Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:29:59 (17255): wrapper (7.7.26015): starting
00:29:59 (17255): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 00:29:59] Arguments: --nthreads 8
[2025-05-30 00:29:59] Threads: 8
[2025-05-30 00:29:59] Checking for CVMFS
[2025-05-30 00:30:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 00:30:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 00:30:00] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 00:30:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 00:30:01] 2.11.2.0 25755 25351 100436 146579 3 16 22201508 25165825 4636 130560 0 15104289 99.786 14908755 2202 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-30 00:30:01] CVMFS is ok
[2025-05-30 00:30:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 00:30:01] Checking for apptainer binary...
[2025-05-30 00:30:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 00:30:01] Running /usr/bin/apptainer --version
[2025-05-30 00:30:01] apptainer version 1.3.2-1.el7
[2025-05-30 00:30:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 00:30:15] cg-vwn458.simple-grid.lan
[2025-05-30 00:30:15] apptainer works
[2025-05-30 00:30:15] Set ATHENA_PROC_NUMBER=8
[2025-05-30 00:30:15] Set ATHENA_CORE_NUMBER=8
[2025-05-30 00:30:15] Starting ATLAS job with PandaID=6669089876
[2025-05-30 00:30:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 06:07:51]  *** The last 200 lines of the pilot log: ***
[2025-05-30 06:07:51] 2025-05-30 03:39:10,356 | INFO     | extracted standard info from prmon json
[2025-05-30 06:07:51] 2025-05-30 03:39:10,356 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 06:07:51] 2025-05-30 03:39:10,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 06:07:51] 2025-05-30 03:39:10,356 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 06:07:51] 2025-05-30 03:39:10,356 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 06:07:51] 2025-05-30 03:39:10,362 | INFO     | fitting pss+swap vs Time
[2025-05-30 06:07:51] 2025-05-30 03:39:10,362 | INFO     | sum of square deviations: 7720081493.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,367 | INFO     | sum of deviations: 105296179832.50002
[2025-05-30 06:07:51] 2025-05-30 03:39:10,367 | INFO     | mean x: 1748567363.5
[2025-05-30 06:07:51] 2025-05-30 03:39:10,367 | INFO     | mean y: 2458676.9897260275
[2025-05-30 06:07:51] 2025-05-30 03:39:10,368 | INFO     | -- intersect: -23846701946.933807
[2025-05-30 06:07:51] 2025-05-30 03:39:10,368 | INFO     | intersect: -23846701946.933807
[2025-05-30 06:07:51] 2025-05-30 03:39:10,368 | INFO     | chi2: 7.1550431985457426
[2025-05-30 06:07:51] 2025-05-30 03:39:10,369 | INFO     | sum of square deviations: 7330250928.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,371 | INFO     | sum of deviations: 122703587725.00006
[2025-05-30 06:07:51] 2025-05-30 03:39:10,371 | INFO     | mean x: 1748567211.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,371 | INFO     | mean y: 2465381.400696864
[2025-05-30 06:07:51] 2025-05-30 03:39:10,371 | INFO     | -- intersect: -29267401677.09807
[2025-05-30 06:07:51] 2025-05-30 03:39:10,372 | INFO     | intersect: -29267401677.09807
[2025-05-30 06:07:51] 2025-05-30 03:39:10,372 | INFO     | chi2: 6.439055305295217
[2025-05-30 06:07:51] 2025-05-30 03:39:10,372 | INFO     | current chi2=6.439055305295217 (change=10.006758497224018 %)
[2025-05-30 06:07:51] 2025-05-30 03:39:10,372 | INFO     | right removable region: 286
[2025-05-30 06:07:51] 2025-05-30 03:39:10,373 | INFO     | sum of square deviations: 7330250928.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,375 | INFO     | sum of deviations: 3116692093.000004
