ATHENA_CORE_NUMBER=12
[2025-05-29 15:47:09] Starting ATLAS job with PandaID=6669511560
[2025-05-29 15:47:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 17:41:23]  *** The last 200 lines of the pilot log: ***
[2025-05-29 17:41:23] 2025-05-29 21:41:08,771 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-29 17:41:23] 2025-05-29 21:41:08,772 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6669511560/memory_monitor_summary.json (trf name=prmon)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,772 | INFO     | extracted standard info from prmon json
[2025-05-29 17:41:23] 2025-05-29 21:41:08,772 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 17:41:23] 2025-05-29 21:41:08,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 17:41:23] 2025-05-29 21:41:08,773 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 17:41:23] 2025-05-29 21:41:08,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 17:41:23] 2025-05-29 21:41:08,775 | INFO     | fitting pss+swap vs Time
[2025-05-29 17:41:23] 2025-05-29 21:41:08,775 | INFO     | sum of square deviations: 435608265.5625
[2025-05-29 17:41:23] 2025-05-29 21:41:08,776 | INFO     | sum of deviations: -11442213524.062502
[2025-05-29 17:41:23] 2025-05-29 21:41:08,776 | INFO     | mean x: 1748551462.5625
[2025-05-29 17:41:23] 2025-05-29 21:41:08,776 | INFO     | mean y: 2374755.0803571427
[2025-05-29 17:41:23] 2025-05-29 21:41:08,776 | INFO     | -- intersect: 45931942153.47791
[2025-05-29 17:41:23] 2025-05-29 21:41:08,776 | INFO     | intersect: 45931942153.47791
[2025-05-29 17:41:23] 2025-05-29 21:41:08,777 | INFO     | chi2: 2.6385134425268175
[2025-05-29 17:41:23] 2025-05-29 21:41:08,777 | INFO     | sum of square deviations: 379832610.5420554
[2025-05-29 17:41:23] 2025-05-29 21:41:08,777 | INFO     | sum of deviations: -1847186370.3364491
[2025-05-29 17:41:23] 2025-05-29 21:41:08,777 | INFO     | mean x: 1748551310.0654206
[2025-05-29 17:41:23] 2025-05-29 21:41:08,777 | INFO     | mean y: 2400317.476635514
[2025-05-29 17:41:23] 2025-05-29 21:41:08,778 | INFO     | -- intersect: 8505883320.627493
[2025-05-29 17:41:23] 2025-05-29 21:41:08,778 | INFO     | intersect: 8505883320.627493
[2025-05-29 17:41:23] 2025-05-29 21:41:08,778 | INFO     | chi2: 1.9684714536539043
[2025-05-29 17:41:23] 2025-05-29 21:41:08,778 | INFO     | current chi2=1.9684714536539043 (change=25.394677854331345 %)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,778 | INFO     | sum of square deviations: 329027143.1470599
[2025-05-29 17:41:23] 2025-05-29 21:41:08,778 | INFO     | sum of deviations: -1340611293.617646
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | mean x: 1748551157.5588236
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | mean y: 2401821.18627451
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | -- intersect: 7126821426.421854
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | intersect: 7126821426.421854
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | chi2: 1.97005329730184
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | current chi2=1.97005329730184 (change=-0.08035898336242303 %)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | right removable region: 101
[2025-05-29 17:41:23] 2025-05-29 21:41:08,779 | INFO     | sum of square deviations: 379828340.5420554
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | sum of deviations: -28644939709.700935
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | mean x: 1748551615.0654206
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | mean y: 2420977.2429906544
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | -- intersect: 131870294557.63321
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | intersect: 131870294557.63321
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | chi2: 1.033846985176322
[2025-05-29 17:41:23] 2025-05-29 21:41:08,780 | INFO     | current chi2=1.033846985176322 (change=60.817065832863804 %)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | sum of square deviations: 329025253.01960844
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | sum of deviations: -26337351219.56863
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | mean x: 1748551767.5686274
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | mean y: 2413753.0098039214
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | -- intersect: 139968029174.35245
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | intersect: 139968029174.35245
[2025-05-29 17:41:23] 2025-05-29 21:41:08,781 | INFO     | chi2: 0.9761850244545325
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | current chi2=0.9761850244545325 (change=5.577417311127062 %)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | left removable region: 20
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | sum of square deviations: 164754783.5555558
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | sum of deviations: -5817550892.851852
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | mean x: 1748551737.074074
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | mean y: 2404809.641975309
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | -- intersect: 61744397968.72261
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | intersect: 61744397968.72261
[2025-05-29 17:41:23] 2025-05-29 21:41:08,782 | INFO     | chi2: 0.1738532838380297
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | -- intersect: 61744397968.72261
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | current memory leak: -35.31 B/s (using 81 data points, chi2=0.17)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | ..............................
