Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:20:50 (46104): wrapper (7.7.26015): starting
06:20:50 (46104): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 06:20:50] Arguments: --nthreads 8
[2025-05-29 06:20:50] Threads: 8
[2025-05-29 06:20:50] Checking for CVMFS
[2025-05-29 06:20:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 06:20:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 06:20:51] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 06:20:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 06:20:53] 2.11.2.0 20329 83956 221556 146557 2 260 17512080 18432001 10932 130560 0 193084396 98.774 532155746 37743 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-29 06:20:53] CVMFS is ok
[2025-05-29 06:20:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 06:20:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 06:20:53] Further information can be found at the LHC@home message board.
[2025-05-29 06:20:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 06:20:53] Checking for apptainer binary...
[2025-05-29 06:20:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 06:20:53] Running /usr/bin/apptainer --version
[2025-05-29 06:20:55] apptainer version 1.3.2-1.el7
[2025-05-29 06:20:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 06:21:13] c-211-9.aglt2.org
[2025-05-29 06:21:13] apptainer works
[2025-05-29 06:21:13] Set ATHENA_PROC_NUMBER=8
[2025-05-29 06:21:13] Set ATHENA_CORE_NUMBER=8
[2025-05-29 06:21:13] Starting ATLAS job with PandaID=6669234009
[2025-05-29 06:21:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:00:06 (46104): BOINC client no longer exists - exiting
07:00:06 (46104): timer handler: client dead, exiting
07:12:57 (7603): wrapper (7.7.26015): starting
07:12:57 (7603): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 07:12:57] Arguments: --nthreads 8
[2025-05-29 07:12:57] Threads: 8
[2025-05-29 07:12:57] This job has been restarted, cleaning up previous attempt
[2025-05-29 07:12:57] Checking for CVMFS
[2025-05-29 07:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 07:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 07:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 07:12:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 07:12:59] 2.11.2.0 20329 84008 225604 146558 1 334 18216085 18432001 9852 130560 0 193201784 98.774 532336583 37739 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-29 07:12:59] CVMFS is ok
[2025-05-29 07:12:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 07:12:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 07:12:59] Further information can be found at the LHC@home message board.
[2025-05-29 07:12:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 07:12:59] Checking for apptainer binary...
[2025-05-29 07:12:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 07:12:59] Running /usr/bin/apptainer --version
[2025-05-29 07:12:59] apptainer version 1.3.2-1.el7
[2025-05-29 07:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 07:13:02] c-211-9.aglt2.org
[2025-05-29 07:13:02] apptainer works
[2025-05-29 07:13:03] Set ATHENA_PROC_NUMBER=8
