Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:27:43 (26897): wrapper (7.7.26015): starting
02:27:43 (26897): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 02:27:43] Arguments: --nthreads 8
[2025-05-30 02:27:43] Threads: 8
[2025-05-30 02:27:43] Checking for CVMFS
[2025-05-30 02:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 02:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 02:27:44] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 02:27:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 02:27:45] 2.11.2.0 11048 25337 96476 146581 0 14 23014936 25165824 4632 130560 0 13769864 99.754 15017918 5007 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-30 02:27:45] CVMFS is ok
[2025-05-30 02:27:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 02:27:45] Checking for apptainer binary...
[2025-05-30 02:27:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 02:27:45] Running /usr/bin/apptainer --version
[2025-05-30 02:27:45] apptainer version 1.3.2-1.el7
[2025-05-30 02:27:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 02:28:00] cg-vwn330.simple-grid.lan
[2025-05-30 02:28:00] apptainer works
[2025-05-30 02:28:00] Set ATHENA_PROC_NUMBER=8
[2025-05-30 02:28:00] Set ATHENA_CORE_NUMBER=8
[2025-05-30 02:28:00] Starting ATLAS job with PandaID=6669239047
[2025-05-30 02:28:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 08:06:38]  *** The last 200 lines of the pilot log: ***
[2025-05-30 08:06:38] 2025-05-30 05:52:02,829 | INFO     | extracted standard info from prmon json
[2025-05-30 08:06:38] 2025-05-30 05:52:02,829 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 08:06:38] 2025-05-30 05:52:02,829 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 08:06:38] 2025-05-30 05:52:02,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 08:06:38] 2025-05-30 05:52:02,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 08:06:38] 2025-05-30 05:52:02,836 | INFO     | fitting pss+swap vs Time
[2025-05-30 08:06:38] 2025-05-30 05:52:02,837 | INFO     | sum of square deviations: 8971993338.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,840 | INFO     | sum of deviations: 113998680752.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,840 | INFO     | mean x: 1748574878.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,840 | INFO     | mean y: 2464335.986970684
[2025-05-30 08:06:38] 2025-05-30 05:52:02,840 | INFO     | -- intersect: -22215032019.457756
[2025-05-30 08:06:38] 2025-05-30 05:52:02,840 | INFO     | intersect: -22215032019.457756
[2025-05-30 08:06:38] 2025-05-30 05:52:02,841 | INFO     | chi2: 8.039274582700779
[2025-05-30 08:06:38] 2025-05-30 05:52:02,841 | INFO     | sum of square deviations: 8540720135.5
[2025-05-30 08:06:38] 2025-05-30 05:52:02,849 | INFO     | sum of deviations: 132305034877.99995
[2025-05-30 08:06:38] 2025-05-30 05:52:02,849 | INFO     | mean x: 1748574725.5
[2025-05-30 08:06:38] 2025-05-30 05:52:02,849 | INFO     | mean y: 2470714.2317880793
[2025-05-30 08:06:38] 2025-05-30 05:52:02,849 | INFO     | -- intersect: -27084851709.841885
[2025-05-30 08:06:38] 2025-05-30 05:52:02,849 | INFO     | intersect: -27084851709.841885
[2025-05-30 08:06:38] 2025-05-30 05:52:02,850 | INFO     | chi2: 7.328232112513086
[2025-05-30 08:06:38] 2025-05-30 05:52:02,850 | INFO     | current chi2=7.328232112513086 (change=8.844609832306782 %)
[2025-05-30 08:06:38] 2025-05-30 05:52:02,850 | INFO     | right removable region: 301
[2025-05-30 08:06:38] 2025-05-30 05:52:02,851 | INFO     | sum of square deviations: 8540720135.5
[2025-05-30 08:06:38] 2025-05-30 05:52:02,853 | INFO     | sum of deviations: 5323895688.499996
[2025-05-30 08:06:38] 2025-05-30 05:52:02,854 | INFO     | mean x: 1748575030.5
