Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:07 (18580): wrapper (7.7.26015): starting
23:57:07 (18580): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 23:57:07] Arguments: --nthreads 8
[2025-05-29 23:57:07] Threads: 8
[2025-05-29 23:57:07] Checking for CVMFS
[2025-05-29 23:57:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 23:57:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 23:57:08] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 23:57:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 23:57:09] 2.11.2.0 18345 25232 96664 146576 1 60 19853728 25165824 4633 130560 0 13838951 99.841 15011257 1716 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 23:57:09] CVMFS is ok
[2025-05-29 23:57:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 23:57:09] Checking for apptainer binary...
[2025-05-29 23:57:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 23:57:09] Running /usr/bin/apptainer --version
[2025-05-29 23:57:09] apptainer version 1.3.2-1.el7
[2025-05-29 23:57:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 23:57:20] cg-vwn239.simple-grid.lan
[2025-05-29 23:57:20] apptainer works
[2025-05-29 23:57:20] Set ATHENA_PROC_NUMBER=8
[2025-05-29 23:57:20] Set ATHENA_CORE_NUMBER=8
[2025-05-29 23:57:20] Starting ATLAS job with PandaID=6669089014
[2025-05-29 23:57:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 05:05:30]  *** The last 200 lines of the pilot log: ***
[2025-05-30 05:05:30] 2025-05-30 03:00:25,857 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 05:05:30] 2025-05-30 03:00:25,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 05:05:30] 2025-05-30 03:00:25,857 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 05:05:30] 2025-05-30 03:00:25,857 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 05:05:30] 2025-05-30 03:00:25,863 | INFO     | fitting pss+swap vs Time
[2025-05-30 05:05:30] 2025-05-30 03:00:25,865 | INFO     | sum of square deviations: 7253894147.5
[2025-05-30 05:05:30] 2025-05-30 03:00:25,868 | INFO     | sum of deviations: 104139046280.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,868 | INFO     | mean x: 1748565220.5
[2025-05-30 05:05:30] 2025-05-30 03:00:25,868 | INFO     | mean y: 2451775.244755245
[2025-05-30 05:05:30] 2025-05-30 03:00:25,868 | INFO     | -- intersect: -25100466839.02882
[2025-05-30 05:05:30] 2025-05-30 03:00:25,868 | INFO     | intersect: -25100466839.02882
[2025-05-30 05:05:30] 2025-05-30 03:00:25,869 | INFO     | chi2: 7.297102783064623
[2025-05-30 05:05:30] 2025-05-30 03:00:25,869 | INFO     | sum of square deviations: 6880054580.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,872 | INFO     | sum of deviations: 120792935110.99986
[2025-05-30 05:05:30] 2025-05-30 03:00:25,872 | INFO     | mean x: 1748565068.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,872 | INFO     | mean y: 2458459.3736654804
[2025-05-30 05:05:30] 2025-05-30 03:00:25,872 | INFO     | -- intersect: -30697051891.935944
[2025-05-30 05:05:30] 2025-05-30 03:00:25,873 | INFO     | intersect: -30697051891.935944
[2025-05-30 05:05:30] 2025-05-30 03:00:25,873 | INFO     | chi2: 6.578284036225733
[2025-05-30 05:05:30] 2025-05-30 03:00:25,873 | INFO     | current chi2=6.578284036225733 (change=9.850741701311243 %)
[2025-05-30 05:05:30] 2025-05-30 03:00:25,873 | INFO     | right removable region: 280
[2025-05-30 05:05:30] 2025-05-30 03:00:25,874 | INFO     | sum of square deviations: 6880054580.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,876 | INFO     | sum of deviations: 4559648556.999992
[2025-05-30 05:05:30] 2025-05-30 03:00:25,876 | INFO     | mean x: 1748565373.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,877 | INFO     | mean y: 2492369.4804270463