[2025-05-30 06:07:51] 2025-05-30 03:39:10,375 | INFO     | mean x: 1748567516.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,375 | INFO     | mean y: 2498622.8362369337
[2025-05-30 06:07:51] 2025-05-30 03:39:10,376 | INFO     | -- intersect: -740961131.0961945
[2025-05-30 06:07:51] 2025-05-30 03:39:10,376 | INFO     | intersect: -740961131.0961945
[2025-05-30 06:07:51] 2025-05-30 03:39:10,376 | INFO     | chi2: 2.3585646616230123
[2025-05-30 06:07:51] 2025-05-30 03:39:10,376 | INFO     | current chi2=2.3585646616230123 (change=67.03633232986786 %)
[2025-05-30 06:07:51] 2025-05-30 03:39:10,377 | INFO     | sum of square deviations: 6953769450.5
[2025-05-30 06:07:51] 2025-05-30 03:39:10,399 | INFO     | sum of deviations: -47263169629.5
[2025-05-30 06:07:51] 2025-05-30 03:39:10,399 | INFO     | mean x: 1748567668.5
[2025-05-30 06:07:51] 2025-05-30 03:39:10,400 | INFO     | mean y: 2518927.5354609927
[2025-05-30 06:07:51] 2025-05-30 03:39:10,400 | INFO     | -- intersect: 11887130707.270626
[2025-05-30 06:07:51] 2025-05-30 03:39:10,400 | INFO     | intersect: 11887130707.270626
[2025-05-30 06:07:51] 2025-05-30 03:39:10,400 | INFO     | chi2: 0.9498738271598245
[2025-05-30 06:07:51] 2025-05-30 03:39:10,400 | INFO     | current chi2=0.9498738271598245 (change=59.72661497835796 %)
[2025-05-30 06:07:51] 2025-05-30 03:39:10,401 | INFO     | sum of square deviations: 6590404498.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,403 | INFO     | sum of deviations: -42836172191.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,403 | INFO     | mean x: 1748567821.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,403 | INFO     | mean y: 2517050.3465703973
[2025-05-30 06:07:51] 2025-05-30 03:39:10,403 | INFO     | -- intersect: 11367821303.026094
[2025-05-30 06:07:51] 2025-05-30 03:39:10,403 | INFO     | intersect: 11367821303.026094
[2025-05-30 06:07:51] 2025-05-30 03:39:10,404 | INFO     | chi2: 0.9369754050748538
[2025-05-30 06:07:51] 2025-05-30 03:39:10,404 | INFO     | current chi2=0.9369754050748538 (change=1.3579089891904608 %)
[2025-05-30 06:07:51] 2025-05-30 03:39:10,404 | INFO     | left removable region: 30
[2025-05-30 06:07:51] 2025-05-30 03:39:10,405 | INFO     | sum of square deviations: 5202255680.0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | sum of deviations: 5805548699.5
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | mean x: 1748568095.5
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | mean y: 2511217.91015625
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | -- intersect: -1948834094.0559824
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | intersect: -1948834094.0559824
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | chi2: 0.026944619136318352
[2025-05-30 06:07:51] 2025-05-30 03:39:10,407 | INFO     | -- intersect: -1948834094.0559824
[2025-05-30 06:07:51] 2025-05-30 03:39:10,408 | INFO     | current memory leak: 1.12 B/s (using 256 data points, chi2=0.03)
[2025-05-30 06:07:51] 2025-05-30 03:39:10,408 | INFO     | ..............................
[2025-05-30 06:07:51] 2025-05-30 03:39:10,408 | INFO     | . Timing measurements:
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . get job = 0 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . initial setup = 7 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . payload setup = 138 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . stage-in = 0 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . payload execution = 17911 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . stage-out = 1 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | . log creation = 0 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,409 | INFO     | ..............................
