Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:30:13 (3647384): wrapper (7.7.26015): starting
04:30:13 (3647384): wrapper: running run_atlas (--nthreads 12)
[2025-05-29 04:30:13] Arguments: --nthreads 12
[2025-05-29 04:30:13] Threads: 12
[2025-05-29 04:30:13] Checking for CVMFS
[2025-05-29 04:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 04:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 04:30:13] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 04:30:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 04:30:13] 2.11.5.0 3715735 14957 258732 146560 3 692 29217307 45568000 12582 130560 0 129784740 99.790 91694483 27297 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-29 04:30:13] CVMFS is ok
[2025-05-29 04:30:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 04:30:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 04:30:13] Further information can be found at the LHC@home message board.
[2025-05-29 04:30:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 04:30:13] Checking for apptainer binary...
[2025-05-29 04:30:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 04:30:13] Running /usr/bin/apptainer --version
[2025-05-29 04:30:13] apptainer version 1.4.0-1.el9
[2025-05-29 04:30:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 04:30:13] wns0167.triumf.lcg
[2025-05-29 04:30:13] apptainer works
[2025-05-29 04:30:13] Set ATHENA_PROC_NUMBER=12
[2025-05-29 04:30:13] Set ATHENA_CORE_NUMBER=12
[2025-05-29 04:30:13] Starting ATLAS job with PandaID=6669622518
[2025-05-29 04:30:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 04:33:29]  *** The last 200 lines of the pilot log: ***
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | found no stored workdir sizes
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | INFO     | will not add max space = 0 B to job metrics
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | WARNING  | wrong length of table data, x=[1748518255.0], y=[1172.0] (must be same and length>=4)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | ..............................
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . Timing measurements:
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . get job = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . initial setup = 3 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . payload setup = 8 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . stage-in = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . payload execution = 21 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . stage-out = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . log creation = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | ..............................
[2025-05-29 04:33:29] 2025-05-29 11:33:16,433 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-29 04:33:29] 2025-05-29 11:33:16,433 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6669622518/pilotlog.txt
[2025-05-29 04:33:29] 2025-05-29 11:33:16,450 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-29 04:33:29] - Log from pilotlog.txt -
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | INFO     | extracted standard info from prmon json
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | found no stored workdir sizes
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | INFO     | will not add max space = 0 B to job metrics
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | WARNING  | wrong length of table data, x=[1748518255.0], y=[1172.0] (must be same and length>=4)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | ..............................
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . Timing measurements:
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . get job = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . initial setup = 3 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . payload setup = 8 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . stage-in = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . payload execution = 21 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . stage-out = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . log creation = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | ..............................
[2025-05-29 04:33:29] 2025-05-29 11:33:16,433 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-29 04:33:29] 2025-05-29 11:33:16,433 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6669622518/pilotlog.txt
[2025-05-29 04:33:29] 2025-05-29 11:33:16,451 | WARNING  | 
[2025-05-29 04:33:29] [begin log extracts]
[2025-05-29 04:33:29] - Log from pilotlog.txt -
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | INFO     | extracted standard info from prmon json
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 04:33:29] 2025-05-29 11:33:16,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | WARNING  | found no stored workdir sizes
[2025-05-29 04:33:29] 2025-05-29 11:33:16,431 | INFO     | will not add max space = 0 B to job metrics
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | WARNING  | wrong length of table data, x=[1748518255.0], y=[1172.0] (must be same and length>=4)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | ..............................
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . Timing measurements:
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . get job = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . initial setup = 3 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . payload setup = 8 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . stage-in = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . payload execution = 21 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . stage-out = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | . log creation = 0 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,432 | INFO     | ..............................