[2025-05-30 05:05:30] 2025-05-30 03:00:25,877 | INFO     | -- intersect: -1156341980.9034042
[2025-05-30 05:05:30] 2025-05-30 03:00:25,877 | INFO     | intersect: -1156341980.9034042
[2025-05-30 05:05:30] 2025-05-30 03:00:25,877 | INFO     | chi2: 2.502391595576027
[2025-05-30 05:05:30] 2025-05-30 03:00:25,877 | INFO     | current chi2=2.502391595576027 (change=65.70705292265217 %)
[2025-05-30 05:05:30] 2025-05-30 03:00:25,878 | INFO     | sum of square deviations: 6519285025.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,880 | INFO     | sum of deviations: -49661500041.5
[2025-05-30 05:05:30] 2025-05-30 03:00:25,880 | INFO     | mean x: 1748565525.5
[2025-05-30 05:05:30] 2025-05-30 03:00:25,881 | INFO     | mean y: 2515195.605072464
[2025-05-30 05:05:30] 2025-05-30 03:00:25,881 | INFO     | -- intersect: 13322440092.919056
[2025-05-30 05:05:30] 2025-05-30 03:00:25,881 | INFO     | intersect: 13322440092.919056
[2025-05-30 05:05:30] 2025-05-30 03:00:25,881 | INFO     | chi2: 0.9079781994077942
[2025-05-30 05:05:30] 2025-05-30 03:00:25,881 | INFO     | current chi2=0.9079781994077942 (change=63.71558308407816 %)
[2025-05-30 05:05:30] 2025-05-30 03:00:25,882 | INFO     | sum of square deviations: 6171352920.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,884 | INFO     | sum of deviations: -54098566628.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,884 | INFO     | mean x: 1748565678.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,884 | INFO     | mean y: 2517108.3763837637
[2025-05-30 05:05:30] 2025-05-30 03:00:25,885 | INFO     | -- intersect: 15330581806.824547
[2025-05-30 05:05:30] 2025-05-30 03:00:25,885 | INFO     | intersect: 15330581806.824547
[2025-05-30 05:05:30] 2025-05-30 03:00:25,885 | INFO     | chi2: 0.8629435352007573
[2025-05-30 05:05:30] 2025-05-30 03:00:25,885 | INFO     | current chi2=0.8629435352007573 (change=4.959883864657727 %)
[2025-05-30 05:05:30] 2025-05-30 03:00:25,885 | INFO     | left removable region: 30
[2025-05-30 05:05:30] 2025-05-30 03:00:25,886 | INFO     | sum of square deviations: 4844974562.5
[2025-05-30 05:05:30] 2025-05-30 03:00:25,888 | INFO     | sum of deviations: -25220797578.0
[2025-05-30 05:05:30] 2025-05-30 03:00:25,888 | INFO     | mean x: 1748565952.5
[2025-05-30 05:05:30] 2025-05-30 03:00:25,888 | INFO     | mean y: 2520310.152
[2025-05-30 05:05:30] 2025-05-30 03:00:25,888 | INFO     | -- intersect: 9104782328.433807
[2025-05-30 05:05:30] 2025-05-30 03:00:25,888 | INFO     | intersect: 9104782328.433807
[2025-05-30 05:05:30] 2025-05-30 03:00:25,889 | INFO     | chi2: 0.06887901917858688
[2025-05-30 05:05:30] 2025-05-30 03:00:25,889 | INFO     | -- intersect: 9104782328.433807
[2025-05-30 05:05:30] 2025-05-30 03:00:25,889 | INFO     | current memory leak: -5.21 B/s (using 250 data points, chi2=0.07)
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | ..............................
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . Timing measurements:
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . get job = 0 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . initial setup = 9 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . payload setup = 176 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . stage-in = 0 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . payload execution = 17541 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,890 | INFO     | . stage-out = 3 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,891 | INFO     | . log creation = 1 s
[2025-05-30 05:05:30] 2025-05-30 03:00:25,891 | INFO     | ..............................
