Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:34:45 (9173): wrapper (7.7.26015): starting
20:34:45 (9173): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 20:34:45] Arguments: --nthreads 8
[2025-05-29 20:34:45] Threads: 8
[2025-05-29 20:34:45] Checking for CVMFS
[2025-05-29 20:34:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 20:34:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 20:34:46] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 20:34:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 20:34:47] 2.11.2.0 347 24897 89372 146572 3 59 14539995 25165825 4635 130560 0 13437686 99.819 14459873 2437 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 20:34:47] CVMFS is ok
[2025-05-29 20:34:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 20:34:47] Checking for apptainer binary...
[2025-05-29 20:34:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 20:34:47] Running /usr/bin/apptainer --version
[2025-05-29 20:34:47] apptainer version 1.3.2-1.el7
[2025-05-29 20:34:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 20:35:00] cg-vwn289.simple-grid.lan
[2025-05-29 20:35:00] apptainer works
[2025-05-29 20:35:00] Set ATHENA_PROC_NUMBER=8
[2025-05-29 20:35:00] Set ATHENA_CORE_NUMBER=8
[2025-05-29 20:35:01] Starting ATLAS job with PandaID=6669089979
[2025-05-29 20:35:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 02:12:40]  *** The last 200 lines of the pilot log: ***
[2025-05-30 02:12:40] 2025-05-29 23:52:45,006 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 02:12:40] 2025-05-29 23:52:45,006 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 02:12:40] 2025-05-29 23:52:45,006 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 02:12:40] 2025-05-29 23:52:45,006 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 02:12:40] 2025-05-29 23:52:45,013 | INFO     | fitting pss+swap vs Time
[2025-05-30 02:12:40] 2025-05-29 23:52:45,014 | INFO     | sum of square deviations: 8372156975.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,017 | INFO     | sum of deviations: 129448891566.50002
[2025-05-30 02:12:40] 2025-05-29 23:52:45,017 | INFO     | mean x: 1748553518.5
[2025-05-30 02:12:40] 2025-05-29 23:52:45,017 | INFO     | mean y: 2441540.9966666666
[2025-05-30 02:12:40] 2025-05-29 23:52:45,017 | INFO     | -- intersect: -27033400654.79883
[2025-05-30 02:12:40] 2025-05-29 23:52:45,018 | INFO     | intersect: -27033400654.79883
[2025-05-30 02:12:40] 2025-05-29 23:52:45,018 | INFO     | chi2: 7.24965270805863
[2025-05-30 02:12:40] 2025-05-29 23:52:45,019 | INFO     | sum of square deviations: 7960484140.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,022 | INFO     | sum of deviations: 146919387183.99997
[2025-05-30 02:12:40] 2025-05-29 23:52:45,022 | INFO     | mean x: 1748553366.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,022 | INFO     | mean y: 2447913.257627119
[2025-05-30 02:12:40] 2025-05-29 23:52:45,022 | INFO     | -- intersect: -32269004987.500294
[2025-05-30 02:12:40] 2025-05-29 23:52:45,022 | INFO     | intersect: -32269004987.500294
[2025-05-30 02:12:40] 2025-05-29 23:52:45,023 | INFO     | chi2: 6.528344504983664
[2025-05-30 02:12:40] 2025-05-29 23:52:45,023 | INFO     | current chi2=6.528344504983664 (change=9.949555270049936 %)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,023 | INFO     | right removable region: 294
[2025-05-30 02:12:40] 2025-05-29 23:52:45,024 | INFO     | sum of square deviations: 7960484140.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,034 | INFO     | sum of deviations: 25580315291.00001
[2025-05-30 02:12:40] 2025-05-29 23:52:45,034 | INFO     | mean x: 1748553671.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,034 | INFO     | mean y: 2479992.128813559