[2025-05-30 08:06:38] 2025-05-30 05:52:02,854 | INFO     | mean y: 2502744.7649006625
[2025-05-30 08:06:38] 2025-05-30 05:52:02,854 | INFO     | -- intersect: -1087479237.808599
[2025-05-30 08:06:38] 2025-05-30 05:52:02,854 | INFO     | intersect: -1087479237.808599
[2025-05-30 08:06:38] 2025-05-30 05:52:02,855 | INFO     | chi2: 3.093611265006132
[2025-05-30 08:06:38] 2025-05-30 05:52:02,855 | INFO     | current chi2=3.093611265006132 (change=61.51877593952215 %)
[2025-05-30 08:06:38] 2025-05-30 05:52:02,855 | INFO     | sum of square deviations: 8123493708.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,858 | INFO     | sum of deviations: -62810236793.000015
[2025-05-30 08:06:38] 2025-05-30 05:52:02,858 | INFO     | mean x: 1748575183.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,858 | INFO     | mean y: 2527571.781144781
[2025-05-30 08:06:38] 2025-05-30 05:52:02,859 | INFO     | -- intersect: 13522378173.306759
[2025-05-30 08:06:38] 2025-05-30 05:52:02,859 | INFO     | intersect: 13522378173.306759
[2025-05-30 08:06:38] 2025-05-30 05:52:02,863 | INFO     | chi2: 1.0337867032332737
[2025-05-30 08:06:38] 2025-05-30 05:52:02,864 | INFO     | current chi2=1.0337867032332737 (change=66.5831736867811 %)
[2025-05-30 08:06:38] 2025-05-30 05:52:02,864 | INFO     | sum of square deviations: 7720081493.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,867 | INFO     | sum of deviations: -65959339955.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,867 | INFO     | mean x: 1748575335.5
[2025-05-30 08:06:38] 2025-05-30 05:52:02,867 | INFO     | mean y: 2528729.3630136987
[2025-05-30 08:06:38] 2025-05-30 05:52:02,867 | INFO     | -- intersect: 14942121672.228947
[2025-05-30 08:06:38] 2025-05-30 05:52:02,867 | INFO     | intersect: 14942121672.228947
[2025-05-30 08:06:38] 2025-05-30 05:52:02,868 | INFO     | chi2: 0.9887611867918609
[2025-05-30 08:06:38] 2025-05-30 05:52:02,873 | INFO     | current chi2=0.9887611867918609 (change=4.355397133721195 %)
[2025-05-30 08:06:38] 2025-05-30 05:52:02,873 | INFO     | left removable region: 30
[2025-05-30 08:06:38] 2025-05-30 05:52:02,874 | INFO     | sum of square deviations: 6171352920.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,876 | INFO     | sum of deviations: -17061059012.000002
[2025-05-30 08:06:38] 2025-05-30 05:52:02,877 | INFO     | mean x: 1748575610.0
[2025-05-30 08:06:38] 2025-05-30 05:52:02,877 | INFO     | mean y: 2524551.7675276753
[2025-05-30 08:06:38] 2025-05-30 05:52:02,877 | INFO     | -- intersect: 4836562088.735013
[2025-05-30 08:06:38] 2025-05-30 05:52:02,877 | INFO     | intersect: 4836562088.735013
[2025-05-30 08:06:38] 2025-05-30 05:52:02,877 | INFO     | chi2: 0.12763401117383924
[2025-05-30 08:06:38] 2025-05-30 05:52:02,878 | INFO     | -- intersect: 4836562088.735013
[2025-05-30 08:06:38] 2025-05-30 05:52:02,878 | INFO     | current memory leak: -2.76 B/s (using 271 data points, chi2=0.13)
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | ..............................
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . Timing measurements:
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . get job = 0 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . initial setup = 3 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . payload setup = 161 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . stage-in = 0 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . payload execution = 18820 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . stage-out = 4 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | . log creation = 1 s
[2025-05-30 08:06:38] 2025-05-30 05:52:02,879 | INFO     | ..............................
