Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:49:38 (29872): wrapper (7.7.26015): starting
19:49:38 (29872): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 19:49:38] Arguments: --nthreads 8
[2025-05-29 19:49:38] Threads: 8
[2025-05-29 19:49:38] Checking for CVMFS
[2025-05-29 19:49:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 19:49:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 19:49:39] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 19:49:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 19:49:40] 2.11.2.0 702 25071 81796 146570 3 59 19108188 25165824 4639 130560 0 15085390 99.821 15046963 1962 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 19:49:40] CVMFS is ok
[2025-05-29 19:49:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 19:49:40] Checking for apptainer binary...
[2025-05-29 19:49:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 19:49:40] Running /usr/bin/apptainer --version
[2025-05-29 19:49:40] apptainer version 1.3.2-1.el7
[2025-05-29 19:49:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 19:49:52] cg-vwn487.simple-grid.lan
[2025-05-29 19:49:52] apptainer works
[2025-05-29 19:49:52] Set ATHENA_PROC_NUMBER=8
[2025-05-29 19:49:52] Set ATHENA_CORE_NUMBER=8
[2025-05-29 19:49:52] Starting ATLAS job with PandaID=6669088851
[2025-05-29 19:49:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 00:56:26]  *** The last 200 lines of the pilot log: ***
[2025-05-30 00:56:26] 2025-05-29 22:47:19,015 | INFO     | extracted standard info from prmon json
[2025-05-30 00:56:26] 2025-05-29 22:47:19,015 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 00:56:26] 2025-05-29 22:47:19,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 00:56:26] 2025-05-29 22:47:19,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 00:56:26] 2025-05-29 22:47:19,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 00:56:26] 2025-05-29 22:47:19,021 | INFO     | fitting pss+swap vs Time
[2025-05-30 00:56:26] 2025-05-29 22:47:19,022 | INFO     | sum of square deviations: 6806862510.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,024 | INFO     | sum of deviations: 126858489631.00003
[2025-05-30 00:56:26] 2025-05-29 22:47:19,024 | INFO     | mean x: 1748550212.5
[2025-05-30 00:56:26] 2025-05-29 22:47:19,024 | INFO     | mean y: 2435560.2285714285
[2025-05-30 00:56:26] 2025-05-29 22:47:19,025 | INFO     | -- intersect: -32585036079.728817
[2025-05-30 00:56:26] 2025-05-29 22:47:19,025 | INFO     | intersect: -32585036079.728817
[2025-05-30 00:56:26] 2025-05-29 22:47:19,025 | INFO     | chi2: 6.436126342891792
[2025-05-30 00:56:26] 2025-05-29 22:47:19,026 | INFO     | sum of square deviations: 6448679050.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,028 | INFO     | sum of deviations: 142726576523.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,028 | INFO     | mean x: 1748550060.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,028 | INFO     | mean y: 2442201.2945454544
[2025-05-30 00:56:26] 2025-05-29 22:47:19,028 | INFO     | -- intersect: -38697663976.711975
[2025-05-30 00:56:26] 2025-05-29 22:47:19,028 | INFO     | intersect: -38697663976.711975
[2025-05-30 00:56:26] 2025-05-29 22:47:19,029 | INFO     | chi2: 5.702932249457637
[2025-05-30 00:56:26] 2025-05-29 22:47:19,029 | INFO     | current chi2=5.702932249457637 (change=11.391853645693443 %)