[2025-05-30 02:12:40] 2025-05-29 23:52:45,034 | INFO     | -- intersect: -5616343363.433516
[2025-05-30 02:12:40] 2025-05-29 23:52:45,034 | INFO     | intersect: -5616343363.433516
[2025-05-30 02:12:40] 2025-05-29 23:52:45,035 | INFO     | chi2: 2.4970743542302887
[2025-05-30 02:12:40] 2025-05-29 23:52:45,035 | INFO     | current chi2=2.4970743542302887 (change=65.55594516335148 %)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,036 | INFO     | sum of square deviations: 7562532492.5
[2025-05-30 02:12:40] 2025-05-29 23:52:45,038 | INFO     | sum of deviations: -30722359579.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,039 | INFO     | mean x: 1748553823.5
[2025-05-30 02:12:40] 2025-05-29 23:52:45,039 | INFO     | mean y: 2501477.0344827585
[2025-05-30 02:12:40] 2025-05-29 23:52:45,039 | INFO     | -- intersect: 7105902270.628138
[2025-05-30 02:12:40] 2025-05-29 23:52:45,039 | INFO     | intersect: 7105902270.628138
[2025-05-30 02:12:40] 2025-05-29 23:52:45,039 | INFO     | chi2: 0.9141491388705492
[2025-05-30 02:12:40] 2025-05-29 23:52:45,040 | INFO     | current chi2=0.9141491388705492 (change=63.39119268427507 %)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,040 | INFO     | sum of square deviations: 7178069470.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,043 | INFO     | sum of deviations: -31393174810.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,043 | INFO     | mean x: 1748553976.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,043 | INFO     | mean y: 2501713.543859649
[2025-05-30 02:12:40] 2025-05-29 23:52:45,043 | INFO     | -- intersect: 7649775240.598279
[2025-05-30 02:12:40] 2025-05-29 23:52:45,043 | INFO     | intersect: 7649775240.598279
[2025-05-30 02:12:40] 2025-05-29 23:52:45,044 | INFO     | chi2: 0.8875369202725856
[2025-05-30 02:12:40] 2025-05-29 23:52:45,044 | INFO     | current chi2=0.8875369202725856 (change=2.9111462743205725 %)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,044 | INFO     | left removable region: 30
[2025-05-30 02:12:40] 2025-05-29 23:52:45,044 | INFO     | sum of square deviations: 5705372090.0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,047 | INFO     | sum of deviations: 9672985116.5
[2025-05-30 02:12:40] 2025-05-29 23:52:45,047 | INFO     | mean x: 1748554250.5
[2025-05-30 02:12:40] 2025-05-29 23:52:45,047 | INFO     | mean y: 2499912.367424242
[2025-05-30 02:12:40] 2025-05-29 23:52:45,047 | INFO     | -- intersect: -2962028776.326623
[2025-05-30 02:12:40] 2025-05-29 23:52:45,047 | INFO     | intersect: -2962028776.326623
[2025-05-30 02:12:40] 2025-05-29 23:52:45,048 | INFO     | chi2: 0.0018936729606192412
[2025-05-30 02:12:40] 2025-05-29 23:52:45,048 | INFO     | -- intersect: -2962028776.326623
[2025-05-30 02:12:40] 2025-05-29 23:52:45,048 | INFO     | current memory leak: 1.70 B/s (using 264 data points, chi2=0.00)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,054 | INFO     | ..............................
[2025-05-30 02:12:40] 2025-05-29 23:52:45,054 | INFO     | . Timing measurements:
[2025-05-30 02:12:40] 2025-05-29 23:52:45,054 | INFO     | . get job = 0 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,054 | INFO     | . initial setup = 8 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,060 | INFO     | . payload setup = 170 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,060 | INFO     | . stage-in = 0 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,060 | INFO     | . payload execution = 18406 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,060 | INFO     | . stage-out = 3 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,060 | INFO     | . log creation = 1 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,061 | INFO     | ..............................