[2025-05-30 08:06:38] 2025-05-30 05:52:03,036 | INFO     | 
[2025-05-30 08:06:38] 2025-05-30 05:52:03,036 | INFO     | job summary report
[2025-05-30 08:06:38] 2025-05-30 05:52:03,036 | INFO     | --------------------------------------------------
[2025-05-30 08:06:38] 2025-05-30 05:52:03,036 | INFO     | PanDA job id: 6669239047
[2025-05-30 08:06:38] 2025-05-30 05:52:03,036 | INFO     | task id: 44871837
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | errors: (none)
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | pilot state: finished 
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | transexitcode: 0
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | exeerrorcode: 0
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | exeerrordiag: 
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | exitcode: 0
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | exitmsg: OK
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | cpuconsumptiontime: 71700 s
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | nevents: 400
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | neventsw: 0
[2025-05-30 08:06:38] 2025-05-30 05:52:03,037 | INFO     | pid: 11262
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | pgrp: 11262
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | corecount: 8
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | event service: False
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | sizes: {0: 2405007, 1: 2405262, 2: 2405290, 12: 2405290, 23: 2405318, 34: 2405346, 45: 2405502, 55: 2405530, 66: 2405558, 77: 2405586, 83: 2405848, 87: 2406184, 18
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | --------------------------------------------------
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | 
[2025-05-30 08:06:38] 2025-05-30 05:52:03,038 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 08:06:38] 2025-05-30 05:52:03,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 08:06:38] 2025-05-30 05:52:03,386 | INFO     | job 6669239047 has completed (purged errors)
[2025-05-30 08:06:38] 2025-05-30 05:52:03,386 | INFO     | overall cleanup function is called
[2025-05-30 08:06:38] 2025-05-30 05:52:04,397 | INFO     | --- collectZombieJob: --- 10, [11262]
[2025-05-30 08:06:38] 2025-05-30 05:52:04,397 | INFO     | zombie collector waiting for pid 11262
[2025-05-30 08:06:38] 2025-05-30 05:52:04,398 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 08:06:38] 2025-05-30 05:52:04,398 | INFO     | collected zombie processes
[2025-05-30 08:06:38] 2025-05-30 05:52:04,398 | INFO     | will attempt to kill all subprocesses of pid=11262
[2025-05-30 08:06:38] 2025-05-30 05:52:04,543 | INFO     | process IDs to be killed: [11262] (in reverse order)
[2025-05-30 08:06:38] 2025-05-30 05:52:05,198 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 08:06:38] 2025-05-30 05:52:05,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 08:06:38] 2025-05-30 05:52:05,201 | INFO     | did not find any defunct processes belonging to 11262
[2025-05-30 08:06:38] 2025-05-30 05:52:05,204 | INFO     | did not find any defunct processes belonging to 11262
[2025-05-30 08:06:38] 2025-05-30 05:52:05,205 | INFO     | ready for new job
[2025-05-30 08:06:38] 2025-05-30 05:52:05,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 08:06:38] 2025-05-30 05:52:05,207 | INFO     | **************************************
[2025-05-30 08:06:38] 2025-05-30 05:52:05,207 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 08:06:38] 2025-05-30 05:52:05,207 | INFO     | **************************************
[2025-05-30 08:06:38] 2025-05-30 05:52:05,207 | INFO     | 
[2025-05-30 08:06:38] 2025-05-30 05:52:05,208 | INFO     | pilot is running in a VM
[2025-05-30 08:06:38] 2025-05-30 05:52:05,208 | INFO     | architecture information:
[2025-05-30 08:06:38] 2025-05-30 05:52:05,225 | INFO     | executing command: cat /etc/os-release
[2025-05-30 08:06:38] 2025-05-30 05:52:05,522 | INFO     | cat /etc/os-release:
[2025-05-30 08:06:38] NAME="CentOS Linux"
[2025-05-30 08:06:38] VERSION="7 (Core)"
[2025-05-30 08:06:38] ID="centos"
[2025-05-30 08:06:38] ID_LIKE="rhel fedora"
[2025-05-30 08:06:38] VERSION_ID="7"
[2025-05-30 08:06:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 08:06:38] ANSI_COLOR="0;31"
[2025-05-30 08:06:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 08:06:38] HOME_URL="https://www.centos.org/"
[2025-05-30 08:06:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 08:06:38] 