[2025-05-29 07:13:03] Set ATHENA_CORE_NUMBER=8
[2025-05-29 07:13:03] Starting ATLAS job with PandaID=6669234009
[2025-05-29 07:13:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 16:52:35]  *** The last 200 lines of the pilot log: ***
[2025-05-29 16:52:35] 2025-05-29 20:52:15,923 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 16:52:35] 2025-05-29 20:52:15,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 16:52:35] 2025-05-29 20:52:15,923 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 16:52:35] 2025-05-29 20:52:15,923 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 16:52:35] 2025-05-29 20:52:15,935 | INFO     | fitting pss+swap vs Time
[2025-05-29 16:52:35] 2025-05-29 20:52:15,936 | INFO     | sum of square deviations: 55929718675.65645
[2025-05-29 16:52:35] 2025-05-29 20:52:15,944 | INFO     | sum of deviations: 336718095478.53937
[2025-05-29 16:52:35] 2025-05-29 20:52:15,945 | INFO     | mean x: 1748534647.6159291
[2025-05-29 16:52:35] 2025-05-29 20:52:15,945 | INFO     | mean y: 2452417.4955752213
[2025-05-29 16:52:35] 2025-05-29 20:52:15,945 | INFO     | -- intersect: -10524388595.916054
[2025-05-29 16:52:35] 2025-05-29 20:52:15,945 | INFO     | intersect: -10524388595.916054
[2025-05-29 16:52:35] 2025-05-29 20:52:15,946 | INFO     | chi2: 5.288893414374848
[2025-05-29 16:52:35] 2025-05-29 20:52:15,947 | INFO     | sum of square deviations: 54458029195.45546
[2025-05-29 16:52:35] 2025-05-29 20:52:15,955 | INFO     | sum of deviations: 370366232012.4993
[2025-05-29 16:52:35] 2025-05-29 20:52:15,955 | INFO     | mean x: 1748534495.1160715
[2025-05-29 16:52:35] 2025-05-29 20:52:15,956 | INFO     | mean y: 2455876.5
[2025-05-29 16:52:35] 2025-05-29 20:52:15,956 | INFO     | -- intersect: -11889236534.470676
[2025-05-29 16:52:35] 2025-05-29 20:52:15,956 | INFO     | intersect: -11889236534.470676
[2025-05-29 16:52:35] 2025-05-29 20:52:15,957 | INFO     | chi2: 4.523966909723941
[2025-05-29 16:52:35] 2025-05-29 20:52:15,957 | INFO     | current chi2=4.523966909723941 (change=14.462883721042463 %)
[2025-05-29 16:52:35] 2025-05-29 20:52:15,957 | INFO     | right removable region: 559
[2025-05-29 16:52:35] 2025-05-29 20:52:15,958 | INFO     | sum of square deviations: 54457919823.74288
[2025-05-29 16:52:35] 2025-05-29 20:52:15,966 | INFO     | sum of deviations: 161267514977.81415
[2025-05-29 16:52:35] 2025-05-29 20:52:15,966 | INFO     | mean x: 1748534800.1214285
[2025-05-29 16:52:35] 2025-05-29 20:52:15,966 | INFO     | mean y: 2470584.032142857
[2025-05-29 16:52:35] 2025-05-29 20:52:15,966 | INFO     | -- intersect: -5175506521.602209
[2025-05-29 16:52:35] 2025-05-29 20:52:15,967 | INFO     | intersect: -5175506521.602209
[2025-05-29 16:52:35] 2025-05-29 20:52:15,967 | INFO     | chi2: 1.6849964499809693
[2025-05-29 16:52:35] 2025-05-29 20:52:15,968 | INFO     | current chi2=1.6849964499809693 (change=68.14085068530092 %)
[2025-05-29 16:52:35] 2025-05-29 20:52:15,968 | INFO     | sum of square deviations: 53012202254.04676
[2025-05-29 16:52:35] 2025-05-29 20:52:15,976 | INFO     | sum of deviations: 88995621620.48111