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | 
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | job summary report
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | --------------------------------------------------
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | PanDA job id: 6669089979
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | task id: 44871837
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | errors: (none)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | pilot state: finished 
[2025-05-30 02:12:40] 2025-05-29 23:52:45,212 | INFO     | transexitcode: 0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | exeerrorcode: 0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | exeerrordiag: 
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | exitcode: 0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | exitmsg: OK
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | cpuconsumptiontime: 69757 s
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | nevents: 400
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | neventsw: 0
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | pid: 22735
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | pgrp: 22735
[2025-05-30 02:12:40] 2025-05-29 23:52:45,213 | INFO     | corecount: 8
[2025-05-30 02:12:40] 2025-05-29 23:52:45,214 | INFO     | event service: False
[2025-05-30 02:12:40] 2025-05-29 23:52:45,214 | INFO     | sizes: {0: 2404406, 1: 2405262, 2: 2405290, 12: 2405290, 23: 2405318, 34: 2405346, 45: 2405502, 55: 2405530, 66: 2405558, 77: 2405586, 87: 2405642, 89: 2406156, 98
[2025-05-30 02:12:40] 2025-05-29 23:52:45,214 | INFO     | --------------------------------------------------
[2025-05-30 02:12:40] 2025-05-29 23:52:45,214 | INFO     | 
[2025-05-30 02:12:40] 2025-05-29 23:52:45,214 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-05-30 02:12:40] 2025-05-29 23:52:45,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 02:12:40] 2025-05-29 23:52:45,565 | INFO     | job 6669089979 has completed (purged errors)
[2025-05-30 02:12:40] 2025-05-29 23:52:45,566 | INFO     | overall cleanup function is called
[2025-05-30 02:12:40] 2025-05-29 23:52:46,575 | INFO     | --- collectZombieJob: --- 10, [22735]
[2025-05-30 02:12:40] 2025-05-29 23:52:46,575 | INFO     | zombie collector waiting for pid 22735
[2025-05-30 02:12:40] 2025-05-29 23:52:46,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 02:12:40] 2025-05-29 23:52:46,575 | INFO     | collected zombie processes
[2025-05-30 02:12:40] 2025-05-29 23:52:46,575 | INFO     | will attempt to kill all subprocesses of pid=22735
[2025-05-30 02:12:40] 2025-05-29 23:52:46,686 | INFO     | process IDs to be killed: [22735] (in reverse order)
[2025-05-30 02:12:40] 2025-05-29 23:52:47,355 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 02:12:40] 2025-05-29 23:52:47,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 02:12:40] 2025-05-29 23:52:47,359 | INFO     | did not find any defunct processes belonging to 22735
[2025-05-30 02:12:40] 2025-05-29 23:52:47,362 | INFO     | did not find any defunct processes belonging to 22735
[2025-05-30 02:12:40] 2025-05-29 23:52:47,362 | INFO     | ready for new job
[2025-05-30 02:12:40] 2025-05-29 23:52:47,362 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 02:12:40] 2025-05-29 23:52:47,364 | INFO     | **************************************
[2025-05-30 02:12:40] 2025-05-29 23:52:47,364 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 02:12:40] 2025-05-29 23:52:47,365 | INFO     | **************************************
[2025-05-30 02:12:40] 2025-05-29 23:52:47,365 | INFO     | 
[2025-05-30 02:12:40] 2025-05-29 23:52:47,365 | INFO     | pilot is running in a VM
[2025-05-30 02:12:40] 2025-05-29 23:52:47,365 | INFO     | architecture information:
[2025-05-30 02:12:40] 2025-05-29 23:52:47,378 | INFO     | executing command: cat /etc/os-release
[2025-05-30 02:12:40] 2025-05-29 23:52:47,564 | INFO     | cat /etc/os-release:
[2025-05-30 02:12:40] NAME="CentOS Linux"
[2025-05-30 02:12:40] VERSION="7 (Core)"
[2025-05-30 02:12:40] ID="centos"
[2025-05-30 02:12:40] ID_LIKE="rhel fedora"
[2025-05-30 02:12:40] VERSION_ID="7"
[2025-05-30 02:12:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 02:12:40] ANSI_COLOR="0;31"
[2025-05-30 02:12:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 02:12:40] HOME_URL="https://www.centos.org/"
[2025-05-30 02:12:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 02:12:40] 