[2025-05-30 08:06:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 08:06:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 08:06:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 08:06:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 08:06:38] 
[2025-05-30 08:06:38] 2025-05-30 05:52:05,522 | INFO     | **************************************
[2025-05-30 08:06:38] 2025-05-30 05:52:06,025 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-30 08:06:38] 2025-05-30 05:52:06,311 | INFO     | sufficient remaining disk space (495222521856 B)
[2025-05-30 08:06:38] 2025-05-30 05:52:06,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 08:06:38] 2025-05-30 05:52:06,311 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 08:06:38] 2025-05-30 05:52:06,311 | INFO     | update_server=False
[2025-05-30 08:06:38] 2025-05-30 05:52:06,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 08:06:38] 2025-05-30 05:52:06,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 08:06:38] 2025-05-30 05:52:06,312 | INFO     | aborting loop
[2025-05-30 08:06:38] 2025-05-30 05:52:06,316 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 08:06:38] 2025-05-30 05:52:06,317 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 08:06:38] 2025-05-30 05:52:06,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 08:06:38] 2025-05-30 05:52:06,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 08:06:38] 2025-05-30 05:52:06,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 08:06:38] 2025-05-30 05:52:06,509 | INFO     | all data control threads have been joined
[2025-05-30 08:06:38] 2025-05-30 05:52:07,036 | INFO     | all payload control threads have been joined
[2025-05-30 08:06:38] 2025-05-30 05:52:07,317 | INFO     | [job] retrieve thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,318 | INFO     | [job] job monitor thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,399 | INFO     | [job] validate thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,420 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,480 | INFO     | [data] copytool_in thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 08:06:38] 2025-05-30 05:52:07,515 | INFO     | [data] control thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,535 | INFO     | all job control threads have been joined
[2025-05-30 08:06:38] 2025-05-30 05:52:07,706 | INFO     | [payload] validate_post thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:07,732 | INFO     | [payload] failed_post thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:08,042 | INFO     | [payload] control thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:08,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 08:06:38] 2025-05-30 05:52:08,326 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:08,352 | INFO     | [data] copytool_out thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:08,541 | INFO     | [job] control thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:08,681 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:09,056 | INFO     | [job] queue monitor thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:11,506 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 08:06:38] 2025-05-30 05:52:12,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960417199936)>', '<ExcThread(monitor, started 139959746942720)>']
[2025-05-30 08:06:38] 2025-05-30 05:52:13,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 08:06:38] 2025-05-30 05:52:13,359 | INFO     | [monitor] control thread has ended
[2025-05-30 08:06:38] 2025-05-30 05:52:18,019 | INFO     | all workflow threads have been joined
[2025-05-30 08:06:38] 2025-05-30 05:52:18,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 08:06:38] 2025-05-30 05:52:18,020 | INFO     | traces error code: 0
[2025-05-30 08:06:38] 2025-05-30 05:52:18,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 08:06:38] 2025-05-30 05:52:18,334 [wrapper] ==== pilot stdout END ====
[2025-05-30 08:06:38] 2025-05-30 05:52:18,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 08:06:38] 2025-05-30 05:52:18,499 [wrapper] pilotpid: 4696
[2025-05-30 08:06:38] 2025-05-30 05:52:18,535 [wrapper] Pilot exit status: 0
[2025-05-30 08:06:38] 2025-05-30 05:52:18,876 [wrapper] pandaids: 6669239047
[2025-05-30 08:06:38] 2025-05-30 05:52:19,678 [wrapper] cleanup supervisor_pilot 12079 4697
[2025-05-30 08:06:38] 2025-05-30 05:52:19,787 [wrapper] Test setup, not cleaning
[2025-05-30 08:06:38] 2025-05-30 05:52:19,892 [wrapper] apfmon messages muted
