Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
06:14:00 (1508084): wrapper (7.7.26015): starting
06:14:00 (1508084): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 06:14:00] Arguments: --nthreads 4
[2025-06-05 06:14:00] Threads: 4
[2025-06-05 06:14:00] Checking for CVMFS
[2025-06-05 06:14:00] No cvmfs_config command found, will try listing directly
[2025-06-05 06:14:00] CVMFS is ok
[2025-06-05 06:14:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 06:14:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 06:14:00] Further information can be found at the LHC@home message board.
[2025-06-05 06:14:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:14:00] Checking for apptainer binary...
[2025-06-05 06:14:00] which: no apptainer in ((null))
[2025-06-05 06:14:00] apptainer is not installed, using version from CVMFS
[2025-06-05 06:14:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 06:14:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-05 06:14:01] apptainer works
[2025-06-05 06:14:01] Set ATHENA_PROC_NUMBER=4
[2025-06-05 06:14:01] Set ATHENA_CORE_NUMBER=4
[2025-06-05 06:14:01] Starting ATLAS job with PandaID=6669088837
[2025-06-05 06:14:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:28:35 (2555636): wrapper (7.7.26015): starting
11:28:35 (2555636): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 11:28:35] Arguments: --nthreads 4
[2025-06-05 11:28:35] Threads: 4
[2025-06-05 11:28:35] This job has been restarted, cleaning up previous attempt
[2025-06-05 11:28:36] Checking for CVMFS
[2025-06-05 11:28:36] No cvmfs_config command found, will try listing directly
[2025-06-05 11:28:36] CVMFS is ok
[2025-06-05 11:28:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 11:28:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 11:28:36] Further information can be found at the LHC@home message board.
[2025-06-05 11:28:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:28:36] Checking for apptainer binary...
[2025-06-05 11:28:36] which: no apptainer in ((null))
[2025-06-05 11:28:36] apptainer is not installed, using version from CVMFS
[2025-06-05 11:28:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:28:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-05 11:28:36] apptainer works
[2025-06-05 11:28:36] Set ATHENA_PROC_NUMBER=4
[2025-06-05 11:28:36] Set ATHENA_CORE_NUMBER=4
[2025-06-05 11:28:36] Starting ATLAS job with PandaID=6669088837
[2025-06-05 11:28:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:32:38] Job failed
[2025-06-05 11:32:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-05 11:32:38] ++ pwd
[2025-06-05 11:32:38] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot72/slots/0/
[2025-06-05 11:32:38] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot72/slots/0/
[2025-06-05 11:32:38] + mv ATLAS.root_0 EVNT.44871834._002162.pool.root.1
[2025-06-05 11:32:38] mv: 'ATLAS.root_0' and 'EVNT.44871834._002162.pool.root.1' are the same file
[2025-06-05 11:32:38] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-05 11:32:38] + umask 077
[2025-06-05 11:32:38] ++ date +%s
[2025-06-05 11:32:38] + ACCOUNTING_STARTTIME=1749115716
[2025-06-05 11:32:38] + echo 'Detecting resource accounting method available for the job.'
[2025-06-05 11:32:38] Detecting resource accounting method available for the job.
[2025-06-05 11:32:38] + JOB_ACCOUNTING=
[2025-06-05 11:32:38] + command -v arc-job-cgroup
[2025-06-05 11:32:38] + '[' -z '' ']'
[2025-06-05 11:32:38] + GNU_TIME=/usr/bin/time
[2025-06-05 11:32:38] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-05 11:32:38] Looking for /usr/bin/time tool for accounting measurements
[2025-06-05 11:32:38] + '[' '!' -z /usr/bin/time ']'
[2025-06-05 11:32:38] + /usr/bin/time --version
[2025-06-05 11:32:38] + echo 'GNU time found and will be used for job accounting.'
[2025-06-05 11:32:38] GNU time found and will be used for job accounting.