[2025-05-30 02:12:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 02:12:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 02:12:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 02:12:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 02:12:40] 
[2025-05-30 02:12:40] 2025-05-29 23:52:47,564 | INFO     | **************************************
[2025-05-30 02:12:40] 2025-05-29 23:52:48,068 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-05-30 02:12:40] 2025-05-29 23:52:48,223 | INFO     | sufficient remaining disk space (495527657472 B)
[2025-05-30 02:12:40] 2025-05-29 23:52:48,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 02:12:40] 2025-05-29 23:52:48,224 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 02:12:40] 2025-05-29 23:52:48,224 | INFO     | update_server=False
[2025-05-30 02:12:40] 2025-05-29 23:52:48,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 02:12:40] 2025-05-29 23:52:48,570 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-30 02:12:40] 2025-05-29 23:52:48,570 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-30 02:12:40] 2025-05-29 23:52:48,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 02:12:40] 2025-05-29 23:52:48,570 | INFO     | will abort loop
[2025-05-30 02:12:40] 2025-05-29 23:52:48,770 | INFO     | all data control threads have been joined
[2025-05-30 02:12:40] 2025-05-29 23:52:48,981 | INFO     | all payload control threads have been joined
[2025-05-30 02:12:40] 2025-05-29 23:52:49,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 02:12:40] 2025-05-29 23:52:49,144 | INFO     | all job control threads have been joined
[2025-05-30 02:12:40] 2025-05-29 23:52:49,207 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 02:12:40] 2025-05-29 23:52:49,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 02:12:40] 2025-05-29 23:52:49,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 02:12:40] 2025-05-29 23:52:49,230 | INFO     | [job] retrieve thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 02:12:40] 2025-05-29 23:52:49,305 | INFO     | [data] copytool_in thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,515 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,576 | INFO     | [job] job monitor thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,695 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,776 | INFO     | [data] control thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,882 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:49,987 | INFO     | [payload] control thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:50,150 | INFO     | [job] control thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:50,160 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:50,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 02:12:40] 2025-05-29 23:52:50,409 | INFO     | [payload] failed_post thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:50,456 | INFO     | [payload] validate_post thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:50,576 | INFO     | [job] validate thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:51,100 | INFO     | [data] copytool_out thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:51,243 | INFO     | [job] queue monitor thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:53,279 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 02:12:40] 2025-05-29 23:52:55,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894692009792)>', '<ExcThread(monitor, started 139894097688320)>']
[2025-05-30 02:12:40] 2025-05-29 23:52:55,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 02:12:40] 2025-05-29 23:52:55,243 | INFO     | [monitor] control thread has ended
[2025-05-30 02:12:40] 2025-05-29 23:53:00,043 | INFO     | all workflow threads have been joined
[2025-05-30 02:12:40] 2025-05-29 23:53:00,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 02:12:40] 2025-05-29 23:53:00,043 | INFO     | traces error code: 0
[2025-05-30 02:12:40] 2025-05-29 23:53:00,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 02:12:40] 2025-05-29 23:53:00,413 [wrapper] ==== pilot stdout END ====
[2025-05-30 02:12:40] 2025-05-29 23:53:00,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 02:12:40] 2025-05-29 23:53:00,600 [wrapper] pilotpid: 16155
[2025-05-30 02:12:40] 2025-05-29 23:53:00,665 [wrapper] Pilot exit status: 0
[2025-05-30 02:12:40] 2025-05-29 23:53:01,073 [wrapper] pandaids: 6669089979
[2025-05-30 02:12:40] 2025-05-29 23:53:01,860 [wrapper] cleanup supervisor_pilot 17855 16156
[2025-05-30 02:12:40] 2025-05-29 23:53:01,947 [wrapper] Test setup, not cleaning