[2025-05-29 16:52:35] 2025-05-29 20:52:15,977 | INFO     | mean x: 1748534952.6252253
[2025-05-29 16:52:35] 2025-05-29 20:52:15,977 | INFO     | mean y: 2478198.1513513513
[2025-05-29 16:52:35] 2025-05-29 20:52:15,977 | INFO     | -- intersect: -2932920604.718446
[2025-05-29 16:52:35] 2025-05-29 20:52:15,977 | INFO     | intersect: -2932920604.718446
[2025-05-29 16:52:35] 2025-05-29 20:52:15,978 | INFO     | chi2: 1.0757814336307625
[2025-05-29 16:52:35] 2025-05-29 20:52:15,978 | INFO     | current chi2=1.0757814336307625 (change=36.15527002190939 %)
[2025-05-29 16:52:35] 2025-05-29 20:52:15,979 | INFO     | sum of square deviations: 51592298877.83449
[2025-05-29 16:52:35] 2025-05-29 20:52:15,987 | INFO     | sum of deviations: 50786345852.65823
[2025-05-29 16:52:35] 2025-05-29 20:52:15,987 | INFO     | mean x: 1748535105.129091
[2025-05-29 16:52:35] 2025-05-29 20:52:15,987 | INFO     | mean y: 2482297.596363636
[2025-05-29 16:52:35] 2025-05-29 20:52:15,987 | INFO     | -- intersect: -1718737933.2538626
[2025-05-29 16:52:35] 2025-05-29 20:52:15,987 | INFO     | intersect: -1718737933.2538626
[2025-05-29 16:52:35] 2025-05-29 20:52:15,988 | INFO     | chi2: 0.9165378864891731
[2025-05-29 16:52:35] 2025-05-29 20:52:15,988 | INFO     | current chi2=0.9165378864891731 (change=14.802592995506755 %)
[2025-05-29 16:52:35] 2025-05-29 20:52:15,988 | INFO     | left removable region: 30
[2025-05-29 16:52:35] 2025-05-29 20:52:15,989 | INFO     | sum of square deviations: 45905498136.313644
[2025-05-29 16:52:35] 2025-05-29 20:52:15,996 | INFO     | sum of deviations: 36596037479.17766
[2025-05-29 16:52:35] 2025-05-29 20:52:15,997 | INFO     | mean x: 1748535379.637051
[2025-05-29 16:52:35] 2025-05-29 20:52:15,997 | INFO     | mean y: 2491632.011342155
[2025-05-29 16:52:35] 2025-05-29 20:52:15,997 | INFO     | -- intersect: -1391447414.1755166
[2025-05-29 16:52:35] 2025-05-29 20:52:15,997 | INFO     | intersect: -1391447414.1755166
[2025-05-29 16:52:35] 2025-05-29 20:52:15,998 | INFO     | chi2: 0.0020380353376026382
[2025-05-29 16:52:35] 2025-05-29 20:52:15,998 | INFO     | -- intersect: -1391447414.1755166
[2025-05-29 16:52:35] 2025-05-29 20:52:15,998 | INFO     | current memory leak: 0.80 B/s (using 529 data points, chi2=0.00)
[2025-05-29 16:52:35] 2025-05-29 20:52:15,999 | INFO     | ..............................
[2025-05-29 16:52:35] 2025-05-29 20:52:15,999 | INFO     | . Timing measurements:
[2025-05-29 16:52:35] 2025-05-29 20:52:15,999 | INFO     | . get job = 0 s
[2025-05-29 16:52:35] 2025-05-29 20:52:15,999 | INFO     | . initial setup = 4 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,000 | INFO     | . payload setup = 67 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,000 | INFO     | . stage-in = 0 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,000 | INFO     | . payload execution = 34505 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,000 | INFO     | . stage-out = 3 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,000 | INFO     | . log creation = 0 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,000 | INFO     | ..............................