[2025-06-05 11:32:38] + JOB_ACCOUNTING=gnutime
[2025-06-05 11:32:38] + '[' -z gnutime ']'
[2025-06-05 11:32:38] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 11:32:38] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 11:32:38] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-29/BOINC_MCORE/6669088837.out
[2025-06-05 11:32:38] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-29/BOINC_MCORE/6669088837.out
[2025-06-05 11:32:38] + export PILOT_NOKILL=YES
[2025-06-05 11:32:38] + PILOT_NOKILL=YES
[2025-06-05 11:32:38] + export GRID_GLOBAL_JOBID=H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-05 11:32:38] + GRID_GLOBAL_JOBID=H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-05 11:32:38] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-05 11:32:38] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-05 11:32:38] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 11:32:38] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 11:32:38] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-05 11:32:38] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-05 11:32:38] ++ pwd
[2025-06-05 11:32:38] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot72/slots/0
[2025-06-05 11:32:38] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-05 11:32:38] ++ pwd
[2025-06-05 11:32:38] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot72/slots/0/log.44871837._092765.job.log.1
[2025-06-05 11:32:38] ++ pwd
[2025-06-05 11:32:38] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot72/slots/0/log.44871837._092765.job.log.1
[2025-06-05 11:32:38] ++ pwd
[2025-06-05 11:32:38] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot72/slots/0.diag
[2025-06-05 11:32:38] + '[' '!' -z '' ']'
[2025-06-05 11:32:38] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-05 11:32:38] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-05 11:32:38] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-05 11:32:38] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-05 11:32:38] + '[' '!' -z '' ']'
[2025-06-05 11:32:38] + '[' -z yes ']'
[2025-06-05 11:32:38] ++ pwd
[2025-06-05 11:32:38] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag
[2025-06-05 11:32:38] + runtimeenvironments=
[2025-06-05 11:32:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 11:32:38] + RTE_function_0 1
[2025-06-05 11:32:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 11:32:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 11:32:38] + export BOINC_APP=ATLAS
[2025-06-05 11:32:38] + BOINC_APP=ATLAS
[2025-06-05 11:32:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 11:32:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 11:32:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 11:32:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 11:32:38] + '[' -z 1 ']'
[2025-06-05 11:32:38] + '[' 1 == 1 ']'
[2025-06-05 11:32:38] + shift
[2025-06-05 11:32:38] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot72/slots/0/
[2025-06-05 11:32:38] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot72/slots/0/
[2025-06-05 11:32:38] + '[' 0 -ne 0 ']'
[2025-06-05 11:32:38] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-05 11:32:38] + '[' -f /etc/os-release ']'
[2025-06-05 11:32:38] +++ cat /etc/os-release
[2025-06-05 11:32:38] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-05 11:32:38] +++ NAME='CentOS Linux'
[2025-06-05 11:32:38] +++ VERSION='7 (Core)'
[2025-06-05 11:32:38] +++ ID=centos
[2025-06-05 11:32:38] +++ ID_LIKE='rhel fedora'
[2025-06-05 11:32:38] +++ VERSION_ID=7
[2025-06-05 11:32:38] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-05 11:32:38] +++ ANSI_COLOR='0;31'
[2025-06-05 11:32:38] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-05 11:32:38] +++ HOME_URL=https://www.centos.org/
