Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:36:02 (1927526): wrapper (7.7.26015): starting
08:36:02 (1927526): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 08:36:02] Arguments: --nthreads 4
[2025-06-05 08:36:02] Threads: 4
[2025-06-05 08:36:02] Checking for CVMFS
[2025-06-05 08:36:02] No cvmfs_config command found, will try listing directly
[2025-06-05 08:36:02] CVMFS is ok
[2025-06-05 08:36:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:36:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:36:02] Further information can be found at the LHC@home message board.
[2025-06-05 08:36:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:36:02] Checking for apptainer binary...
[2025-06-05 08:36:02] which: no apptainer in ((null))
[2025-06-05 08:36:02] apptainer is not installed, using version from CVMFS
[2025-06-05 08:36:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:36:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-05 08:36:03] apptainer works
[2025-06-05 08:36:03] Set ATHENA_PROC_NUMBER=4
[2025-06-05 08:36:03] Set ATHENA_CORE_NUMBER=4
[2025-06-05 08:36:03] Starting ATLAS job with PandaID=6669442854
[2025-06-05 08:36:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:55:36]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:55:36] 2025-06-05 09:54:09,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:55:36] 2025-06-05 09:54:10,586 | INFO     | PID=1931465 has CPU usage=20.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 11:55:36] 2025-06-05 09:54:10,586 | INFO     | .. there are 13 such processes running
[2025-06-05 11:55:36] 2025-06-05 09:54:11,553 | INFO     | monitor loop #821: job 0:6669442854 is in state 'finished'
[2025-06-05 11:55:36] 2025-06-05 09:54:11,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,056 | INFO     | monitor loop #822: job 0:6669442854 is in state 'finished'
[2025-06-05 11:55:36] 2025-06-05 09:54:14,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,080 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 11:55:36] 2025-06-05 09:54:14,081 | INFO     | using path: /scratch/boinc/var/slot84/slots/0/PanDA_Pilot-6669442854/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,082 | INFO     | extracted standard info from prmon json
[2025-06-05 11:55:36] 2025-06-05 09:54:14,082 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:55:36] 2025-06-05 09:54:14,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:55:36] 2025-06-05 09:54:14,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:55:36] 2025-06-05 09:54:14,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:55:36] 2025-06-05 09:54:14,086 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:55:36] 2025-06-05 09:54:14,086 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 11:55:36] 2025-06-05 09:54:14,087 | INFO     | sum of deviations: 26042733172.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,087 | INFO     | mean x: 1749111297.5
[2025-06-05 11:55:36] 2025-06-05 09:54:14,087 | INFO     | mean y: 2309458.494845361
[2025-06-05 11:55:36] 2025-06-05 09:54:14,088 | INFO     | -- intersect: -20117873793.79185
[2025-06-05 11:55:36] 2025-06-05 09:54:14,088 | INFO     | intersect: -20117873793.79185
[2025-06-05 11:55:36] 2025-06-05 09:54:14,088 | INFO     | chi2: 1.6023531721821125
[2025-06-05 11:55:36] 2025-06-05 09:54:14,088 | INFO     | sum of square deviations: 2093397390.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,089 | INFO     | sum of deviations: 25255491755.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,089 | INFO     | mean x: 1749111145.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | mean y: 2308754.486772487
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | -- intersect: -21099591110.36694
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | intersect: -21099591110.36694
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | chi2: 1.603532229446641
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | current chi2=1.603532229446641 (change=-0.0735828583234764 %)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | right removable region: 188
[2025-06-05 11:55:36] 2025-06-05 09:54:14,090 | INFO     | sum of square deviations: 2093397390.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | sum of deviations: -4156441851.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | mean x: 1749111450.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | mean y: 2336166.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | -- intersect: 3475198063.875632
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | intersect: 3475198063.875632
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | chi2: 0.005205718314440102
[2025-06-05 11:55:36] 2025-06-05 09:54:14,092 | INFO     | current chi2=0.005205718314440102 (change=99.67512041634674 %)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,093 | INFO     | sum of square deviations: 1931608310.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | sum of deviations: -4344202626.499997
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | mean x: 1749111602.5
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | mean y: 2336337.6467391304
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | -- intersect: 3936102401.0274243
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | intersect: 3936102401.0274243
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | chi2: 0.004731727106011092
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | current chi2=0.004731727106011092 (change=9.105202775075432 %)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,094 | INFO     | left removable region: 20
[2025-06-05 11:55:36] 2025-06-05 09:54:14,095 | INFO     | sum of square deviations: 1470248962.0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | sum of deviations: -3091182533.5
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | mean x: 1749111724.5
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | mean y: 2334974.0773809524
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | -- intersect: 3679823448.24674
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | intersect: 3679823448.24674
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | chi2: 0.004230583919812916
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | -- intersect: 3679823448.24674
[2025-06-05 11:55:36] 2025-06-05 09:54:14,096 | INFO     | current memory leak: -2.10 B/s (using 168 data points, chi2=0.00)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | ..............................