[2025-05-30 08:06:38] 2025-05-30 05:52:19,991 [wrapper] ==== wrapper stdout END ====
[2025-05-30 08:06:38] 2025-05-30 05:52:20,071 [wrapper] ==== wrapper stderr END ====
[2025-05-30 08:06:38]  *** Error codes and diagnostics ***
[2025-05-30 08:06:38]     "exeErrorCode": 0,
[2025-05-30 08:06:38]     "exeErrorDiag": "",
[2025-05-30 08:06:38]     "pilotErrorCode": 0,
[2025-05-30 08:06:38]     "pilotErrorDiag": "",
[2025-05-30 08:06:38]  *** Listing of results directory ***
[2025-05-30 08:06:38] total 423444
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc    495897 May 29 06:58 pilot3.tar.gz
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc      5111 May 29 07:25 queuedata.json
[2025-05-30 08:06:38] -rwx------. 1 boinc boinc     37140 May 29 07:26 runpilot2-wrapper.sh
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc       100 May 30 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 08:06:38] -rwxr-xr-x. 1 boinc boinc      7986 May 30 02:27 run_atlas
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc       105 May 30 02:27 job.xml
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc      6370 May 30 02:27 init_data.xml
[2025-05-30 08:06:38] -rw-r--r--. 2 boinc boinc 225321823 May 30 02:27 EVNT.44871834._003753.pool.root.1
[2025-05-30 08:06:38] -rw-r--r--. 2 boinc boinc     15093 May 30 02:27 start_atlas.sh
[2025-05-30 08:06:38] drwxrwx--x. 2 boinc boinc        68 May 30 02:27 shared
[2025-05-30 08:06:38] -rw-r--r--. 2 boinc boinc    508878 May 30 02:27 input.tar.gz
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc         0 May 30 02:27 boinc_lockfile
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc      2559 May 30 02:28 pandaJob.out
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc    992366 May 30 02:30 agis_schedconf.cvmfs.json
[2025-05-30 08:06:38] drwx------. 4 boinc boinc      4096 May 30 02:31 pilot3
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc 200342103 May 30 07:49 HITS.44871837._095562.pool.root.1
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc       531 May 30 07:49 boinc_task_state.xml
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc      1014 May 30 07:50 memory_monitor_summary.json
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc   1603667 May 30 07:50 agis_ddmendpoints.agis.ALL.json
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc    425757 May 30 07:50 log.44871837._095562.job.log.tgz.1
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc        95 May 30 07:51 pilot_heartbeat.json
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc      7688 May 30 07:52 heartbeat.json
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc      4539 May 30 07:52 pilotlog.txt
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc   1629436 May 30 07:52 log.44871837._095562.job.log.1
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc       357 May 30 07:52 output.list
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc       620 May 30 07:52 runtime_log
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc   2078720 May 30 07:52 result.tar.gz
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc      8659 May 30 07:52 runtime_log.err
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc       657 May 30 07:52 E5zLDmkxke7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIrdKDm4Dnbvn.diag
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc      8192 May 30 08:06 boinc_mmap_file
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc        28 May 30 08:06 wrapper_checkpoint.txt
[2025-05-30 08:06:38] -rw-r--r--. 1 boinc boinc     20513 May 30 08:06 stderr.txt
[2025-05-30 08:06:38] HITS file was successfully produced:
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc 200342103 May 30 07:49 shared/HITS.pool.root.1
[2025-05-30 08:06:38]  *** Contents of shared directory: ***
[2025-05-30 08:06:38] total 418240
[2025-05-30 08:06:38] -rw-r--r--. 2 boinc boinc 225321823 May 30 02:27 ATLAS.root_0
[2025-05-30 08:06:38] -rw-r--r--. 2 boinc boinc     15093 May 30 02:27 start_atlas.sh
[2025-05-30 08:06:38] -rw-r--r--. 2 boinc boinc    508878 May 30 02:27 input.tar.gz
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc 200342103 May 30 07:49 HITS.pool.root.1
[2025-05-30 08:06:38] -rw-------. 1 boinc boinc   2078720 May 30 07:52 result.tar.gz
08:06:40 (26897): run_atlas exited; CPU time 71968.101969
08:06:40 (26897): called boinc_finish(0)

</stderr_txt>
]]>

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