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | 
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | job summary report
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | --------------------------------------------------
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | PanDA job id: 6669089014
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | task id: 44871837
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | errors: (none)
[2025-05-30 05:05:30] 2025-05-30 03:00:26,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | pilot state: finished 
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | transexitcode: 0
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | exeerrorcode: 0
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | exeerrordiag: 
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | exitcode: 0
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | exitmsg: OK
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | cpuconsumptiontime: 66370 s
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | nevents: 400
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | neventsw: 0
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | pid: 32090
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | pgrp: 32090
[2025-05-30 05:05:30] 2025-05-30 03:00:26,476 | INFO     | corecount: 8
[2025-05-30 05:05:30] 2025-05-30 03:00:26,477 | INFO     | event service: False
[2025-05-30 05:05:30] 2025-05-30 03:00:26,477 | INFO     | sizes: {0: 2405006, 1: 2405090, 2: 2405261, 13: 2405289, 23: 2405345, 34: 2405373, 45: 2405529, 55: 2405557, 66: 2405585, 77: 2405613, 82: 2405875, 88: 2406211, 17
[2025-05-30 05:05:30] 2025-05-30 03:00:26,477 | INFO     | --------------------------------------------------
[2025-05-30 05:05:30] 2025-05-30 03:00:26,477 | INFO     | 
[2025-05-30 05:05:30] 2025-05-30 03:00:26,477 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-05-30 05:05:30] 2025-05-30 03:00:27,013 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 05:05:30] 2025-05-30 03:00:27,015 | INFO     | job 6669089014 has completed (purged errors)
[2025-05-30 05:05:30] 2025-05-30 03:00:27,016 | INFO     | overall cleanup function is called
[2025-05-30 05:05:30] 2025-05-30 03:00:27,693 [wrapper] supervise_pilot (15 min periods counter: 21)
[2025-05-30 05:05:30] 2025-05-30 03:00:28,026 | INFO     | --- collectZombieJob: --- 10, [32090]
[2025-05-30 05:05:30] 2025-05-30 03:00:28,026 | INFO     | zombie collector waiting for pid 32090
[2025-05-30 05:05:30] 2025-05-30 03:00:28,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 05:05:30] 2025-05-30 03:00:28,026 | INFO     | collected zombie processes
[2025-05-30 05:05:30] 2025-05-30 03:00:28,026 | INFO     | will attempt to kill all subprocesses of pid=32090
[2025-05-30 05:05:30] 2025-05-30 03:00:28,136 | INFO     | process IDs to be killed: [32090] (in reverse order)
[2025-05-30 05:05:30] 2025-05-30 03:00:28,693 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 05:05:30] 2025-05-30 03:00:28,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 05:05:30] 2025-05-30 03:00:28,697 | INFO     | did not find any defunct processes belonging to 32090
[2025-05-30 05:05:30] 2025-05-30 03:00:28,705 | INFO     | did not find any defunct processes belonging to 32090
[2025-05-30 05:05:30] 2025-05-30 03:00:28,705 | INFO     | ready for new job
[2025-05-30 05:05:30] 2025-05-30 03:00:28,706 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 05:05:30] 2025-05-30 03:00:28,708 | INFO     | **************************************
[2025-05-30 05:05:30] 2025-05-30 03:00:28,708 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 05:05:30] 2025-05-30 03:00:28,708 | INFO     | **************************************
[2025-05-30 05:05:30] 2025-05-30 03:00:28,708 | INFO     | 
[2025-05-30 05:05:30] 2025-05-30 03:00:28,709 | INFO     | pilot is running in a VM
[2025-05-30 05:05:30] 2025-05-30 03:00:28,709 | INFO     | architecture information:
[2025-05-30 05:05:30] 2025-05-30 03:00:28,717 | INFO     | executing command: cat /etc/os-release
[2025-05-30 05:05:30] 2025-05-30 03:00:28,849 | INFO     | cat /etc/os-release:
[2025-05-30 05:05:30] NAME="CentOS Linux"
[2025-05-30 05:05:30] VERSION="7 (Core)"
[2025-05-30 05:05:30] ID="centos"
[2025-05-30 05:05:30] ID_LIKE="rhel fedora"
[2025-05-30 05:05:30] VERSION_ID="7"
[2025-05-30 05:05:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 05:05:30] ANSI_COLOR="0;31"
[2025-05-30 05:05:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 05:05:30] HOME_URL="https://www.centos.org/"