[2025-05-30 06:07:51] 2025-05-30 03:39:10,597 | INFO     | 
[2025-05-30 06:07:51] 2025-05-30 03:39:10,597 | INFO     | job summary report
[2025-05-30 06:07:51] 2025-05-30 03:39:10,597 | INFO     | --------------------------------------------------
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | PanDA job id: 6669089876
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | task id: 44871837
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | errors: (none)
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | pilot state: finished 
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | transexitcode: 0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | exeerrorcode: 0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | exeerrordiag: 
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | exitcode: 0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | exitmsg: OK
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | cpuconsumptiontime: 67472 s
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | nevents: 400
[2025-05-30 06:07:51] 2025-05-30 03:39:10,598 | INFO     | neventsw: 0
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | pid: 28858
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | pgrp: 28858
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | corecount: 8
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | event service: False
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | sizes: {0: 2405008, 1: 2405263, 12: 2405263, 23: 2405291, 33: 2405319, 44: 2405375, 55: 2405531, 66: 2405559, 76: 2405587, 87: 2405643, 95: 2405877, 98: 2406185, 1
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | --------------------------------------------------
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | 
[2025-05-30 06:07:51] 2025-05-30 03:39:10,599 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 06:07:51] 2025-05-30 03:39:11,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 06:07:51] 2025-05-30 03:39:11,036 | INFO     | job 6669089876 has completed (purged errors)
[2025-05-30 06:07:51] 2025-05-30 03:39:11,036 | INFO     | overall cleanup function is called
[2025-05-30 06:07:51] 2025-05-30 03:39:12,044 | INFO     | --- collectZombieJob: --- 10, [28858]
[2025-05-30 06:07:51] 2025-05-30 03:39:12,044 | INFO     | zombie collector waiting for pid 28858
[2025-05-30 06:07:51] 2025-05-30 03:39:12,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 06:07:51] 2025-05-30 03:39:12,045 | INFO     | collected zombie processes
[2025-05-30 06:07:51] 2025-05-30 03:39:12,045 | INFO     | will attempt to kill all subprocesses of pid=28858
[2025-05-30 06:07:51] 2025-05-30 03:39:12,151 | INFO     | process IDs to be killed: [28858] (in reverse order)
[2025-05-30 06:07:51] 2025-05-30 03:39:12,996 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 06:07:51] 2025-05-30 03:39:12,996 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 06:07:51] 2025-05-30 03:39:12,999 | INFO     | did not find any defunct processes belonging to 28858
[2025-05-30 06:07:51] 2025-05-30 03:39:13,002 | INFO     | did not find any defunct processes belonging to 28858
[2025-05-30 06:07:51] 2025-05-30 03:39:13,002 | INFO     | ready for new job
[2025-05-30 06:07:51] 2025-05-30 03:39:13,002 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 06:07:51] 2025-05-30 03:39:13,004 | INFO     | **************************************
[2025-05-30 06:07:51] 2025-05-30 03:39:13,004 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 06:07:51] 2025-05-30 03:39:13,004 | INFO     | **************************************
[2025-05-30 06:07:51] 2025-05-30 03:39:13,004 | INFO     | 
[2025-05-30 06:07:51] 2025-05-30 03:39:13,008 | INFO     | pilot is running in a VM
[2025-05-30 06:07:51] 2025-05-30 03:39:13,009 | INFO     | architecture information:
[2025-05-30 06:07:51] 2025-05-30 03:39:13,012 | INFO     | executing command: cat /etc/os-release
[2025-05-30 06:07:51] 2025-05-30 03:39:13,252 | INFO     | cat /etc/os-release:
[2025-05-30 06:07:51] NAME="CentOS Linux"
[2025-05-30 06:07:51] VERSION="7 (Core)"
[2025-05-30 06:07:51] ID="centos"
[2025-05-30 06:07:51] ID_LIKE="rhel fedora"
[2025-05-30 06:07:51] VERSION_ID="7"
[2025-05-30 06:07:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 06:07:51] ANSI_COLOR="0;31"
[2025-05-30 06:07:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 06:07:51] HOME_URL="https://www.centos.org/"
[2025-05-30 06:07:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 06:07:51] 