[2025-05-30 02:12:40] 2025-05-29 23:53:02,020 [wrapper] apfmon messages muted
[2025-05-30 02:12:40] 2025-05-29 23:53:02,092 [wrapper] ==== wrapper stdout END ====
[2025-05-30 02:12:40] 2025-05-29 23:53:02,182 [wrapper] ==== wrapper stderr END ====
[2025-05-30 02:12:40]  *** Error codes and diagnostics ***
[2025-05-30 02:12:40]     "exeErrorCode": 0,
[2025-05-30 02:12:40]     "exeErrorDiag": "",
[2025-05-30 02:12:40]     "pilotErrorCode": 0,
[2025-05-30 02:12:40]     "pilotErrorDiag": "",
[2025-05-30 02:12:40]  *** Listing of results directory ***
[2025-05-30 02:12:40] total 419476
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc    495897 May 29 03:22 pilot3.tar.gz
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc      5111 May 29 03:28 queuedata.json
[2025-05-30 02:12:40] -rwx------. 1 boinc boinc     37140 May 29 03:29 runpilot2-wrapper.sh
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc       100 May 29 20:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 02:12:40] -rwxr-xr-x. 1 boinc boinc      7986 May 29 20:34 run_atlas
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc       105 May 29 20:34 job.xml
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc      6371 May 29 20:34 init_data.xml
[2025-05-30 02:12:40] -rw-r--r--. 2 boinc boinc 224727329 May 29 20:34 EVNT.44871834._003621.pool.root.1
[2025-05-30 02:12:40] -rw-r--r--. 2 boinc boinc     15093 May 29 20:34 start_atlas.sh
[2025-05-30 02:12:40] drwxrwx--x. 2 boinc boinc        68 May 29 20:34 shared
[2025-05-30 02:12:40] -rw-r--r--. 2 boinc boinc    508876 May 29 20:34 input.tar.gz
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc         0 May 29 20:34 boinc_lockfile
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc      2559 May 29 20:35 pandaJob.out
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc    992706 May 29 20:38 agis_schedconf.cvmfs.json
[2025-05-30 02:12:40] drwx------. 4 boinc boinc      4096 May 29 20:38 pilot3
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc 196966181 May 30 01:49 HITS.44871837._093128.pool.root.1
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc       531 May 30 01:49 boinc_task_state.xml
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc      1013 May 30 01:50 memory_monitor_summary.json
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc   1603667 May 30 01:51 agis_ddmendpoints.agis.ALL.json
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc    419872 May 30 01:51 log.44871837._093128.job.log.tgz.1
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc        95 May 30 01:52 pilot_heartbeat.json
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc      7688 May 30 01:52 heartbeat.json
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc      4602 May 30 01:53 pilotlog.txt
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc   1592917 May 30 01:53 log.44871837._093128.job.log.1
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc       357 May 30 01:53 output.list
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc       620 May 30 01:53 runtime_log
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc   2027520 May 30 01:53 result.tar.gz
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc      8659 May 30 01:53 runtime_log.err
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc       656 May 30 01:53 0xbLDmzFhe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmROUKDmc6fBGn.diag
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc      8192 May 30 02:12 boinc_mmap_file
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc        28 May 30 02:12 wrapper_checkpoint.txt
[2025-05-30 02:12:40] -rw-r--r--. 1 boinc boinc     20488 May 30 02:12 stderr.txt
[2025-05-30 02:12:40] HITS file was successfully produced:
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc 196966181 May 30 01:49 shared/HITS.pool.root.1
[2025-05-30 02:12:40]  *** Contents of shared directory: ***
[2025-05-30 02:12:40] total 414312
[2025-05-30 02:12:40] -rw-r--r--. 2 boinc boinc 224727329 May 29 20:34 ATLAS.root_0
[2025-05-30 02:12:40] -rw-r--r--. 2 boinc boinc     15093 May 29 20:34 start_atlas.sh
[2025-05-30 02:12:40] -rw-r--r--. 2 boinc boinc    508876 May 29 20:34 input.tar.gz
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc 196966181 May 30 01:49 HITS.pool.root.1
[2025-05-30 02:12:40] -rw-------. 1 boinc boinc   2027520 May 30 01:53 result.tar.gz
02:12:42 (9173): run_atlas exited; CPU time 70017.184429
02:12:42 (9173): called boinc_finish(0)

</stderr_txt>
]]>

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