[2025-05-30 05:05:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 05:05:30] 
[2025-05-30 05:05:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 05:05:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 05:05:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 05:05:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 05:05:30] 
[2025-05-30 05:05:30] 2025-05-30 03:00:28,849 | INFO     | **************************************
[2025-05-30 05:05:30] 2025-05-30 03:00:29,353 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-05-30 05:05:30] 2025-05-30 03:00:29,588 | INFO     | sufficient remaining disk space (496035168256 B)
[2025-05-30 05:05:30] 2025-05-30 03:00:29,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 05:05:30] 2025-05-30 03:00:29,589 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 05:05:30] 2025-05-30 03:00:29,589 | INFO     | update_server=False
[2025-05-30 05:05:30] 2025-05-30 03:00:29,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 05:05:30] 2025-05-30 03:00:29,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 05:05:30] 2025-05-30 03:00:29,589 | INFO     | aborting loop
[2025-05-30 05:05:30] 2025-05-30 03:00:29,592 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 05:05:30] 2025-05-30 03:00:29,592 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 05:05:30] 2025-05-30 03:00:29,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 05:05:30] 2025-05-30 03:00:29,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 05:05:30] 2025-05-30 03:00:29,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 05:05:30] 2025-05-30 03:00:29,977 | INFO     | all data control threads have been joined
[2025-05-30 05:05:30] 2025-05-30 03:00:30,014 | INFO     | all job control threads have been joined
[2025-05-30 05:05:30] 2025-05-30 03:00:30,598 | INFO     | [job] retrieve thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:30,598 | INFO     | [job] job monitor thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:30,982 | INFO     | [data] control thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,020 | INFO     | [job] control thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,048 | INFO     | [payload] validate_post thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 05:05:30] 2025-05-30 03:00:31,098 | INFO     | all payload control threads have been joined
[2025-05-30 05:05:30] 2025-05-30 03:00:31,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 05:05:30] 2025-05-30 03:00:31,132 | INFO     | [job] validate thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,421 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,450 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,571 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,613 | INFO     | [data] copytool_out thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:31,636 | INFO     | [data] copytool_in thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:32,073 | INFO     | [job] queue monitor thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:32,104 | INFO     | [payload] control thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:32,135 | INFO     | [payload] failed_post thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:35,116 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 05:05:30] 2025-05-30 03:00:36,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075534952256)>', '<ExcThread(monitor, started 140075090294528)>']
[2025-05-30 05:05:30] 2025-05-30 03:00:36,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 05:05:30] 2025-05-30 03:00:36,639 | INFO     | [monitor] control thread has ended
[2025-05-30 05:05:30] 2025-05-30 03:00:41,251 | INFO     | all workflow threads have been joined
[2025-05-30 05:05:30] 2025-05-30 03:00:41,251 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 05:05:30] 2025-05-30 03:00:41,251 | INFO     | traces error code: 0
[2025-05-30 05:05:30] 2025-05-30 03:00:41,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 05:05:30] 2025-05-30 03:00:41,587 [wrapper] ==== pilot stdout END ====
[2025-05-30 05:05:30] 2025-05-30 03:00:41,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 05:05:30] 2025-05-30 03:00:41,789 [wrapper] pilotpid: 25486
[2025-05-30 05:05:30] 2025-05-30 03:00:41,890 [wrapper] Pilot exit status: 0
[2025-05-30 05:05:30] 2025-05-30 03:00:42,236 [wrapper] pandaids: 6669089014
[2025-05-30 05:05:30] 2025-05-30 03:00:42,848 [wrapper] cleanup supervisor_pilot 25658 25487
[2025-05-30 05:05:30] 2025-05-30 03:00:42,949 [wrapper] Test setup, not cleaning