[2025-06-05 11:32:38] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-05 11:32:38] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-05 11:32:38] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-05 11:32:38] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-05 11:32:38] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-05 11:32:38] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-05 11:32:38] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-05 11:32:38] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-05 11:32:38] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-05 11:32:38] + HOME=/scratch/boinc/var/slot72/slots/0
[2025-06-05 11:32:38] + export HOME
[2025-06-05 11:32:38] + cd /scratch/boinc/var/slot72/slots/0
[2025-06-05 11:32:38] + '[' '!' -z '' ']'
[2025-06-05 11:32:38] + '[' -z '' ']'
[2025-06-05 11:32:38] ++ /bin/hostname -f
[2025-06-05 11:32:38] + nodename=skurut14.grid.cesnet.cz
[2025-06-05 11:32:38] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-05 11:32:38] + echo Processors=2
[2025-06-05 11:32:38] + echo Nodecount=1
[2025-06-05 11:32:38] + echo Benchmark=HEPSPEC:1.0
[2025-06-05 11:32:38] + executable=./runpilot2-wrapper.sh
[2025-06-05 11:32:38] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-05 11:32:38] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-05 11:32:38] ++ head -n 1
[2025-06-05 11:32:38] ++ tr -d '\0'
[2025-06-05 11:32:38] + line1='#!/bin/bash'
[2025-06-05 11:32:38] ++ echo '#!/bin/bash'
[2025-06-05 11:32:38] ++ sed -n 's/^#! *//p'
[2025-06-05 11:32:38] + shebang=/bin/bash
[2025-06-05 11:32:38] ++ echo /bin/bash
[2025-06-05 11:32:38] ++ awk '{print $1}'
[2025-06-05 11:32:38] + interpreter=/bin/bash
[2025-06-05 11:32:38] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-05 11:32:38] + '[' x/bin/bash = x ']'
[2025-06-05 11:32:38] + type /bin/bash
[2025-06-05 11:32:38] + '[' xgnutime = xgnutime ']'
[2025-06-05 11:32:38] + /usr/bin/time -o /scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-05 11:32:38] + RESULT=2
[2025-06-05 11:32:38] + sed -i -e /nodename=/d /scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag
[2025-06-05 11:32:38] ++ grep domain_name init_data.xml
[2025-06-05 11:32:38] ++ awk -F '>' '{print $2}'
[2025-06-05 11:32:38] ++ awk -F '<' '{print $1}'
[2025-06-05 11:32:38] ++ sed -e 's# #_#g'
[2025-06-05 11:32:38] + hostname=skurut14.grid.cesnet.cz
[2025-06-05 11:32:38] ++ grep user_name init_data.xml
[2025-06-05 11:32:38] ++ awk -F '>' '{print $2}'
[2025-06-05 11:32:38] ++ awk -F '<' '{print $1}'
[2025-06-05 11:32:38] ++ sed -e 's# #_#g'
[2025-06-05 11:32:38] + username=praguelcg2
[2025-06-05 11:32:38] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-05 11:32:38] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-05 11:32:38] + '[' -n 4 ']'
[2025-06-05 11:32:38] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag
[2025-06-05 11:32:38] + echo exitcode=2
[2025-06-05 11:32:38] + runtimeenvironments=
[2025-06-05 11:32:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 11:32:38] + RTE_function_0 2
[2025-06-05 11:32:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 11:32:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 11:32:38] + export BOINC_APP=ATLAS
[2025-06-05 11:32:38] + BOINC_APP=ATLAS
[2025-06-05 11:32:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 11:32:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 11:32:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 11:32:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 11:32:38] + '[' -z 2 ']'
[2025-06-05 11:32:38] + '[' 2 == 1 ']'
[2025-06-05 11:32:38] + '[' 0 -ne 0 ']'
[2025-06-05 11:32:38] + echo 'zip all output files'
[2025-06-05 11:32:38] + flist='*.diag '
[2025-06-05 11:32:38] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-05 11:32:38] + '[' -e ./heartbeat.json ']'
[2025-06-05 11:32:38] + flist='*.diag  ./heartbeat.json'
[2025-06-05 11:32:38] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-05 11:32:38] + '[' -e ./output.list ']'
[2025-06-05 11:32:38] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-05 11:32:38] + '[' -e ./log.44871837._092765.job.log.1 ']'
[2025-06-05 11:32:38] + flist='*.diag  ./heartbeat.json ./log.44871837._092765.job.log.1'