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . Timing measurements:
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . get job = 0 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . initial setup = 1 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . payload setup = 9 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . stage-in = 0 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . payload execution = 11831 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . stage-out = 1 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | . log creation = 0 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,097 | INFO     | ..............................
[2025-06-05 11:55:36] 2025-06-05 09:54:14,358 | INFO     | 
[2025-06-05 11:55:36] 2025-06-05 09:54:14,358 | INFO     | job summary report
[2025-06-05 11:55:36] 2025-06-05 09:54:14,358 | INFO     | --------------------------------------------------
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | PanDA job id: 6669442854
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | task id: 44871837
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | errors: (none)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | pilot state: finished 
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | transexitcode: 0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | exeerrorcode: 0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | exeerrordiag: 
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | exitcode: 0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | exitmsg: OK
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | cpuconsumptiontime: 45387 s
[2025-06-05 11:55:36] 2025-06-05 09:54:14,359 | INFO     | nevents: 400
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | neventsw: 0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | pid: 1938840
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | pgrp: 1938840
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | corecount: 4
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | event service: False
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | sizes: {0: 2397403, 7: 2397609, 11: 2397637, 11845: 2427411, 11847: 2436374, 11851: 2436430, 11860: 2436728}
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | --------------------------------------------------
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | 
[2025-06-05 11:55:36] 2025-06-05 09:54:14,360 | INFO     | executing command: ls -lF /scratch/boinc/var/slot84/slots/0
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:55:36] 2025-06-05 09:54:14,393 | INFO     | job 6669442854 has completed (purged errors)
[2025-06-05 11:55:36] 2025-06-05 09:54:14,394 | INFO     | overall cleanup function is called
[2025-06-05 11:55:36] 2025-06-05 09:54:15,402 | INFO     | --- collectZombieJob: --- 10, [1938840]
[2025-06-05 11:55:36] 2025-06-05 09:54:15,402 | INFO     | zombie collector waiting for pid 1938840
[2025-06-05 11:55:36] 2025-06-05 09:54:15,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:55:36] 2025-06-05 09:54:15,402 | INFO     | collected zombie processes
[2025-06-05 11:55:36] 2025-06-05 09:54:15,403 | INFO     | will attempt to kill all subprocesses of pid=1938840
[2025-06-05 11:55:36] 2025-06-05 09:54:16,053 | INFO     | process IDs to be killed: [1938840] (in reverse order)
[2025-06-05 11:55:36] 2025-06-05 09:54:16,288 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:55:36] 2025-06-05 09:54:16,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:55:36] 2025-06-05 09:54:16,314 | INFO     | did not find any defunct processes belonging to 1938840
[2025-06-05 11:55:36] 2025-06-05 09:54:16,337 | INFO     | did not find any defunct processes belonging to 1938840
[2025-06-05 11:55:36] 2025-06-05 09:54:16,337 | INFO     | ready for new job
[2025-06-05 11:55:36] 2025-06-05 09:54:16,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:55:36] 2025-06-05 09:54:16,339 | INFO     | **************************************
[2025-06-05 11:55:36] 2025-06-05 09:54:16,339 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:55:36] 2025-06-05 09:54:16,339 | INFO     | **************************************
[2025-06-05 11:55:36] 2025-06-05 09:54:16,339 | INFO     | 
[2025-06-05 11:55:36] 2025-06-05 09:54:16,347 | INFO     | architecture information:
[2025-06-05 11:55:36] 2025-06-05 09:54:16,348 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:55:36] 2025-06-05 09:54:16,367 | INFO     | cat /etc/os-release:
[2025-06-05 11:55:36] NAME="CentOS Linux"
[2025-06-05 11:55:36] VERSION="7 (Core)"