[2025-05-29 16:52:35] 2025-05-29 20:52:16,253 | INFO     | 
[2025-05-29 16:52:35] 2025-05-29 20:52:16,277 | INFO     | job summary report
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | --------------------------------------------------
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | PanDA job id: 6669234009
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | task id: 44871837
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | errors: (none)
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | pilot state: finished 
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | transexitcode: 0
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | exeerrorcode: 0
[2025-05-29 16:52:35] 2025-05-29 20:52:16,278 | INFO     | exeerrordiag: 
[2025-05-29 16:52:35] 2025-05-29 20:52:16,279 | INFO     | exitcode: 0
[2025-05-29 16:52:35] 2025-05-29 20:52:16,279 | INFO     | exitmsg: OK
[2025-05-29 16:52:35] 2025-05-29 20:52:16,279 | INFO     | cpuconsumptiontime: 73900 s
[2025-05-29 16:52:35] 2025-05-29 20:52:16,279 | INFO     | nevents: 400
[2025-05-29 16:52:35] 2025-05-29 20:52:16,279 | INFO     | neventsw: 0
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | pid: 42041
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | pgrp: 42041
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | corecount: 8
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | event service: False
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | sizes: {0: 2404404, 1: 2405089, 2: 2405288, 3: 2405316, 14: 2405316, 25: 2405344, 35: 2405706, 36: 2405734, 34576: 2444897, 34580: 2453894, 34626: 2454008}
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | --------------------------------------------------
[2025-05-29 16:52:35] 2025-05-29 20:52:16,300 | INFO     | 
[2025-05-29 16:52:35] 2025-05-29 20:52:16,301 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-29 16:52:35] 2025-05-29 20:52:16,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 16:52:35] 2025-05-29 20:52:16,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 16:52:35] 2025-05-29 20:52:16,354 | INFO     | job 6669234009 has completed (purged errors)
[2025-05-29 16:52:35] 2025-05-29 20:52:16,354 | INFO     | overall cleanup function is called
[2025-05-29 16:52:35] 2025-05-29 20:52:17,363 | INFO     | --- collectZombieJob: --- 10, [42041]
[2025-05-29 16:52:35] 2025-05-29 20:52:17,364 | INFO     | zombie collector waiting for pid 42041
[2025-05-29 16:52:35] 2025-05-29 20:52:17,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 16:52:35] 2025-05-29 20:52:17,364 | INFO     | collected zombie processes
[2025-05-29 16:52:35] 2025-05-29 20:52:17,364 | INFO     | will attempt to kill all subprocesses of pid=42041
[2025-05-29 16:52:35] 2025-05-29 20:52:17,641 | INFO     | process IDs to be killed: [42041] (in reverse order)
[2025-05-29 16:52:35] 2025-05-29 20:52:17,744 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 16:52:35] 2025-05-29 20:52:17,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 16:52:35] 2025-05-29 20:52:17,783 | INFO     | did not find any defunct processes belonging to 42041
[2025-05-29 16:52:35] 2025-05-29 20:52:17,830 | INFO     | did not find any defunct processes belonging to 42041
[2025-05-29 16:52:35] 2025-05-29 20:52:17,831 | INFO     | ready for new job
[2025-05-29 16:52:35] 2025-05-29 20:52:17,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 16:52:35] 2025-05-29 20:52:17,865 | INFO     | **************************************
[2025-05-29 16:52:35] 2025-05-29 20:52:17,865 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 16:52:35] 2025-05-29 20:52:17,866 | INFO     | **************************************
[2025-05-29 16:52:35] 2025-05-29 20:52:17,866 | INFO     | 
[2025-05-29 16:52:35] 2025-05-29 20:52:17,871 | INFO     | architecture information:
[2025-05-29 16:52:35] 2025-05-29 20:52:17,885 | INFO     | executing command: cat /etc/os-release
[2025-05-29 16:52:35] 2025-05-29 20:52:18,113 | INFO     | cat /etc/os-release:
[2025-05-29 16:52:35] NAME="CentOS Linux"
[2025-05-29 16:52:35] VERSION="7 (Core)"
[2025-05-29 16:52:35] ID="centos"
[2025-05-29 16:52:35] ID_LIKE="rhel fedora"
[2025-05-29 16:52:35] VERSION_ID="7"
[2025-05-29 16:52:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 16:52:35] ANSI_COLOR="0;31"
[2025-05-29 16:52:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 16:52:35] HOME_URL="https://www.centos.org/"
[2025-05-29 16:52:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 16:52:35] 