[2025-05-30 06:07:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 06:07:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 06:07:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 06:07:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 06:07:51] 
[2025-05-30 06:07:51] 2025-05-30 03:39:13,252 | INFO     | **************************************
[2025-05-30 06:07:51] 2025-05-30 03:39:13,755 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-05-30 06:07:51] 2025-05-30 03:39:13,886 | INFO     | sufficient remaining disk space (495352545280 B)
[2025-05-30 06:07:51] 2025-05-30 03:39:13,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 06:07:51] 2025-05-30 03:39:13,887 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 06:07:51] 2025-05-30 03:39:13,887 | INFO     | update_server=False
[2025-05-30 06:07:51] 2025-05-30 03:39:13,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 06:07:51] 2025-05-30 03:39:13,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 06:07:51] 2025-05-30 03:39:13,887 | INFO     | aborting loop
[2025-05-30 06:07:51] 2025-05-30 03:39:13,893 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 06:07:51] 2025-05-30 03:39:13,894 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 06:07:51] 2025-05-30 03:39:13,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 06:07:51] 2025-05-30 03:39:13,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 06:07:51] 2025-05-30 03:39:13,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 06:07:51] 2025-05-30 03:39:13,989 | INFO     | all payload control threads have been joined
[2025-05-30 06:07:51] 2025-05-30 03:39:14,239 | INFO     | all data control threads have been joined
[2025-05-30 06:07:51] 2025-05-30 03:39:14,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 06:07:51] 2025-05-30 03:39:14,892 | INFO     | [job] retrieve thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:14,893 | INFO     | [job] job monitor thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:14,930 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:14,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:14,995 | INFO     | [payload] control thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:15,034 | INFO     | [data] copytool_in thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:15,245 | INFO     | [data] control thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:15,443 | INFO     | all job control threads have been joined
[2025-05-30 06:07:51] 2025-05-30 03:39:15,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 06:07:51] 2025-05-30 03:39:15,620 | INFO     | [payload] validate_post thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:15,854 | INFO     | [payload] failed_post thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:15,901 | INFO     | [data] copytool_out thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:16,029 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:16,155 | INFO     | [job] validate thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:16,192 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:16,449 | INFO     | [job] control thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:16,618 | INFO     | [job] queue monitor thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:18,343 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 06:07:51] 2025-05-30 03:39:19,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622758823744)>', '<ExcThread(monitor, started 140622186931968)>']
[2025-05-30 06:07:51] 2025-05-30 03:39:19,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 06:07:51] 2025-05-30 03:39:19,928 | INFO     | [monitor] control thread has ended
[2025-05-30 06:07:51] 2025-05-30 03:39:24,754 | INFO     | all workflow threads have been joined
[2025-05-30 06:07:51] 2025-05-30 03:39:24,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 06:07:51] 2025-05-30 03:39:24,755 | INFO     | traces error code: 0
[2025-05-30 06:07:51] 2025-05-30 03:39:24,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 06:07:51] 2025-05-30 03:39:25,034 [wrapper] ==== pilot stdout END ====
[2025-05-30 06:07:51] 2025-05-30 03:39:25,128 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 06:07:51] 2025-05-30 03:39:25,204 [wrapper] pilotpid: 22230
[2025-05-30 06:07:51] 2025-05-30 03:39:25,285 [wrapper] Pilot exit status: 0
[2025-05-30 06:07:51] 2025-05-30 03:39:25,727 [wrapper] pandaids: 6669089876
[2025-05-30 06:07:51] 2025-05-30 03:39:26,271 [wrapper] cleanup supervisor_pilot  8510 22231
[2025-05-30 06:07:51] 2025-05-30 03:39:26,300 [wrapper] Test setup, not cleaning