[2025-05-30 00:56:26] 2025-05-29 22:47:19,029 | INFO     | right removable region: 274
[2025-05-30 00:56:26] 2025-05-29 22:47:19,029 | INFO     | sum of square deviations: 6448679050.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,031 | INFO     | sum of deviations: 29766327563.000004
[2025-05-30 00:56:26] 2025-05-29 22:47:19,032 | INFO     | mean x: 1748550365.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,032 | INFO     | mean y: 2476870.7745454544
[2025-05-30 00:56:26] 2025-05-29 22:47:19,032 | INFO     | -- intersect: -8068621492.384528
[2025-05-30 00:56:26] 2025-05-29 22:47:19,032 | INFO     | intersect: -8068621492.384528
[2025-05-30 00:56:26] 2025-05-29 22:47:19,032 | INFO     | chi2: 1.7295193818928885
[2025-05-30 00:56:26] 2025-05-29 22:47:19,032 | INFO     | current chi2=1.7295193818928885 (change=73.12794544807204 %)
[2025-05-30 00:56:26] 2025-05-29 22:47:19,033 | INFO     | sum of square deviations: 6103286527.5
[2025-05-30 00:56:26] 2025-05-29 22:47:19,035 | INFO     | sum of deviations: -8349524816.000002
[2025-05-30 00:56:26] 2025-05-29 22:47:19,036 | INFO     | mean x: 1748550517.5
[2025-05-30 00:56:26] 2025-05-29 22:47:19,036 | INFO     | mean y: 2493600.8666666667
[2025-05-30 00:56:26] 2025-05-29 22:47:19,036 | INFO     | -- intersect: 2394576271.754494
[2025-05-30 00:56:26] 2025-05-29 22:47:19,036 | INFO     | intersect: 2394576271.754494
[2025-05-30 00:56:26] 2025-05-29 22:47:19,036 | INFO     | chi2: 0.8285652420927163
[2025-05-30 00:56:26] 2025-05-29 22:47:19,037 | INFO     | current chi2=0.8285652420927163 (change=52.092746067645365 %)
[2025-05-30 00:56:26] 2025-05-29 22:47:19,037 | INFO     | sum of square deviations: 5770452380.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,039 | INFO     | sum of deviations: -3296432741.0000057
[2025-05-30 00:56:26] 2025-05-29 22:47:19,039 | INFO     | mean x: 1748550670.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,040 | INFO     | mean y: 2491264.966037736
[2025-05-30 00:56:26] 2025-05-29 22:47:19,040 | INFO     | -- intersect: 1001369567.4476702
[2025-05-30 00:56:26] 2025-05-29 22:47:19,040 | INFO     | intersect: 1001369567.4476702
[2025-05-30 00:56:26] 2025-05-29 22:47:19,040 | INFO     | chi2: 0.8043644086498851
[2025-05-30 00:56:26] 2025-05-29 22:47:19,040 | INFO     | current chi2=0.8043644086498851 (change=2.9208120511677373 %)
[2025-05-30 00:56:26] 2025-05-29 22:47:19,040 | INFO     | left removable region: 30
[2025-05-30 00:56:26] 2025-05-29 22:47:19,041 | INFO     | sum of square deviations: 4504437945.0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,043 | INFO     | sum of deviations: 10942645094.500006
[2025-05-30 00:56:26] 2025-05-29 22:47:19,043 | INFO     | mean x: 1748550944.5
[2025-05-30 00:56:26] 2025-05-29 22:47:19,043 | INFO     | mean y: 2500849.7909836066
[2025-05-30 00:56:26] 2025-05-29 22:47:19,043 | INFO     | -- intersect: -4245259392.206595
[2025-05-30 00:56:26] 2025-05-29 22:47:19,043 | INFO     | intersect: -4245259392.206595
[2025-05-30 00:56:26] 2025-05-29 22:47:19,044 | INFO     | chi2: 0.0007290288042960691
[2025-05-30 00:56:26] 2025-05-29 22:47:19,044 | INFO     | -- intersect: -4245259392.206595
[2025-05-30 00:56:26] 2025-05-29 22:47:19,044 | INFO     | current memory leak: 2.43 B/s (using 244 data points, chi2=0.00)
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | ..............................
