Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:06:09 (482030): wrapper (7.7.26015): starting
06:06:09 (482030): wrapper: running run_atlas (--nthreads 12)
[2025-05-29 06:06:09] Arguments: --nthreads 12
[2025-05-29 06:06:09] Threads: 12
[2025-05-29 06:06:09] Checking for CVMFS
[2025-05-29 06:06:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 06:06:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 06:06:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 06:06:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 06:06:09] 2.11.5.0 3710071 15062 230976 146562 1 702 43593101 45568000 12010 130560 0 159328201 99.810 92167779 26060 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-29 06:06:09] CVMFS is ok
[2025-05-29 06:06:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 06:06:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 06:06:09] Further information can be found at the LHC@home message board.
[2025-05-29 06:06:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 06:06:09] Checking for apptainer binary...
[2025-05-29 06:06:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 06:06:09] Running /usr/bin/apptainer --version
[2025-05-29 06:06:09] apptainer version 1.4.0-1.el9
[2025-05-29 06:06:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 06:06:10] wns0041.triumf.lcg
[2025-05-29 06:06:10] apptainer works
[2025-05-29 06:06:10] Set ATHENA_PROC_NUMBER=12
[2025-05-29 06:06:10] Set ATHENA_CORE_NUMBER=12
[2025-05-29 06:06:10] Starting ATLAS job with PandaID=6670433212
[2025-05-29 06:06:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 06:09:09]  *** The last 200 lines of the pilot log: ***
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | found no stored workdir sizes
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | will not add max space = 0 B to job metrics
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | WARNING  | wrong length of table data, x=[1748523998.0], y=[1617.0] (must be same and length>=4)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | ..............................
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . Timing measurements:
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . get job = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . initial setup = 2 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . payload setup = 3 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . stage-in = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . payload execution = 13 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . stage-out = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . log creation = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | ..............................
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-29 06:09:09] 2025-05-29 13:08:54,794 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6670433212/pilotlog.txt
[2025-05-29 06:09:09] 2025-05-29 13:08:54,802 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-29 06:09:09] - Log from pilotlog.txt -
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | extracted standard info from prmon json
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | found no stored workdir sizes
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | will not add max space = 0 B to job metrics
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | WARNING  | wrong length of table data, x=[1748523998.0], y=[1617.0] (must be same and length>=4)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | ..............................
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . Timing measurements:
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . get job = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . initial setup = 2 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . payload setup = 3 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . stage-in = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . payload execution = 13 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . stage-out = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . log creation = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | ..............................
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-29 06:09:09] 2025-05-29 13:08:54,794 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6670433212/pilotlog.txt
[2025-05-29 06:09:09] 2025-05-29 13:08:54,802 | WARNING  | 
[2025-05-29 06:09:09] [begin log extracts]
[2025-05-29 06:09:09] - Log from pilotlog.txt -
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | extracted standard info from prmon json
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | WARNING  | found no stored workdir sizes
[2025-05-29 06:09:09] 2025-05-29 13:08:54,792 | INFO     | will not add max space = 0 B to job metrics
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | WARNING  | wrong length of table data, x=[1748523998.0], y=[1617.0] (must be same and length>=4)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | ..............................
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . Timing measurements:
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . get job = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . initial setup = 2 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . payload setup = 3 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . stage-in = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . payload execution = 13 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . stage-out = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | . log creation = 0 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | ..............................
[2025-05-29 06:09:09] 2025-05-29 13:08:54,793 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-29 06:09:09] 2025-05-29 13:08:54,794 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6670433212/pilotlog.txt
[2025-05-29 06:09:09] [end log extracts]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,802 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,803 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | 
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | job summary report
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | --------------------------------------------------
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | PanDA job id: 6670433212
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | task id: 44871837