[2025-05-29 04:33:29] 2025-05-29 11:33:16,433 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-29 04:33:29] 2025-05-29 11:33:16,433 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6669622518/pilotlog.txt
[2025-05-29 04:33:29] [end log extracts]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,451 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,452 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-29 04:33:29] 2025-05-29 11:33:16,894 | INFO     | 
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | job summary report
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | --------------------------------------------------
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | PanDA job id: 6669622518
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | task id: 44871837
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-29 04:31:06,806 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | pilot state: failed 
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | transexitcode: 65
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | exeerrorcode: 65
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | exitcode: 65
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | cpuconsumptiontime: 19 s
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | nevents: 0
[2025-05-29 04:33:29] 2025-05-29 11:33:16,895 | INFO     | neventsw: 0
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | pid: 3669036
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | pgrp: 3669036
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | corecount: 12
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | event service: False
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | sizes: {0: 2405231, 4: 2405437, 11: 2405465, 33: 2432857, 36: 2432857, 156: 2432999}
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | --------------------------------------------------
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | 
[2025-05-29 04:33:29] 2025-05-29 11:33:16,896 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-29 04:33:29] 2025-05-29 11:33:16,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | job 6669622518 has completed (purged errors)
[2025-05-29 04:33:29] 2025-05-29 11:33:16,915 | INFO     | overall cleanup function is called
[2025-05-29 04:33:29] 2025-05-29 11:33:17,921 | INFO     | --- collectZombieJob: --- 10, [3669036]
[2025-05-29 04:33:29] 2025-05-29 11:33:17,921 | INFO     | zombie collector waiting for pid 3669036
[2025-05-29 04:33:29] 2025-05-29 11:33:17,921 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 04:33:29] 2025-05-29 11:33:17,922 | INFO     | collected zombie processes
[2025-05-29 04:33:29] 2025-05-29 11:33:17,922 | INFO     | will attempt to kill all subprocesses of pid=3669036
[2025-05-29 04:33:29] 2025-05-29 11:33:18,127 | INFO     | process IDs to be killed: [3669036] (in reverse order)
[2025-05-29 04:33:29] 2025-05-29 11:33:18,213 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 04:33:29] 2025-05-29 11:33:18,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 04:33:29] 2025-05-29 11:33:18,221 | INFO     | did not find any defunct processes belonging to 3669036
[2025-05-29 04:33:29] 2025-05-29 11:33:18,229 | INFO     | did not find any defunct processes belonging to 3669036
[2025-05-29 04:33:29] 2025-05-29 11:33:18,230 | INFO     | ready for new job
[2025-05-29 04:33:29] 2025-05-29 11:33:18,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 04:33:29] 2025-05-29 11:33:18,231 | INFO     | **************************************
[2025-05-29 04:33:29] 2025-05-29 11:33:18,232 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 04:33:29] 2025-05-29 11:33:18,232 | INFO     | **************************************
[2025-05-29 04:33:29] 2025-05-29 11:33:18,232 | INFO     | 
[2025-05-29 04:33:29] 2025-05-29 11:33:18,234 | INFO     | architecture information:
[2025-05-29 04:33:29] 2025-05-29 11:33:18,235 | INFO     | executing command: cat /etc/os-release
[2025-05-29 04:33:29] 2025-05-29 11:33:18,245 | INFO     | cat /etc/os-release:
[2025-05-29 04:33:29] NAME="CentOS Linux"
[2025-05-29 04:33:29] VERSION="7 (Core)"
[2025-05-29 04:33:29] ID="centos"
[2025-05-29 04:33:29] ID_LIKE="rhel fedora"
[2025-05-29 04:33:29] VERSION_ID="7"
[2025-05-29 04:33:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 04:33:29] ANSI_COLOR="0;31"
[2025-05-29 04:33:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 04:33:29] HOME_URL="https://www.centos.org/"
[2025-05-29 04:33:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 04:33:29] 
[2025-05-29 04:33:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 04:33:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 04:33:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 04:33:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 04:33:29] 
[2025-05-29 04:33:29] 2025-05-29 11:33:18,245 | INFO     | **************************************
[2025-05-29 04:33:29] 2025-05-29 11:33:18,748 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-29 04:33:29] 2025-05-29 11:33:18,761 | INFO     | sufficient remaining disk space (2009220513792 B)
[2025-05-29 04:33:29] 2025-05-29 11:33:18,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 04:33:29] 2025-05-29 11:33:18,762 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 04:33:29] 2025-05-29 11:33:18,762 | INFO     | update_server=False
[2025-05-29 04:33:29] 2025-05-29 11:33:18,762 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 04:33:29] 2025-05-29 11:33:18,762 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 04:33:29] 2025-05-29 11:33:18,763 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 04:33:29] 2025-05-29 11:33:18,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 04:33:29] 2025-05-29 11:33:18,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 04:33:29] 2025-05-29 11:33:18,763 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 04:33:29] 2025-05-29 11:33:18,763 | INFO     | aborting loop
[2025-05-29 04:33:29] 2025-05-29 11:33:19,429 | INFO     | all job control threads have been joined
[2025-05-29 04:33:29] 2025-05-29 11:33:19,767 | INFO     | [job] retrieve thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:19,768 | INFO     | [job] job monitor thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:19,791 | INFO     | all data control threads have been joined
[2025-05-29 04:33:29] 2025-05-29 11:33:19,877 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:19,912 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 04:33:29] 2025-05-29 11:33:19,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:19,974 | INFO     | [payload] failed_post thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:20,014 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 04:33:29] 2025-05-29 11:33:20,017 | INFO     | all payload control threads have been joined