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . Timing measurements:
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . get job = 0 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . initial setup = 9 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . payload setup = 178 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . stage-in = 0 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . payload execution = 17194 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,045 | INFO     | . stage-out = 2 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,046 | INFO     | . log creation = 0 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,046 | INFO     | ..............................
[2025-05-30 00:56:26] 2025-05-29 22:47:19,640 | INFO     | 
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | job summary report
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | --------------------------------------------------
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | PanDA job id: 6669088851
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | task id: 44871837
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | errors: (none)
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | pilot state: finished 
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | transexitcode: 0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | exeerrorcode: 0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,641 | INFO     | exeerrordiag: 
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | exitcode: 0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | exitmsg: OK
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | cpuconsumptiontime: 64782 s
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | nevents: 400
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | neventsw: 0
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | pid: 12639
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | pgrp: 12639
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | corecount: 8
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | event service: False
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | sizes: {0: 2405007, 1: 2405262, 12: 2405262, 23: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 66: 2405558, 76: 2405586, 87: 2405642, 95: 2405876, 98: 2406184, 1
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | --------------------------------------------------
[2025-05-30 00:56:26] 2025-05-29 22:47:19,642 | INFO     | 
[2025-05-30 00:56:26] 2025-05-29 22:47:19,643 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-05-30 00:56:26] 2025-05-29 22:47:20,014 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 00:56:26] 2025-05-29 22:47:20,016 | INFO     | job 6669088851 has completed (purged errors)
[2025-05-30 00:56:26] 2025-05-29 22:47:20,017 | INFO     | overall cleanup function is called
[2025-05-30 00:56:26] 2025-05-29 22:47:21,025 | INFO     | --- collectZombieJob: --- 10, [12639]
[2025-05-30 00:56:26] 2025-05-29 22:47:21,026 | INFO     | zombie collector waiting for pid 12639
[2025-05-30 00:56:26] 2025-05-29 22:47:21,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 00:56:26] 2025-05-29 22:47:21,026 | INFO     | collected zombie processes
[2025-05-30 00:56:26] 2025-05-29 22:47:21,026 | INFO     | will attempt to kill all subprocesses of pid=12639
[2025-05-30 00:56:26] 2025-05-29 22:47:21,136 | INFO     | process IDs to be killed: [12639] (in reverse order)
[2025-05-30 00:56:26] 2025-05-29 22:47:21,353 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 00:56:26] 2025-05-29 22:47:21,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 00:56:26] 2025-05-29 22:47:21,356 | INFO     | did not find any defunct processes belonging to 12639
[2025-05-30 00:56:26] 2025-05-29 22:47:21,359 | INFO     | did not find any defunct processes belonging to 12639
[2025-05-30 00:56:26] 2025-05-29 22:47:21,360 | INFO     | ready for new job
[2025-05-30 00:56:26] 2025-05-29 22:47:21,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 00:56:26] 2025-05-29 22:47:21,362 | INFO     | **************************************
[2025-05-30 00:56:26] 2025-05-29 22:47:21,362 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 00:56:26] 2025-05-29 22:47:21,362 | INFO     | **************************************
[2025-05-30 00:56:26] 2025-05-29 22:47:21,362 | INFO     | 
[2025-05-30 00:56:26] 2025-05-29 22:47:21,363 | INFO     | pilot is running in a VM
[2025-05-30 00:56:26] 2025-05-29 22:47:21,363 | INFO     | architecture information:
[2025-05-30 00:56:26] 2025-05-29 22:47:21,364 | INFO     | executing command: cat /etc/os-release