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-29 06:06:45,078 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | pilot state: failed 
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | transexitcode: 65
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | exeerrorcode: 65
[2025-05-29 06:09:09] 2025-05-29 13:08:54,864 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | exitcode: 65
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | cpuconsumptiontime: 14 s
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | nevents: 0
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | neventsw: 0
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | pid: 491936
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | pgrp: 491936
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | corecount: 12
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | event service: False
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | sizes: {0: 2405181, 3: 2405387, 11: 2405415, 21: 2428587, 23: 2432822, 25: 2432850, 144: 2433120}
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | --------------------------------------------------
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | 
[2025-05-29 06:09:09] 2025-05-29 13:08:54,865 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-29 06:09:09] 2025-05-29 13:08:54,878 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,879 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,880 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,880 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,880 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 06:09:09] 2025-05-29 13:08:54,880 | INFO     | job 6670433212 has completed (purged errors)
[2025-05-29 06:09:09] 2025-05-29 13:08:54,880 | INFO     | overall cleanup function is called
[2025-05-29 06:09:09] 2025-05-29 13:08:55,886 | INFO     | --- collectZombieJob: --- 10, [491936]
[2025-05-29 06:09:09] 2025-05-29 13:08:55,886 | INFO     | zombie collector waiting for pid 491936
[2025-05-29 06:09:09] 2025-05-29 13:08:55,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 06:09:09] 2025-05-29 13:08:55,886 | INFO     | collected zombie processes
[2025-05-29 06:09:09] 2025-05-29 13:08:55,886 | INFO     | will attempt to kill all subprocesses of pid=491936
[2025-05-29 06:09:09] 2025-05-29 13:08:56,032 | INFO     | process IDs to be killed: [491936] (in reverse order)
[2025-05-29 06:09:09] 2025-05-29 13:08:56,087 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 06:09:09] 2025-05-29 13:08:56,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 06:09:09] 2025-05-29 13:08:56,093 | INFO     | did not find any defunct processes belonging to 491936
[2025-05-29 06:09:09] 2025-05-29 13:08:56,098 | INFO     | did not find any defunct processes belonging to 491936
[2025-05-29 06:09:09] 2025-05-29 13:08:56,098 | INFO     | ready for new job
[2025-05-29 06:09:09] 2025-05-29 13:08:56,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 06:09:09] 2025-05-29 13:08:56,099 | INFO     | **************************************
[2025-05-29 06:09:09] 2025-05-29 13:08:56,100 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 06:09:09] 2025-05-29 13:08:56,100 | INFO     | **************************************
[2025-05-29 06:09:09] 2025-05-29 13:08:56,100 | INFO     | 
[2025-05-29 06:09:09] 2025-05-29 13:08:56,101 | INFO     | architecture information:
[2025-05-29 06:09:09] 2025-05-29 13:08:56,102 | INFO     | executing command: cat /etc/os-release
[2025-05-29 06:09:09] 2025-05-29 13:08:56,111 | INFO     | cat /etc/os-release:
[2025-05-29 06:09:09] NAME="CentOS Linux"
[2025-05-29 06:09:09] VERSION="7 (Core)"
[2025-05-29 06:09:09] ID="centos"
[2025-05-29 06:09:09] ID_LIKE="rhel fedora"
[2025-05-29 06:09:09] VERSION_ID="7"
[2025-05-29 06:09:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 06:09:09] ANSI_COLOR="0;31"
[2025-05-29 06:09:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 06:09:09] HOME_URL="https://www.centos.org/"
[2025-05-29 06:09:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 06:09:09] 
[2025-05-29 06:09:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 06:09:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 06:09:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 06:09:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 06:09:09] 
[2025-05-29 06:09:09] 2025-05-29 13:08:56,111 | INFO     | **************************************
[2025-05-29 06:09:09] 2025-05-29 13:08:56,615 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-29 06:09:09] 2025-05-29 13:08:56,627 | INFO     | sufficient remaining disk space (2003355828224 B)
[2025-05-29 06:09:09] 2025-05-29 13:08:56,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 06:09:09] 2025-05-29 13:08:56,628 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 06:09:09] 2025-05-29 13:08:56,628 | INFO     | update_server=False
[2025-05-29 06:09:09] 2025-05-29 13:08:56,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 06:09:09] 2025-05-29 13:08:56,628 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 06:09:09] 2025-05-29 13:08:56,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 06:09:09] 2025-05-29 13:08:56,629 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 06:09:09] 2025-05-29 13:08:56,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 06:09:09] 2025-05-29 13:08:56,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 06:09:09] 2025-05-29 13:08:56,786 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-29 06:09:09] 2025-05-29 13:08:56,786 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-29 06:09:09] 2025-05-29 13:08:56,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 06:09:09] 2025-05-29 13:08:56,787 | INFO     | will abort loop
[2025-05-29 06:09:09] 2025-05-29 13:08:56,852 | INFO     | all payload control threads have been joined
[2025-05-29 06:09:09] 2025-05-29 13:08:57,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 06:09:09] 2025-05-29 13:08:57,380 | INFO     | all data control threads have been joined
[2025-05-29 06:09:09] 2025-05-29 13:08:57,633 | INFO     | [job] retrieve thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:57,634 | INFO     | [job] queue monitor thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:57,723 | INFO     | all job control threads have been joined