[2025-05-29 16:52:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 16:52:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 16:52:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 16:52:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 16:52:35] 
[2025-05-29 16:52:35] 2025-05-29 20:52:18,113 | INFO     | **************************************
[2025-05-29 16:52:35] 2025-05-29 20:52:18,618 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-29 16:52:35] 2025-05-29 20:52:18,675 | INFO     | sufficient remaining disk space (55836672000 B)
[2025-05-29 16:52:35] 2025-05-29 20:52:18,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 16:52:35] 2025-05-29 20:52:18,675 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 16:52:35] 2025-05-29 20:52:18,676 | INFO     | update_server=False
[2025-05-29 16:52:35] 2025-05-29 20:52:18,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 16:52:35] 2025-05-29 20:52:18,676 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 16:52:35] 2025-05-29 20:52:18,676 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 16:52:35] 2025-05-29 20:52:18,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 16:52:35] 2025-05-29 20:52:18,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 16:52:35] 2025-05-29 20:52:18,801 | INFO     | all payload control threads have been joined
[2025-05-29 16:52:35] 2025-05-29 20:52:18,802 | INFO     | all job control threads have been joined
[2025-05-29 16:52:35] 2025-05-29 20:52:18,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 16:52:35] 2025-05-29 20:52:18,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-29 16:52:35] 2025-05-29 20:52:18,866 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-29 16:52:35] 2025-05-29 20:52:18,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 16:52:35] 2025-05-29 20:52:18,866 | INFO     | will abort loop
[2025-05-29 16:52:35] 2025-05-29 20:52:19,100 | INFO     | all data control threads have been joined
[2025-05-29 16:52:35] 2025-05-29 20:52:19,682 | INFO     | [job] retrieve thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:19,809 | INFO     | [payload] control thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:19,814 | INFO     | [job] control thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:19,872 | INFO     | [job] job monitor thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,109 | INFO     | [data] control thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,298 | INFO     | [payload] failed_post thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,353 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,372 | INFO     | [job] validate thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,413 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,764 | INFO     | [payload] validate_post thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,870 | INFO     | [data] copytool_out thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,881 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,961 | INFO     | [data] copytool_in thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:20,973 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:21,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 16:52:35] 2025-05-29 20:52:21,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 16:52:35] 2025-05-29 20:52:22,133 | INFO     | [job] queue monitor thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:25,961 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 16:52:35] 2025-05-29 20:52:27,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140676388759360)>', '<ExcThread(monitor, started 140675815307008)>']
[2025-05-29 16:52:35] 2025-05-29 20:52:27,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 16:52:35] 2025-05-29 20:52:27,730 | INFO     | [monitor] control thread has ended
[2025-05-29 16:52:35] 2025-05-29 20:52:32,391 | INFO     | all workflow threads have been joined
[2025-05-29 16:52:35] 2025-05-29 20:52:32,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 16:52:35] 2025-05-29 20:52:32,392 | INFO     | traces error code: 0
[2025-05-29 16:52:35] 2025-05-29 20:52:32,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 16:52:35] 2025-05-29 20:52:32,986 [wrapper] ==== pilot stdout END ====
[2025-05-29 16:52:35] 2025-05-29 20:52:33,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 16:52:35] 2025-05-29 20:52:33,070 [wrapper] pilotpid: 18699
[2025-05-29 16:52:35] 2025-05-29 20:52:33,118 [wrapper] Pilot exit status: 0
[2025-05-29 16:52:35] 2025-05-29 20:52:33,206 [wrapper] pandaids: 6669234009 6669234009
[2025-05-29 16:52:35] 2025-05-29 20:52:33,267 [wrapper] cleanup supervisor_pilot 29715 18700
[2025-05-29 16:52:35] 2025-05-29 20:52:33,271 [wrapper] Test setup, not cleaning