[2025-05-30 00:56:26] 2025-05-29 22:47:21,387 | INFO     | cat /etc/os-release:
[2025-05-30 00:56:26] NAME="CentOS Linux"
[2025-05-30 00:56:26] VERSION="7 (Core)"
[2025-05-30 00:56:26] ID="centos"
[2025-05-30 00:56:26] ID_LIKE="rhel fedora"
[2025-05-30 00:56:26] VERSION_ID="7"
[2025-05-30 00:56:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 00:56:26] ANSI_COLOR="0;31"
[2025-05-30 00:56:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 00:56:26] HOME_URL="https://www.centos.org/"
[2025-05-30 00:56:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 00:56:26] 
[2025-05-30 00:56:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 00:56:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 00:56:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 00:56:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 00:56:26] 
[2025-05-30 00:56:26] 2025-05-29 22:47:21,387 | INFO     | **************************************
[2025-05-30 00:56:26] 2025-05-29 22:47:21,891 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-05-30 00:56:26] 2025-05-29 22:47:22,120 | INFO     | sufficient remaining disk space (496070819840 B)
[2025-05-30 00:56:26] 2025-05-29 22:47:22,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 00:56:26] 2025-05-29 22:47:22,121 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 00:56:26] 2025-05-29 22:47:22,121 | INFO     | update_server=False
[2025-05-30 00:56:26] 2025-05-29 22:47:22,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 00:56:26] 2025-05-29 22:47:22,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 00:56:26] 2025-05-29 22:47:22,123 | INFO     | aborting loop
[2025-05-30 00:56:26] 2025-05-29 22:47:22,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 00:56:26] 2025-05-29 22:47:22,128 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 00:56:26] 2025-05-29 22:47:22,129 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 00:56:26] 2025-05-29 22:47:22,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 00:56:26] 2025-05-29 22:47:22,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 00:56:26] 2025-05-29 22:47:22,361 | INFO     | all payload control threads have been joined
[2025-05-30 00:56:26] 2025-05-29 22:47:22,418 | INFO     | all data control threads have been joined
[2025-05-30 00:56:26] 2025-05-29 22:47:22,539 | INFO     | all job control threads have been joined
[2025-05-30 00:56:26] 2025-05-29 22:47:22,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 00:56:26] 2025-05-29 22:47:23,128 | INFO     | [job] retrieve thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,129 | INFO     | [job] job monitor thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,152 | INFO     | [job] validate thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,368 | INFO     | [payload] control thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,425 | INFO     | [data] control thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,489 | INFO     | [payload] failed_post thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,546 | INFO     | [job] control thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,889 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,903 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:23,980 | INFO     | [payload] validate_post thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:24,132 | INFO     | [data] copytool_out thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:24,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 00:56:26] 2025-05-29 22:47:24,209 | INFO     | [data] copytool_in thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:24,246 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:25,211 | INFO     | [job] queue monitor thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:26,784 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 00:56:26] 2025-05-29 22:47:27,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513274025792)>', '<ExcThread(monitor, started 140512984024832)>']
[2025-05-30 00:56:26] 2025-05-29 22:47:27,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 00:56:26] 2025-05-29 22:47:27,159 | INFO     | [monitor] control thread has ended
[2025-05-30 00:56:26] 2025-05-29 22:47:32,064 | INFO     | all workflow threads have been joined
[2025-05-30 00:56:26] 2025-05-29 22:47:32,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 00:56:26] 2025-05-29 22:47:32,065 | INFO     | traces error code: 0
[2025-05-30 00:56:26] 2025-05-29 22:47:32,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 00:56:26] 2025-05-29 22:47:32,343 [wrapper] ==== pilot stdout END ====