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | . Timing measurements:
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | . get job = 0 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | . initial setup = 2 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,783 | INFO     | . payload setup = 8 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,784 | INFO     | . stage-in = 0 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,784 | INFO     | . payload execution = 6786 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,784 | INFO     | . stage-out = 0 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,784 | INFO     | . log creation = 0 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,784 | INFO     | ..............................
[2025-05-29 17:41:23] 2025-05-29 21:41:08,864 | INFO     | 
[2025-05-29 17:41:23] 2025-05-29 21:41:08,864 | INFO     | job summary report
[2025-05-29 17:41:23] 2025-05-29 21:41:08,864 | INFO     | --------------------------------------------------
[2025-05-29 17:41:23] 2025-05-29 21:41:08,864 | INFO     | PanDA job id: 6669511560
[2025-05-29 17:41:23] 2025-05-29 21:41:08,864 | INFO     | task id: 44871837
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | errors: (none)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | pilot state: finished 
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | transexitcode: 0
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | exeerrorcode: 0
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | exeerrordiag: 
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | exitcode: 0
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | exitmsg: OK
[2025-05-29 17:41:23] 2025-05-29 21:41:08,865 | INFO     | cpuconsumptiontime: 50726 s
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | nevents: 400
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | neventsw: 0
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | pid: 3273649
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | pgrp: 3273649
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | corecount: 12
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | event service: False
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | sizes: {0: 2404405, 1: 2405261, 2: 2405261, 6: 2405495, 12: 2405523, 6798: 2432589, 6800: 2441530, 6801: 2441586, 6808: 2441756}
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | --------------------------------------------------
[2025-05-29 17:41:23] 2025-05-29 21:41:08,866 | INFO     | 
[2025-05-29 17:41:23] 2025-05-29 21:41:08,867 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-29 17:41:23] 2025-05-29 21:41:08,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,886 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,886 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,886 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 17:41:23] 2025-05-29 21:41:08,887 | INFO     | job 6669511560 has completed (purged errors)
[2025-05-29 17:41:23] 2025-05-29 21:41:08,888 | INFO     | overall cleanup function is called
[2025-05-29 17:41:23] 2025-05-29 21:41:09,896 | INFO     | --- collectZombieJob: --- 10, [3273649]
[2025-05-29 17:41:23] 2025-05-29 21:41:09,896 | INFO     | zombie collector waiting for pid 3273649
[2025-05-29 17:41:23] 2025-05-29 21:41:09,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 17:41:23] 2025-05-29 21:41:09,896 | INFO     | collected zombie processes
[2025-05-29 17:41:23] 2025-05-29 21:41:09,896 | INFO     | will attempt to kill all subprocesses of pid=3273649
[2025-05-29 17:41:23] 2025-05-29 21:41:10,175 | INFO     | process IDs to be killed: [3273649] (in reverse order)
[2025-05-29 17:41:23] 2025-05-29 21:41:10,267 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 17:41:23] 2025-05-29 21:41:10,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 17:41:23] 2025-05-29 21:41:10,284 | INFO     | did not find any defunct processes belonging to 3273649
[2025-05-29 17:41:23] 2025-05-29 21:41:10,296 | INFO     | did not find any defunct processes belonging to 3273649
[2025-05-29 17:41:23] 2025-05-29 21:41:10,297 | INFO     | ready for new job
[2025-05-29 17:41:23] 2025-05-29 21:41:10,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 17:41:23] 2025-05-29 21:41:10,299 | INFO     | **************************************
[2025-05-29 17:41:23] 2025-05-29 21:41:10,300 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 17:41:23] 2025-05-29 21:41:10,300 | INFO     | **************************************
[2025-05-29 17:41:23] 2025-05-29 21:41:10,300 | INFO     | 
[2025-05-29 17:41:23] 2025-05-29 21:41:10,315 | INFO     | architecture information:
[2025-05-29 17:41:23] 2025-05-29 21:41:10,315 | INFO     | executing command: cat /etc/os-release
[2025-05-29 17:41:23] 2025-05-29 21:41:10,329 | INFO     | cat /etc/os-release:
[2025-05-29 17:41:23] NAME="CentOS Linux"
[2025-05-29 17:41:23] VERSION="7 (Core)"
[2025-05-29 17:41:23] ID="centos"
[2025-05-29 17:41:23] ID_LIKE="rhel fedora"
[2025-05-29 17:41:23] VERSION_ID="7"
[2025-05-29 17:41:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 17:41:23] ANSI_COLOR="0;31"
[2025-05-29 17:41:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 17:41:23] HOME_URL="https://www.centos.org/"
[2025-05-29 17:41:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 17:41:23] 
[2025-05-29 17:41:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 17:41:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 17:41:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 17:41:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 17:41:23] 
[2025-05-29 17:41:23] 2025-05-29 21:41:10,329 | INFO     | **************************************
[2025-05-29 17:41:23] 2025-05-29 21:41:10,832 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-29 17:41:23] 2025-05-29 21:41:10,845 | INFO     | sufficient remaining disk space (75278319616 B)
[2025-05-29 17:41:23] 2025-05-29 21:41:10,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 17:41:23] 2025-05-29 21:41:10,845 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 17:41:23] 2025-05-29 21:41:10,846 | INFO     | update_server=False
[2025-05-29 17:41:23] 2025-05-29 21:41:10,846 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 17:41:23] 2025-05-29 21:41:10,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 17:41:23] 2025-05-29 21:41:10,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 17:41:23] 2025-05-29 21:41:10,846 | INFO     | aborting loop
[2025-05-29 17:41:23] 2025-05-29 21:41:11,535 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 17:41:23] 2025-05-29 21:41:11,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 17:41:23] 2025-05-29 21:41:11,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 17:41:23] 2025-05-29 21:41:11,749 | INFO     | all data control threads have been joined
[2025-05-29 17:41:23] 2025-05-29 21:41:11,788 | INFO     | all payload control threads have been joined
[2025-05-29 17:41:23] 2025-05-29 21:41:11,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 17:41:23] 2025-05-29 21:41:11,850 | INFO     | [job] job monitor thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:11,851 | INFO     | [job] retrieve thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:11,851 | INFO     | [job] queue monitor thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:11,859 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:11,959 | INFO     | [job] validate thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,363 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,433 | INFO     | all job control threads have been joined
[2025-05-29 17:41:23] 2025-05-29 21:41:12,461 | INFO     | [payload] failed_post thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,547 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 17:41:23] 2025-05-29 21:41:12,591 | INFO     | [data] copytool_in thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,751 | INFO     | [data] control thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,789 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,793 | INFO     | [payload] control thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:12,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:13,295 | INFO     | [payload] validate_post thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:13,435 | INFO     | [job] control thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:13,835 | INFO     | [data] copytool_out thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:16,552 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 17:41:23] 2025-05-29 21:41:17,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096074680128)>', '<ExcThread(monitor, started 140095432673024)>']
[2025-05-29 17:41:23] 2025-05-29 21:41:18,571 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 17:41:23] 2025-05-29 21:41:18,571 | INFO     | [monitor] control thread has ended
[2025-05-29 17:41:23] 2025-05-29 21:41:22,636 | INFO     | all workflow threads have been joined
[2025-05-29 17:41:23] 2025-05-29 21:41:22,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 17:41:23] 2025-05-29 21:41:22,641 | INFO     | traces error code: 0
[2025-05-29 17:41:23] 2025-05-29 21:41:22,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 17:41:23] 2025-05-29 21:41:22,809 [wrapper] ==== pilot stdout END ====
[2025-05-29 17:41:23] 2025-05-29 21:41:22,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 17:41:23] 2025-05-29 21:41:22,814 [wrapper] pilotpid: 3266658
[2025-05-29 17:41:23] 2025-05-29 21:41:22,817 [wrapper] Pilot exit status: 0
[2025-05-29 17:41:23] 2025-05-29 21:41:22,827 [wrapper] pandaids: 6669511560 6669511560