[2025-05-29 06:09:09] 2025-05-29 13:08:57,791 | INFO     | [job] job monitor thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:57,857 | INFO     | [payload] control thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:57,930 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,026 | INFO     | [data] copytool_in thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,145 | INFO     | [job] validate thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,279 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,327 | INFO     | [payload] failed_post thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,385 | INFO     | [data] control thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,405 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,533 | INFO     | [payload] validate_post thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,728 | INFO     | [job] control thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:58,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 06:09:09] 2025-05-29 13:08:58,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:08:59,104 | INFO     | [data] copytool_out thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:09:02,869 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 06:09:09] 2025-05-29 13:09:04,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140469647509312)>', '<ExcThread(monitor, started 140468943824640)>']
[2025-05-29 06:09:09] 2025-05-29 13:09:04,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 06:09:09] 2025-05-29 13:09:04,664 | INFO     | [monitor] control thread has ended
[2025-05-29 06:09:09] 2025-05-29 13:09:09,069 | INFO     | all workflow threads have been joined
[2025-05-29 06:09:09] 2025-05-29 13:09:09,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 06:09:09] 2025-05-29 13:09:09,070 | INFO     | traces error code: 0
[2025-05-29 06:09:09] 2025-05-29 13:09:09,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 06:09:09] 2025-05-29 13:09:09,174 [wrapper] ==== pilot stdout END ====
[2025-05-29 06:09:09] 2025-05-29 13:09:09,176 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 06:09:09] 2025-05-29 13:09:09,178 [wrapper] pilotpid: 485605
[2025-05-29 06:09:09] 2025-05-29 13:09:09,180 [wrapper] Pilot exit status: 0
[2025-05-29 06:09:09] 2025-05-29 13:09:09,187 [wrapper] pandaids: 6670433212
[2025-05-29 06:09:09] 2025-05-29 13:09:09,222 [wrapper] cleanup supervisor_pilot  485611 485606
[2025-05-29 06:09:09] 2025-05-29 13:09:09,225 [wrapper] Test setup, not cleaning
[2025-05-29 06:09:09] 2025-05-29 13:09:09,227 [wrapper] apfmon messages muted
[2025-05-29 06:09:09] 2025-05-29 13:09:09,228 [wrapper] ==== wrapper stdout END ====
[2025-05-29 06:09:09] 2025-05-29 13:09:09,230 [wrapper] ==== wrapper stderr END ====
[2025-05-29 06:09:09]  *** Error codes and diagnostics ***
[2025-05-29 06:09:09]     "exeErrorCode": 65,
[2025-05-29 06:09:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-29 06:09:09]     "pilotErrorCode": 1305,
[2025-05-29 06:09:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-29 06:09:09]  *** Listing of results directory ***
[2025-05-29 06:09:09] total 222876
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc    495897 May 29 03:07 pilot3.tar.gz
[2025-05-29 06:09:09] -rwx------. 1 boinc boinc     37140 May 29 03:15 runpilot2-wrapper.sh
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc      5111 May 29 03:15 queuedata.json
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc       100 May 29 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 06:09:09] -rwxr-xr-x. 1 boinc boinc      7986 May 29 06:06 run_atlas
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc       105 May 29 06:06 job.xml
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc      6602 May 29 06:06 init_data.xml
[2025-05-29 06:09:09] -rw-r--r--. 2 boinc boinc 224195702 May 29 06:06 EVNT.44871834._002623.pool.root.1
[2025-05-29 06:09:09] -rw-r--r--. 2 boinc boinc     15093 May 29 06:06 start_atlas.sh
[2025-05-29 06:09:09] drwxrwx--x. 2 boinc boinc      4096 May 29 06:06 shared
[2025-05-29 06:09:09] -rw-r--r--. 2 boinc boinc    508881 May 29 06:06 input.tar.gz
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc         0 May 29 06:06 boinc_lockfile
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc      2559 May 29 06:06 pandaJob.out
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc    992820 May 29 06:06 agis_schedconf.cvmfs.json
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc   1603667 May 29 06:06 agis_ddmendpoints.agis.ALL.json
[2025-05-29 06:09:09] drwx------. 4 boinc boinc      4096 May 29 06:06 pilot3
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc       521 May 29 06:06 boinc_task_state.xml
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc       985 May 29 06:06 memory_monitor_summary.json
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc     19950 May 29 06:06 log.44871837._098645.job.log.tgz.1
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc        95 May 29 06:08 pilot_heartbeat.json
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc      8342 May 29 06:08 heartbeat.json
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc      8192 May 29 06:09 boinc_mmap_file
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc        22 May 29 06:09 wrapper_checkpoint.txt
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc      4661 May 29 06:09 pilotlog.txt
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc     73598 May 29 06:09 log.44871837._098645.job.log.1
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc       188 May 29 06:09 output.list
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc       620 May 29 06:09 runtime_log
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc    112640 May 29 06:09 result.tar.gz
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc      8484 May 29 06:09 runtime_log.err
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc       644 May 29 06:09 Nw8KDmJTpe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZJeKDmoHHAGo.diag
[2025-05-29 06:09:09] -rw-r--r--. 1 boinc boinc     21495 May 29 06:09 stderr.txt
[2025-05-29 06:09:09] No HITS result produced
[2025-05-29 06:09:09]  *** Contents of shared directory: ***
[2025-05-29 06:09:09] total 219576
[2025-05-29 06:09:09] -rw-r--r--. 2 boinc boinc 224195702 May 29 06:06 ATLAS.root_0
[2025-05-29 06:09:09] -rw-r--r--. 2 boinc boinc     15093 May 29 06:06 start_atlas.sh
[2025-05-29 06:09:09] -rw-r--r--. 2 boinc boinc    508881 May 29 06:06 input.tar.gz
[2025-05-29 06:09:09] -rw-------. 1 boinc boinc    112640 May 29 06:09 result.tar.gz
06:09:10 (482030): run_atlas exited; CPU time 17.833031
06:09:10 (482030): called boinc_finish(0)

</stderr_txt>
]]>

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