[2025-06-05 11:55:36] ID="centos"
[2025-06-05 11:55:36] ID_LIKE="rhel fedora"
[2025-06-05 11:55:36] VERSION_ID="7"
[2025-06-05 11:55:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:55:36] ANSI_COLOR="0;31"
[2025-06-05 11:55:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:55:36] HOME_URL="https://www.centos.org/"
[2025-06-05 11:55:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:55:36] 
[2025-06-05 11:55:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:55:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:55:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:55:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:55:36] 
[2025-06-05 11:55:36] 2025-06-05 09:54:16,368 | INFO     | **************************************
[2025-06-05 11:55:36] 2025-06-05 09:54:16,870 | INFO     | executing command: df -mP /scratch/boinc/var/slot84/slots/0
[2025-06-05 11:55:36] 2025-06-05 09:54:16,895 | INFO     | sufficient remaining disk space (3279658418176 B)
[2025-06-05 11:55:36] 2025-06-05 09:54:16,895 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:55:36] 2025-06-05 09:54:16,896 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:55:36] 2025-06-05 09:54:16,896 | INFO     | update_server=False
[2025-06-05 11:55:36] 2025-06-05 09:54:16,896 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:55:36] 2025-06-05 09:54:16,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:55:36] 2025-06-05 09:54:16,896 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:55:36] 2025-06-05 09:54:16,897 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:55:36] 2025-06-05 09:54:16,897 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:55:36] 2025-06-05 09:54:16,897 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:55:36] 2025-06-05 09:54:17,495 | INFO     | all data control threads have been joined
[2025-06-05 11:55:36] 2025-06-05 09:54:17,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:55:36] 2025-06-05 09:54:17,567 | INFO     | aborting loop
[2025-06-05 11:55:36] 2025-06-05 09:54:17,624 | INFO     | all payload control threads have been joined
[2025-06-05 11:55:36] 2025-06-05 09:54:17,901 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:17,992 | INFO     | all job control threads have been joined
[2025-06-05 11:55:36] 2025-06-05 09:54:18,435 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,500 | INFO     | [data] control thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,550 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,572 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,629 | INFO     | [payload] control thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,745 | INFO     | [job] validate thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,901 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,921 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:18,997 | INFO     | [job] control thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:19,057 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:19,066 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:19,142 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:19,197 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:55:36] 2025-06-05 09:54:19,387 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:19,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:55:36] 2025-06-05 09:54:20,202 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:23,805 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:55:36] 2025-06-05 09:54:23,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23443036251968)>', '<ExcThread(monitor, started 23442585777920)>']
[2025-06-05 11:55:36] 2025-06-05 09:54:24,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:55:36] 2025-06-05 09:54:24,936 | INFO     | [monitor] control thread has ended
[2025-06-05 11:55:36] 2025-06-05 09:54:28,979 | INFO     | all workflow threads have been joined
[2025-06-05 11:55:36] 2025-06-05 09:54:28,979 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:55:36] 2025-06-05 09:54:28,979 | INFO     | traces error code: 0
[2025-06-05 11:55:36] 2025-06-05 09:54:28,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:55:36] 2025-06-05 09:54:29,114 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:55:36] 2025-06-05 09:54:29,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:55:36] 2025-06-05 09:54:29,121 [wrapper] pilotpid: 1931465
[2025-06-05 11:55:36] 2025-06-05 09:54:29,124 [wrapper] Pilot exit status: 0
[2025-06-05 11:55:36] 2025-06-05 09:54:29,137 [wrapper] pandaids: 6669442854
[2025-06-05 11:55:36] 2025-06-05 09:54:29,283 [wrapper] cleanup supervisor_pilot 2629765 1931466