[2025-06-05 11:32:38] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-05 11:32:38] + '[' -e ./log.44871837._092765.job.log.1 ']'
[2025-06-05 11:32:38] + flist='*.diag  ./heartbeat.json ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1'
[2025-06-05 11:32:38] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-05 11:32:38] + '[' -e ./gmlog/ ']'
[2025-06-05 11:32:38] + '[' -f output.list ']'
[2025-06-05 11:32:38] + tar cvf result.tar.gz H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag ./heartbeat.json ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1
[2025-06-05 11:32:38] + '[' xgnutime = xcgroup ']'
[2025-06-05 11:32:38] + '[' -n '' ']'
[2025-06-05 11:32:38] + '[' -n '' ']'
[2025-06-05 11:32:38] ++ date +%s
[2025-06-05 11:32:38] + ACCOUNTING_ENDTIME=1749115907
[2025-06-05 11:32:38] ++ date -d '1970-01-01 UTC 1749115716 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 11:32:38] + echo LRMSStartTime=20250605112836Z
[2025-06-05 11:32:38] ++ date -d '1970-01-01 UTC 1749115907 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 11:32:38] + echo LRMSEndTime=20250605113147Z
[2025-06-05 11:32:38] + echo walltime=191
[2025-06-05 11:32:38] + echo exitcode=2
[2025-06-05 11:32:38] + exit 2
[2025-06-05 11:32:38] ./log.44871837._092765.job.log.1
[2025-06-05 11:32:38] ./pilotlog.txt
[2025-06-05 11:32:38] ./runtime_log.err
[2025-06-05 11:32:38] ./PanDA_Pilot-6669088837/prmon.log
[2025-06-05 11:32:38] ./PanDA_Pilot-6669088837/pilotlog.txt
[2025-06-05 11:32:38] ./PanDA_Pilot-6669088837/PoolFileCatalog.xml
[2025-06-05 11:32:38] ./PanDA_Pilot-6669088837/log.EVNTtoHITS
[2025-06-05 11:32:38] ./runtime_log
[2025-06-05 11:32:38] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-05 11:32:38] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-05 11:32:38] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-05 11:32:38] ./pilot3/pilot/util/loggingsupport.py
[2025-06-05 11:32:38] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-05 11:32:38] ./pilot3/pilot/util/realtimelogger.py
07:00:00 (2636360): wrapper (7.7.26015): starting
07:00:00 (2636360): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 07:00:00] Arguments: --nthreads 4
[2025-06-06 07:00:00] Threads: 4
[2025-06-06 07:00:00] This job has been restarted, cleaning up previous attempt
[2025-06-06 07:00:00] Checking for CVMFS
[2025-06-06 07:00:00] No cvmfs_config command found, will try listing directly
[2025-06-06 07:00:00] CVMFS is ok
[2025-06-06 07:00:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 07:00:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 07:00:00] Further information can be found at the LHC@home message board.
[2025-06-06 07:00:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 07:00:00] Checking for apptainer binary...
[2025-06-06 07:00:00] which: no apptainer in ((null))
[2025-06-06 07:00:00] apptainer is not installed, using version from CVMFS
[2025-06-06 07:00:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 07:00:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-06 07:00:00] apptainer works
[2025-06-06 07:00:00] Set ATHENA_PROC_NUMBER=4
[2025-06-06 07:00:00] Set ATHENA_CORE_NUMBER=4
[2025-06-06 07:00:00] Starting ATLAS job with PandaID=6669088837
[2025-06-06 07:00:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 07:03:41] Job failed
[2025-06-06 07:03:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-06 07:03:41] ++ pwd
[2025-06-06 07:03:41] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot72/slots/0/
[2025-06-06 07:03:41] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot72/slots/0/
[2025-06-06 07:03:41] + mv ATLAS.root_0 EVNT.44871834._002162.pool.root.1
[2025-06-06 07:03:41] mv: 'ATLAS.root_0' and 'EVNT.44871834._002162.pool.root.1' are the same file
[2025-06-06 07:03:41] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-06 07:03:41] + umask 077
[2025-06-06 07:03:41] ++ date +%s
[2025-06-06 07:03:41] + ACCOUNTING_STARTTIME=1749186000
[2025-06-06 07:03:41] + echo 'Detecting resource accounting method available for the job.'