[2025-05-30 05:05:30] 2025-05-30 03:00:43,022 [wrapper] apfmon messages muted
[2025-05-30 05:05:30] 2025-05-30 03:00:43,042 [wrapper] ==== wrapper stdout END ====
[2025-05-30 05:05:30] 2025-05-30 03:00:43,069 [wrapper] ==== wrapper stderr END ====
[2025-05-30 05:05:30]  *** Error codes and diagnostics ***
[2025-05-30 05:05:30]     "exeErrorCode": 0,
[2025-05-30 05:05:30]     "exeErrorDiag": "",
[2025-05-30 05:05:30]     "pilotErrorCode": 0,
[2025-05-30 05:05:30]     "pilotErrorDiag": "",
[2025-05-30 05:05:30]  *** Listing of results directory ***
[2025-05-30 05:05:30] total 414820
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc    495897 May 29 03:06 pilot3.tar.gz
[2025-05-30 05:05:30] -rwx------. 1 boinc boinc     37140 May 29 03:16 runpilot2-wrapper.sh
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc      5111 May 29 03:16 queuedata.json
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc       100 May 29 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 05:05:30] -rwxr-xr-x. 1 boinc boinc      7986 May 29 23:57 run_atlas
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc       105 May 29 23:57 job.xml
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc      6372 May 29 23:57 init_data.xml
[2025-05-30 05:05:30] -rw-r--r--. 2 boinc boinc 225458566 May 29 23:57 EVNT.44871834._003613.pool.root.1
[2025-05-30 05:05:30] -rw-r--r--. 2 boinc boinc     15093 May 29 23:57 start_atlas.sh
[2025-05-30 05:05:30] drwxrwx--x. 2 boinc boinc        68 May 29 23:57 shared
[2025-05-30 05:05:30] -rw-r--r--. 2 boinc boinc    508879 May 29 23:57 input.tar.gz
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc         0 May 29 23:57 boinc_lockfile
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc      2558 May 29 23:57 pandaJob.out
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc    992366 May 30 00:00 agis_schedconf.cvmfs.json
[2025-05-30 05:05:30] drwx------. 4 boinc boinc      4096 May 30 00:00 pilot3
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc 191568514 May 30 04:57 HITS.44871837._092942.pool.root.1
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc       531 May 30 04:57 boinc_task_state.xml
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc      1026 May 30 04:58 memory_monitor_summary.json
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc   1603667 May 30 04:58 agis_ddmendpoints.agis.ALL.json
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc    431460 May 30 04:58 log.44871837._092942.job.log.tgz.1
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc        95 May 30 04:59 pilot_heartbeat.json
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc      7691 May 30 05:00 heartbeat.json
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc      4539 May 30 05:00 pilotlog.txt
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc   1525203 May 30 05:00 log.44871837._092942.job.log.1
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc       357 May 30 05:00 output.list
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc       620 May 30 05:00 runtime_log
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc   1976320 May 30 05:00 result.tar.gz
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc      8659 May 30 05:00 runtime_log.err
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc       657 May 30 05:00 g0yNDmu3ge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmaNUKDmilIiCn.diag
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc      8192 May 30 05:05 boinc_mmap_file
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc        28 May 30 05:05 wrapper_checkpoint.txt
[2025-05-30 05:05:30] -rw-r--r--. 1 boinc boinc     20501 May 30 05:05 stderr.txt
[2025-05-30 05:05:30] HITS file was successfully produced:
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc 191568514 May 30 04:57 shared/HITS.pool.root.1
[2025-05-30 05:05:30]  *** Contents of shared directory: ***
[2025-05-30 05:05:30] total 409704
[2025-05-30 05:05:30] -rw-r--r--. 2 boinc boinc 225458566 May 29 23:57 ATLAS.root_0
[2025-05-30 05:05:30] -rw-r--r--. 2 boinc boinc     15093 May 29 23:57 start_atlas.sh
[2025-05-30 05:05:30] -rw-r--r--. 2 boinc boinc    508879 May 29 23:57 input.tar.gz
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc 191568514 May 30 04:57 HITS.pool.root.1
[2025-05-30 05:05:30] -rw-------. 1 boinc boinc   1976320 May 30 05:00 result.tar.gz
05:05:32 (18580): run_atlas exited; CPU time 66617.482485
05:05:32 (18580): called boinc_finish(0)

</stderr_txt>
]]>

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