[2025-05-30 06:07:51] 2025-05-30 03:39:26,307 [wrapper] apfmon messages muted
[2025-05-30 06:07:51] 2025-05-30 03:39:26,321 [wrapper] ==== wrapper stdout END ====
[2025-05-30 06:07:51] 2025-05-30 03:39:26,333 [wrapper] ==== wrapper stderr END ====
[2025-05-30 06:07:51]  *** Error codes and diagnostics ***
[2025-05-30 06:07:51]     "exeErrorCode": 0,
[2025-05-30 06:07:51]     "exeErrorDiag": "",
[2025-05-30 06:07:51]     "pilotErrorCode": 0,
[2025-05-30 06:07:51]     "pilotErrorDiag": "",
[2025-05-30 06:07:51]  *** Listing of results directory ***
[2025-05-30 06:07:51] total 424560
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc    495897 May 29 03:22 pilot3.tar.gz
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc      5111 May 29 03:27 queuedata.json
[2025-05-30 06:07:51] -rwx------. 1 boinc boinc     37140 May 29 03:28 runpilot2-wrapper.sh
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc       100 May 30 00:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 06:07:51] -rwxr-xr-x. 1 boinc boinc      7986 May 30 00:29 run_atlas
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc       105 May 30 00:29 job.xml
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc      6372 May 30 00:29 init_data.xml
[2025-05-30 06:07:51] -rw-r--r--. 2 boinc boinc 223895748 May 30 00:29 EVNT.44871834._003617.pool.root.1
[2025-05-30 06:07:51] -rw-r--r--. 2 boinc boinc     15093 May 30 00:29 start_atlas.sh
[2025-05-30 06:07:51] drwxrwx--x. 2 boinc boinc        68 May 30 00:29 shared
[2025-05-30 06:07:51] -rw-r--r--. 2 boinc boinc    508879 May 30 00:29 input.tar.gz
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc         0 May 30 00:29 boinc_lockfile
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc      2559 May 30 00:30 pandaJob.out
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc    992366 May 30 00:33 agis_schedconf.cvmfs.json
[2025-05-30 06:07:51] drwx------. 4 boinc boinc      4096 May 30 00:33 pilot3
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc 203064578 May 30 05:36 HITS.44871837._093025.pool.root.1
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc       531 May 30 05:36 boinc_task_state.xml
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc      1019 May 30 05:37 memory_monitor_summary.json
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc   1603667 May 30 05:37 agis_ddmendpoints.agis.ALL.json
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc    413449 May 30 05:37 log.44871837._093025.job.log.tgz.1
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc        95 May 30 05:38 pilot_heartbeat.json
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc      7693 May 30 05:39 heartbeat.json
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc      4540 May 30 05:39 pilotlog.txt
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc   1566041 May 30 05:39 log.44871837._093025.job.log.1
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc       357 May 30 05:39 output.list
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc       620 May 30 05:39 runtime_log
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc   1996800 May 30 05:39 result.tar.gz
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc      8673 May 30 05:39 runtime_log.err
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc       657 May 30 05:39 opqLDmMFhe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIWdKDmER3eEm.diag
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc      8192 May 30 06:07 boinc_mmap_file
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc        28 May 30 06:07 wrapper_checkpoint.txt
[2025-05-30 06:07:51] -rw-r--r--. 1 boinc boinc     20520 May 30 06:07 stderr.txt
[2025-05-30 06:07:51] HITS file was successfully produced:
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc 203064578 May 30 05:36 shared/HITS.pool.root.1
[2025-05-30 06:07:51]  *** Contents of shared directory: ***
[2025-05-30 06:07:51] total 419428
[2025-05-30 06:07:51] -rw-r--r--. 2 boinc boinc 223895748 May 30 00:29 ATLAS.root_0
[2025-05-30 06:07:51] -rw-r--r--. 2 boinc boinc     15093 May 30 00:29 start_atlas.sh
[2025-05-30 06:07:51] -rw-r--r--. 2 boinc boinc    508879 May 30 00:29 input.tar.gz
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc 203064578 May 30 05:36 HITS.pool.root.1
[2025-05-30 06:07:51] -rw-------. 1 boinc boinc   1996800 May 30 05:39 result.tar.gz
06:07:53 (17255): run_atlas exited; CPU time 67710.242006
06:07:53 (17255): called boinc_finish(0)

</stderr_txt>
]]>

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