[2025-05-29 17:41:23] 2025-05-29 21:41:22,887 [wrapper] cleanup supervisor_pilot 3795738 3266659
[2025-05-29 17:41:23] 2025-05-29 21:41:22,890 [wrapper] Test setup, not cleaning
[2025-05-29 17:41:23] 2025-05-29 21:41:22,892 [wrapper] apfmon messages muted
[2025-05-29 17:41:23] 2025-05-29 21:41:22,894 [wrapper] ==== wrapper stdout END ====
[2025-05-29 17:41:23] 2025-05-29 21:41:22,896 [wrapper] ==== wrapper stderr END ====
[2025-05-29 17:41:23]  *** Error codes and diagnostics ***
[2025-05-29 17:41:23]     "exeErrorCode": 0,
[2025-05-29 17:41:23]     "exeErrorDiag": "",
[2025-05-29 17:41:23]     "pilotErrorCode": 0,
[2025-05-29 17:41:23]     "pilotErrorDiag": "",
[2025-05-29 17:41:23]  *** Listing of results directory ***
[2025-05-29 17:41:23] total 649776
[2025-05-29 17:41:23] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas    495897 May 29 03:06 pilot3.tar.gz
[2025-05-29 17:41:23] -rwx------. 1 boincer umatlas     37140 May 29 03:16 runpilot2-wrapper.sh
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas      5111 May 29 03:16 queuedata.json
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas       100 May 29 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 17:41:23] -rwxr-xr-x. 1 boincer umatlas      7986 May 29 14:51 run_atlas
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas       105 May 29 14:51 job.xml
[2025-05-29 17:41:23] -rw-r--r--. 3 boincer umatlas 225526383 May 29 14:51 EVNT.44871834._003812.pool.root.1
[2025-05-29 17:41:23] -rw-r--r--. 3 boincer umatlas 225526383 May 29 14:51 ATLAS.root_0
[2025-05-29 17:41:23] -rw-r--r--. 2 boincer umatlas     15093 May 29 14:51 start_atlas.sh
[2025-05-29 17:41:23] drwxrwx--x. 2 boincer umatlas      4096 May 29 14:51 shared
[2025-05-29 17:41:23] -rw-r--r--. 2 boincer umatlas    508877 May 29 14:51 input.tar.gz
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas         0 May 29 14:51 boinc_lockfile
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas   1603667 May 29 14:51 agis_ddmendpoints.agis.ALL.json
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas      2558 May 29 15:47 pandaJob.out
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas    992471 May 29 15:47 agis_schedconf.cvmfs.json
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas      6841 May 29 17:37 init_data.xml
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas        96 May 29 17:40 pilot_heartbeat.json
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas 208401446 May 29 17:40 HITS.44871837._096782.pool.root.1
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas       529 May 29 17:40 boinc_task_state.xml
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas      1041 May 29 17:40 memory_monitor_summary.json
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas      8192 May 29 17:40 boinc_mmap_file
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas        27 May 29 17:40 wrapper_checkpoint.txt
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas    396853 May 29 17:41 log.44871837._096782.job.log.tgz.1
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas      7718 May 29 17:41 heartbeat.json
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas      4353 May 29 17:41 pilotlog.txt
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas    636572 May 29 17:41 log.44871837._096782.job.log.1
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas       357 May 29 17:41 output.list
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas       620 May 29 17:41 runtime_log
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas   1054720 May 29 17:41 result.tar.gz
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas      8751 May 29 17:41 runtime_log.err
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas       779 May 29 17:41 IawKDmjgme7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7nUKDmmWdx8n.diag
[2025-05-29 17:41:23] -rw-r--r--. 1 boincer umatlas     23071 May 29 17:41 stderr.txt
[2025-05-29 17:41:23] HITS file was successfully produced:
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas 208401446 May 29 17:40 shared/HITS.pool.root.1
[2025-05-29 17:41:23]  *** Contents of shared directory: ***
[2025-05-29 17:41:23] total 425316
[2025-05-29 17:41:23] -rw-r--r--. 3 boincer umatlas 225526383 May 29 14:51 ATLAS.root_0
[2025-05-29 17:41:23] -rw-r--r--. 2 boincer umatlas     15093 May 29 14:51 start_atlas.sh
[2025-05-29 17:41:23] -rw-r--r--. 2 boincer umatlas    508877 May 29 14:51 input.tar.gz
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas 208401446 May 29 17:40 HITS.pool.root.1
[2025-05-29 17:41:23] -rw-------. 1 boincer umatlas   1054720 May 29 17:41 result.tar.gz
17:41:25 (3262874): run_atlas exited; CPU time 50831.125973
17:41:25 (3262874): called boinc_finish(0)

</stderr_txt>
]]>

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