[2025-05-29 04:33:29] 2025-05-29 11:33:20,434 | INFO     | [job] control thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:20,591 | INFO     | [payload] validate_post thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:20,797 | INFO     | [data] control thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:20,969 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:20,982 | INFO     | [job] validate thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:21,023 | INFO     | [payload] control thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:21,159 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:21,186 | INFO     | [data] copytool_in thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:21,545 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 04:33:29] 2025-05-29 11:33:21,921 | INFO     | [data] copytool_out thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:22,550 | INFO     | [job] queue monitor thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:24,021 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 04:33:29] 2025-05-29 11:33:24,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628083025728)>', '<ExcThread(monitor, started 140627530462976)>']
[2025-05-29 04:33:29] 2025-05-29 11:33:24,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 04:33:29] 2025-05-29 11:33:24,798 | INFO     | [monitor] control thread has ended
[2025-05-29 04:33:29] 2025-05-29 11:33:29,247 | INFO     | all workflow threads have been joined
[2025-05-29 04:33:29] 2025-05-29 11:33:29,247 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 04:33:29] 2025-05-29 11:33:29,247 | INFO     | traces error code: 0
[2025-05-29 04:33:29] 2025-05-29 11:33:29,248 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 04:33:29] 2025-05-29 11:33:29,358 [wrapper] ==== pilot stdout END ====
[2025-05-29 04:33:29] 2025-05-29 11:33:29,364 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 04:33:29] 2025-05-29 11:33:29,377 [wrapper] pilotpid: 3651329
[2025-05-29 04:33:29] 2025-05-29 11:33:29,399 [wrapper] Pilot exit status: 0
[2025-05-29 04:33:29] 2025-05-29 11:33:29,460 [wrapper] pandaids: 6669622518
[2025-05-29 04:33:29] 2025-05-29 11:33:29,533 [wrapper] cleanup supervisor_pilot 3651335 3651330
[2025-05-29 04:33:29] 2025-05-29 11:33:29,536 [wrapper] Test setup, not cleaning
[2025-05-29 04:33:29] 2025-05-29 11:33:29,538 [wrapper] apfmon messages muted
[2025-05-29 04:33:29] 2025-05-29 11:33:29,545 [wrapper] ==== wrapper stdout END ====
[2025-05-29 04:33:29] 2025-05-29 11:33:29,556 [wrapper] ==== wrapper stderr END ====
[2025-05-29 04:33:29]  *** Error codes and diagnostics ***
[2025-05-29 04:33:29]     "exeErrorCode": 65,
[2025-05-29 04:33:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-29 04:33:29]     "pilotErrorCode": 1305,
[2025-05-29 04:33:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-29 04:33:29]  *** Listing of results directory ***
[2025-05-29 04:33:29] total 221496
[2025-05-29 04:33:29] -rwx------. 1 boinc boinc     37140 May 29 01:32 runpilot2-wrapper.sh
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc    495897 May 29 01:32 pilot3.tar.gz
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc      5111 May 29 01:32 queuedata.json
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc       100 May 29 04:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 04:33:29] -rwxr-xr-x. 1 boinc boinc      7986 May 29 04:30 run_atlas
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc       105 May 29 04:30 job.xml
[2025-05-29 04:33:29] -rw-r--r--. 2 boinc boinc 222783233 May 29 04:30 EVNT.44871834._003839.pool.root.1
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc      6598 May 29 04:30 init_data.xml
[2025-05-29 04:33:29] -rw-r--r--. 2 boinc boinc     15093 May 29 04:30 start_atlas.sh
[2025-05-29 04:33:29] drwxrwx--x. 2 boinc boinc      4096 May 29 04:30 shared
[2025-05-29 04:33:29] -rw-r--r--. 2 boinc boinc    508874 May 29 04:30 input.tar.gz
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc         0 May 29 04:30 boinc_lockfile
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc      2559 May 29 04:30 pandaJob.out
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc    993012 May 29 04:30 agis_schedconf.cvmfs.json
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc   1603667 May 29 04:30 agis_ddmendpoints.agis.ALL.json
[2025-05-29 04:33:29] drwx------. 4 boinc boinc      4096 May 29 04:30 pilot3
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc       523 May 29 04:31 boinc_task_state.xml
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc       955 May 29 04:31 memory_monitor_summary.json
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc     20263 May 29 04:31 log.44871837._097535.job.log.tgz.1
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc        95 May 29 04:32 pilot_heartbeat.json
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc      8313 May 29 04:33 heartbeat.json
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc      8192 May 29 04:33 boinc_mmap_file
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc        22 May 29 04:33 wrapper_checkpoint.txt
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc      4475 May 29 04:33 pilotlog.txt
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc     73549 May 29 04:33 log.44871837._097535.job.log.1
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc       188 May 29 04:33 output.list
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc       620 May 29 04:33 runtime_log
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc    112640 May 29 04:33 result.tar.gz
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc       645 May 29 04:33 ZyGODmNrne7n9Rq4apOajLDm4fhM0noT9bVof3QYDmvtUKDmnX15Zn.diag
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc      8484 May 29 04:33 runtime_log.err
[2025-05-29 04:33:29] -rw-r--r--. 1 boinc boinc     21471 May 29 04:33 stderr.txt
[2025-05-29 04:33:29] No HITS result produced
[2025-05-29 04:33:29]  *** Contents of shared directory: ***
[2025-05-29 04:33:29] total 218196
[2025-05-29 04:33:29] -rw-r--r--. 2 boinc boinc 222783233 May 29 04:30 ATLAS.root_0
[2025-05-29 04:33:29] -rw-r--r--. 2 boinc boinc     15093 May 29 04:30 start_atlas.sh
[2025-05-29 04:33:29] -rw-r--r--. 2 boinc boinc    508874 May 29 04:30 input.tar.gz
[2025-05-29 04:33:29] -rw-------. 1 boinc boinc    112640 May 29 04:33 result.tar.gz
04:33:30 (3647384): run_atlas exited; CPU time 24.216186
04:33:30 (3647384): called boinc_finish(0)

</stderr_txt>
]]>

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