[2025-06-06 07:03:41] Detecting resource accounting method available for the job.
[2025-06-06 07:03:41] + JOB_ACCOUNTING=
[2025-06-06 07:03:41] + command -v arc-job-cgroup
[2025-06-06 07:03:41] + '[' -z '' ']'
[2025-06-06 07:03:41] + GNU_TIME=/usr/bin/time
[2025-06-06 07:03:41] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-06 07:03:41] Looking for /usr/bin/time tool for accounting measurements
[2025-06-06 07:03:41] + '[' '!' -z /usr/bin/time ']'
[2025-06-06 07:03:41] + /usr/bin/time --version
[2025-06-06 07:03:41] + echo 'GNU time found and will be used for job accounting.'
[2025-06-06 07:03:41] GNU time found and will be used for job accounting.
[2025-06-06 07:03:41] + JOB_ACCOUNTING=gnutime
[2025-06-06 07:03:41] + '[' -z gnutime ']'
[2025-06-06 07:03:41] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 07:03:41] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 07:03:41] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-29/BOINC_MCORE/6669088837.out
[2025-06-06 07:03:41] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-29/BOINC_MCORE/6669088837.out
[2025-06-06 07:03:41] + export PILOT_NOKILL=YES
[2025-06-06 07:03:41] + PILOT_NOKILL=YES
[2025-06-06 07:03:41] + export GRID_GLOBAL_JOBID=H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-06 07:03:41] + GRID_GLOBAL_JOBID=H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-06 07:03:41] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-06 07:03:41] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m
[2025-06-06 07:03:41] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 07:03:41] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 07:03:41] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-06 07:03:41] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-06 07:03:41] ++ pwd
[2025-06-06 07:03:41] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot72/slots/0
[2025-06-06 07:03:41] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-06 07:03:41] ++ pwd
[2025-06-06 07:03:41] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot72/slots/0/log.44871837._092765.job.log.1
[2025-06-06 07:03:41] ++ pwd
[2025-06-06 07:03:41] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot72/slots/0/log.44871837._092765.job.log.1
[2025-06-06 07:03:41] ++ pwd
[2025-06-06 07:03:41] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot72/slots/0.diag
[2025-06-06 07:03:41] + '[' '!' -z '' ']'
[2025-06-06 07:03:41] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-06 07:03:41] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-06 07:03:41] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-06 07:03:41] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-06 07:03:41] + '[' '!' -z '' ']'
[2025-06-06 07:03:41] + '[' -z yes ']'
[2025-06-06 07:03:41] ++ pwd
[2025-06-06 07:03:41] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag
[2025-06-06 07:03:41] + runtimeenvironments=
[2025-06-06 07:03:41] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 07:03:41] + RTE_function_0 1
[2025-06-06 07:03:41] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 07:03:41] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 07:03:41] + export BOINC_APP=ATLAS
[2025-06-06 07:03:41] + BOINC_APP=ATLAS
[2025-06-06 07:03:41] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 07:03:41] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 07:03:41] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 07:03:41] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 07:03:41] + '[' -z 1 ']'
[2025-06-06 07:03:41] + '[' 1 == 1 ']'
[2025-06-06 07:03:41] + shift
[2025-06-06 07:03:41] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot72/slots/0/
[2025-06-06 07:03:41] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot72/slots/0/