[2025-05-29 16:52:35] 2025-05-29 20:52:33,274 [wrapper] apfmon messages muted
[2025-05-29 16:52:35] 2025-05-29 20:52:33,289 [wrapper] ==== wrapper stdout END ====
[2025-05-29 16:52:35] 2025-05-29 20:52:33,307 [wrapper] ==== wrapper stderr END ====
[2025-05-29 16:52:35]  *** Error codes and diagnostics ***
[2025-05-29 16:52:35]     "exeErrorCode": 0,
[2025-05-29 16:52:35]     "exeErrorDiag": "",
[2025-05-29 16:52:35]     "pilotErrorCode": 0,
[2025-05-29 16:52:35]     "pilotErrorDiag": "",
[2025-05-29 16:52:35]  *** Listing of results directory ***
[2025-05-29 16:52:35] total 637588
[2025-05-29 16:52:35] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas      5111 May 29 00:02 queuedata.json
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas    495897 May 29 00:02 pilot3.tar.gz
[2025-05-29 16:52:35] -rwx------ 1 boincer umatlas     37140 May 29 00:03 runpilot2-wrapper.sh
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas       100 May 29 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 16:52:35] -rwxr-xr-x 1 boincer umatlas      7986 May 29 06:20 run_atlas
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas       105 May 29 06:20 job.xml
[2025-05-29 16:52:35] -rw-r--r-- 3 boincer umatlas 223452213 May 29 06:20 EVNT.44871834._003674.pool.root.1
[2025-05-29 16:52:35] -rw-r--r-- 3 boincer umatlas 223452213 May 29 06:20 ATLAS.root_0
[2025-05-29 16:52:35] -rw-r--r-- 2 boincer umatlas     15093 May 29 06:20 start_atlas.sh
[2025-05-29 16:52:35] drwxrwx--x 2 boincer umatlas      4096 May 29 06:20 shared
[2025-05-29 16:52:35] -rw-r--r-- 2 boincer umatlas    508876 May 29 06:20 input.tar.gz
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas         0 May 29 06:20 boinc_lockfile
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas      2558 May 29 07:13 pandaJob.out
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas    993012 May 29 07:13 agis_schedconf.cvmfs.json
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas      6131 May 29 16:46 init_data.xml
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas 195465910 May 29 16:49 HITS.44871837._094574.pool.root.1
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas       531 May 29 16:50 boinc_task_state.xml
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas      1062 May 29 16:51 memory_monitor_summary.json
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas   1603667 May 29 16:51 agis_ddmendpoints.agis.ALL.json
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas    555844 May 29 16:51 log.44871837._094574.job.log.tgz.1
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas        96 May 29 16:51 pilot_heartbeat.json
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas      7752 May 29 16:52 heartbeat.json
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas      8192 May 29 16:52 boinc_mmap_file
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas        28 May 29 16:52 wrapper_checkpoint.txt
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas      4662 May 29 16:52 pilotlog.txt
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas   2784263 May 29 16:52 log.44871837._094574.job.log.1
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas       357 May 29 16:52 output.list
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas       620 May 29 16:52 runtime_log
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas   3358720 May 29 16:52 result.tar.gz
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas      8740 May 29 16:52 runtime_log.err
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas       787 May 29 16:52 oygNDmUfje7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXidKDmwvphvn.diag
[2025-05-29 16:52:35] -rw-r--r-- 1 boincer umatlas     23193 May 29 16:52 stderr.txt
[2025-05-29 16:52:35] HITS file was successfully produced:
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas 195465910 May 29 16:49 shared/HITS.pool.root.1
[2025-05-29 16:52:35]  *** Contents of shared directory: ***
[2025-05-29 16:52:35] total 412904
[2025-05-29 16:52:35] -rw-r--r-- 3 boincer umatlas 223452213 May 29 06:20 ATLAS.root_0
[2025-05-29 16:52:35] -rw-r--r-- 2 boincer umatlas     15093 May 29 06:20 start_atlas.sh
[2025-05-29 16:52:35] -rw-r--r-- 2 boincer umatlas    508876 May 29 06:20 input.tar.gz
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas 195465910 May 29 16:49 HITS.pool.root.1
[2025-05-29 16:52:35] -rw------- 1 boincer umatlas   3358720 May 29 16:52 result.tar.gz
16:52:37 (7603): run_atlas exited; CPU time 74759.028486
16:52:37 (7603): called boinc_finish(0)

</stderr_txt>
]]>

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