[2025-06-05 11:55:36] 2025-06-05 09:54:29,287 [wrapper] Test setup, not cleaning
[2025-06-05 11:55:36] 2025-06-05 09:54:29,291 [wrapper] apfmon messages muted
[2025-06-05 11:55:36] 2025-06-05 09:54:29,295 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:55:36] 2025-06-05 09:54:29,299 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:55:36]  *** Error codes and diagnostics ***
[2025-06-05 11:55:36]     "exeErrorCode": 0,
[2025-06-05 11:55:36]     "exeErrorDiag": "",
[2025-06-05 11:55:36]     "pilotErrorCode": 0,
[2025-06-05 11:55:36]     "pilotErrorDiag": "",
[2025-06-05 11:55:36]  *** Listing of results directory ***
[2025-06-05 11:55:36] total 415444
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc    495897 May 29 08:04 pilot3.tar.gz
[2025-06-05 11:55:36] -rwx------ 1 boinc boinc     37140 May 29 08:19 runpilot2-wrapper.sh
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc      5111 May 29 08:19 queuedata.json
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc       100 Jun  5 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:55:36] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 08:35 run_atlas
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc       105 Jun  5 08:35 job.xml
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc      6685 Jun  5 08:36 init_data.xml
[2025-06-05 11:55:36] -rw-r--r-- 2 boinc boinc 225092888 Jun  5 08:36 EVNT.44871834._003788.pool.root.1
[2025-06-05 11:55:36] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:36 start_atlas.sh
[2025-06-05 11:55:36] drwxrwx--x 2 boinc boinc      4096 Jun  5 08:36 shared
[2025-06-05 11:55:36] -rw-r--r-- 2 boinc boinc    508877 Jun  5 08:36 input.tar.gz
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc         0 Jun  5 08:36 boinc_lockfile
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc      2559 Jun  5 08:36 pandaJob.out
[2025-06-05 11:55:36] -rw------- 1 boinc boinc    986926 Jun  5 08:36 agis_schedconf.cvmfs.json
[2025-06-05 11:55:36] drwx------ 4 boinc boinc      4096 Jun  5 08:36 pilot3
[2025-06-05 11:55:36] -rw------- 1 boinc boinc 193655803 Jun  5 11:53 HITS.44871837._096124.pool.root.1
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc       529 Jun  5 11:53 boinc_task_state.xml
[2025-06-05 11:55:36] -rw------- 1 boinc boinc      1031 Jun  5 11:53 memory_monitor_summary.json
[2025-06-05 11:55:36] -rw------- 1 boinc boinc        95 Jun  5 11:53 pilot_heartbeat.json
[2025-06-05 11:55:36] -rw------- 1 boinc boinc   1598969 Jun  5 11:54 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:55:36] -rw------- 1 boinc boinc    316668 Jun  5 11:54 log.44871837._096124.job.log.tgz.1
[2025-06-05 11:55:36] -rw------- 1 boinc boinc      7706 Jun  5 11:54 heartbeat.json
[2025-06-05 11:55:36] -rw------- 1 boinc boinc      4487 Jun  5 11:54 pilotlog.txt
[2025-06-05 11:55:36] -rw------- 1 boinc boinc   1098020 Jun  5 11:54 log.44871837._096124.job.log.1
[2025-06-05 11:55:36] -rw------- 1 boinc boinc       357 Jun  5 11:54 output.list
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc       620 Jun  5 11:54 runtime_log
[2025-06-05 11:55:36] -rw------- 1 boinc boinc   1433600 Jun  5 11:54 result.tar.gz
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc      9026 Jun  5 11:54 runtime_log.err
[2025-06-05 11:55:36] -rw------- 1 boinc boinc       666 Jun  5 11:54 mXKKDmqmle7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlydKDmKBA2pm.diag
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc        27 Jun  5 11:55 wrapper_checkpoint.txt
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc      8192 Jun  5 11:55 boinc_mmap_file
[2025-06-05 11:55:36] -rw-r--r-- 1 boinc boinc     20953 Jun  5 11:55 stderr.txt
[2025-06-05 11:55:36] HITS file was successfully produced:
[2025-06-05 11:55:36] -rw------- 1 boinc boinc 193655803 Jun  5 11:53 shared/HITS.pool.root.1
[2025-06-05 11:55:36]  *** Contents of shared directory: ***
[2025-06-05 11:55:36] total 410864
[2025-06-05 11:55:36] -rw-r--r-- 2 boinc boinc 225092888 Jun  5 08:36 ATLAS.root_0
[2025-06-05 11:55:36] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:36 start_atlas.sh
[2025-06-05 11:55:36] -rw-r--r-- 2 boinc boinc    508877 Jun  5 08:36 input.tar.gz
[2025-06-05 11:55:36] -rw------- 1 boinc boinc 193655803 Jun  5 11:53 HITS.pool.root.1
[2025-06-05 11:55:36] -rw------- 1 boinc boinc   1433600 Jun  5 11:54 result.tar.gz
11:55:37 (1927526): run_atlas exited; CPU time 46032.132866
11:55:37 (1927526): called boinc_finish(0)

</stderr_txt>
]]>

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