[2025-06-06 07:03:41] + '[' 0 -ne 0 ']'
[2025-06-06 07:03:41] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-06 07:03:41] + '[' -f /etc/os-release ']'
[2025-06-06 07:03:41] +++ cat /etc/os-release
[2025-06-06 07:03:41] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-06 07:03:41] +++ NAME='CentOS Linux'
[2025-06-06 07:03:41] +++ VERSION='7 (Core)'
[2025-06-06 07:03:41] +++ ID=centos
[2025-06-06 07:03:41] +++ ID_LIKE='rhel fedora'
[2025-06-06 07:03:41] +++ VERSION_ID=7
[2025-06-06 07:03:41] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-06 07:03:41] +++ ANSI_COLOR='0;31'
[2025-06-06 07:03:41] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-06 07:03:41] +++ HOME_URL=https://www.centos.org/
[2025-06-06 07:03:41] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-06 07:03:41] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-06 07:03:41] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-06 07:03:41] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-06 07:03:41] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-06 07:03:41] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-06 07:03:41] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-06 07:03:41] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-06 07:03:41] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-06 07:03:41] + HOME=/scratch/boinc/var/slot72/slots/0
[2025-06-06 07:03:41] + export HOME
[2025-06-06 07:03:41] + cd /scratch/boinc/var/slot72/slots/0
[2025-06-06 07:03:41] + '[' '!' -z '' ']'
[2025-06-06 07:03:41] + '[' -z '' ']'
[2025-06-06 07:03:41] ++ /bin/hostname -f
[2025-06-06 07:03:41] + nodename=skurut14.grid.cesnet.cz
[2025-06-06 07:03:41] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-06 07:03:41] + echo Processors=2
[2025-06-06 07:03:41] + echo Nodecount=1
[2025-06-06 07:03:41] + echo Benchmark=HEPSPEC:1.0
[2025-06-06 07:03:41] + executable=./runpilot2-wrapper.sh
[2025-06-06 07:03:41] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-06 07:03:41] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-06 07:03:41] ++ head -n 1
[2025-06-06 07:03:41] ++ tr -d '\0'
[2025-06-06 07:03:41] + line1='#!/bin/bash'
[2025-06-06 07:03:41] ++ echo '#!/bin/bash'
[2025-06-06 07:03:41] ++ sed -n 's/^#! *//p'
[2025-06-06 07:03:41] + shebang=/bin/bash
[2025-06-06 07:03:41] ++ echo /bin/bash
[2025-06-06 07:03:41] ++ awk '{print $1}'
[2025-06-06 07:03:41] + interpreter=/bin/bash
[2025-06-06 07:03:41] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-06 07:03:41] + '[' x/bin/bash = x ']'
[2025-06-06 07:03:41] + type /bin/bash
[2025-06-06 07:03:41] + '[' xgnutime = xgnutime ']'
[2025-06-06 07:03:41] + /usr/bin/time -o /scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-06 07:03:41] + RESULT=2
[2025-06-06 07:03:41] + sed -i -e /nodename=/d /scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag
[2025-06-06 07:03:41] ++ grep domain_name init_data.xml
[2025-06-06 07:03:41] ++ awk -F '>' '{print $2}'
[2025-06-06 07:03:41] ++ awk -F '<' '{print $1}'
[2025-06-06 07:03:41] ++ sed -e 's# #_#g'
[2025-06-06 07:03:41] + hostname=skurut14.grid.cesnet.cz
[2025-06-06 07:03:41] ++ grep user_name init_data.xml
[2025-06-06 07:03:41] ++ awk -F '>' '{print $2}'
[2025-06-06 07:03:41] ++ awk -F '<' '{print $1}'
[2025-06-06 07:03:41] ++ sed -e 's# #_#g'
[2025-06-06 07:03:41] + username=praguelcg2
[2025-06-06 07:03:41] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-06 07:03:41] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-06 07:03:41] + '[' -n 4 ']'
[2025-06-06 07:03:41] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot72/slots/0/H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag
[2025-06-06 07:03:41] + echo exitcode=2
[2025-06-06 07:03:41] + runtimeenvironments=
[2025-06-06 07:03:41] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 07:03:41] + RTE_function_0 2
[2025-06-06 07:03:41] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 07:03:41] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 07:03:41] + export BOINC_APP=ATLAS
[2025-06-06 07:03:41] + BOINC_APP=ATLAS
[2025-06-06 07:03:41] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 07:03:41] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 07:03:41] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 07:03:41] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 07:03:41] + '[' -z 2 ']'
[2025-06-06 07:03:41] + '[' 2 == 1 ']'
[2025-06-06 07:03:41] + '[' 0 -ne 0 ']'
[2025-06-06 07:03:41] + echo 'zip all output files'
[2025-06-06 07:03:41] + flist='*.diag '
[2025-06-06 07:03:41] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-06 07:03:41] + '[' -e ./heartbeat.json ']'
[2025-06-06 07:03:41] + flist='*.diag  ./heartbeat.json'
[2025-06-06 07:03:41] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-06 07:03:41] + '[' -e ./output.list ']'
[2025-06-06 07:03:41] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-06 07:03:41] + '[' -e ./log.44871837._092765.job.log.1 ']'
[2025-06-06 07:03:41] + flist='*.diag  ./heartbeat.json ./log.44871837._092765.job.log.1'
[2025-06-06 07:03:41] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-06 07:03:41] + '[' -e ./log.44871837._092765.job.log.1 ']'
[2025-06-06 07:03:41] + flist='*.diag  ./heartbeat.json ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1'
[2025-06-06 07:03:41] + for f in ./heartbeat.json ./output.list ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1 ./gmlog/
[2025-06-06 07:03:41] + '[' -e ./gmlog/ ']'
[2025-06-06 07:03:41] + '[' -f output.list ']'
[2025-06-06 07:03:41] + tar cvf result.tar.gz H5oNDm0kge7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKNUKDmKKrh5m.diag ./heartbeat.json ./log.44871837._092765.job.log.1 ./log.44871837._092765.job.log.1
[2025-06-06 07:03:41] + '[' xgnutime = xcgroup ']'
[2025-06-06 07:03:41] + '[' -n '' ']'
[2025-06-06 07:03:41] + '[' -n '' ']'
[2025-06-06 07:03:41] ++ date +%s
[2025-06-06 07:03:41] + ACCOUNTING_ENDTIME=1749186187
[2025-06-06 07:03:41] ++ date -d '1970-01-01 UTC 1749186000 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 07:03:41] + echo LRMSStartTime=20250606070000Z
[2025-06-06 07:03:41] ++ date -d '1970-01-01 UTC 1749186187 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 07:03:41] + echo LRMSEndTime=20250606070307Z
[2025-06-06 07:03:41] + echo walltime=187
[2025-06-06 07:03:41] + echo exitcode=2
[2025-06-06 07:03:41] + exit 2
[2025-06-06 07:03:41] ./log.44871837._092765.job.log.1
[2025-06-06 07:03:41] ./pilotlog.txt
[2025-06-06 07:03:41] ./runtime_log.err
[2025-06-06 07:03:41] ./PanDA_Pilot-6669088837/prmon.log
[2025-06-06 07:03:41] ./PanDA_Pilot-6669088837/pilotlog.txt
[2025-06-06 07:03:41] ./PanDA_Pilot-6669088837/PoolFileCatalog.xml
[2025-06-06 07:03:41] ./PanDA_Pilot-6669088837/log.EVNTtoHITS
[2025-06-06 07:03:41] ./runtime_log
[2025-06-06 07:03:41] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-06 07:03:41] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-06 07:03:41] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-06 07:03:41] ./pilot3/pilot/util/loggingsupport.py
[2025-06-06 07:03:41] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-06 07:03:41] ./pilot3/pilot/util/realtimelogger.py
07:16:26 (2636360): run_atlas exited; CPU time 14.595200
07:16:26 (2636360): app exit status: 0x1
07:16:26 (2636360): called boinc_finish(195)

</stderr_txt>
]]>

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