[2025-05-30 00:56:26] 2025-05-29 22:47:32,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 00:56:26] 2025-05-29 22:47:32,401 [wrapper] pilotpid: 4039
[2025-05-30 00:56:26] 2025-05-29 22:47:32,487 [wrapper] Pilot exit status: 0
[2025-05-30 00:56:26] 2025-05-29 22:47:32,753 [wrapper] pandaids: 6669088851
[2025-05-30 00:56:26] 2025-05-29 22:47:33,680 [wrapper] cleanup supervisor_pilot 26601 4040
[2025-05-30 00:56:26] 2025-05-29 22:47:33,687 [wrapper] Test setup, not cleaning
[2025-05-30 00:56:26] 2025-05-29 22:47:33,692 [wrapper] apfmon messages muted
[2025-05-30 00:56:26] 2025-05-29 22:47:33,708 [wrapper] ==== wrapper stdout END ====
[2025-05-30 00:56:26] 2025-05-29 22:47:33,774 [wrapper] ==== wrapper stderr END ====
[2025-05-30 00:56:26]  *** Error codes and diagnostics ***
[2025-05-30 00:56:26]     "exeErrorCode": 0,
[2025-05-30 00:56:26]     "exeErrorDiag": "",
[2025-05-30 00:56:26]     "pilotErrorCode": 0,
[2025-05-30 00:56:26]     "pilotErrorDiag": "",
[2025-05-30 00:56:26]  *** Listing of results directory ***
[2025-05-30 00:56:26] total 422772
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc    495897 May 29 02:49 pilot3.tar.gz
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc      5111 May 29 02:59 queuedata.json
[2025-05-30 00:56:26] -rwx------. 1 boinc boinc     37140 May 29 03:00 runpilot2-wrapper.sh
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc       100 May 29 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 00:56:26] -rwxr-xr-x. 1 boinc boinc      7986 May 29 19:49 run_atlas
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc       105 May 29 19:49 job.xml
[2025-05-30 00:56:26] -rw-r--r--. 2 boinc boinc 223753147 May 29 19:49 EVNT.44871834._003607.pool.root.1
[2025-05-30 00:56:26] -rw-r--r--. 2 boinc boinc     15093 May 29 19:49 start_atlas.sh
[2025-05-30 00:56:26] drwxrwx--x. 2 boinc boinc        68 May 29 19:49 shared
[2025-05-30 00:56:26] -rw-r--r--. 2 boinc boinc    508878 May 29 19:49 input.tar.gz
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc      6371 May 29 19:49 init_data.xml
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc         0 May 29 19:49 boinc_lockfile
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc      2559 May 29 19:49 pandaJob.out
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc    992706 May 29 19:52 agis_schedconf.cvmfs.json
[2025-05-30 00:56:26] drwx------. 4 boinc boinc      4096 May 29 19:53 pilot3
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc 201487854 May 30 00:44 HITS.44871837._092779.pool.root.1
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc       531 May 30 00:44 boinc_task_state.xml
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc      1015 May 30 00:45 memory_monitor_summary.json
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc   1603667 May 30 00:45 agis_ddmendpoints.agis.ALL.json
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc    415247 May 30 00:45 log.44871837._092779.job.log.tgz.1
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc        95 May 30 00:46 pilot_heartbeat.json
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc      7688 May 30 00:47 heartbeat.json
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc      4539 May 30 00:47 pilotlog.txt
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc   1505919 May 30 00:47 log.44871837._092779.job.log.1
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc       357 May 30 00:47 output.list
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc       620 May 30 00:47 runtime_log
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc   1945600 May 30 00:47 result.tar.gz
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc       657 May 30 00:47 udVLDmOoge7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2SdKDmSa8WFn.diag
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc      8659 May 30 00:47 runtime_log.err
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc      8192 May 30 00:56 boinc_mmap_file
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc        28 May 30 00:56 wrapper_checkpoint.txt
[2025-05-30 00:56:26] -rw-r--r--. 1 boinc boinc     20524 May 30 00:56 stderr.txt
[2025-05-30 00:56:26] HITS file was successfully produced:
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc 201487854 May 30 00:44 shared/HITS.pool.root.1
[2025-05-30 00:56:26]  *** Contents of shared directory: ***
[2025-05-30 00:56:26] total 417696
[2025-05-30 00:56:26] -rw-r--r--. 2 boinc boinc 223753147 May 29 19:49 ATLAS.root_0
[2025-05-30 00:56:26] -rw-r--r--. 2 boinc boinc     15093 May 29 19:49 start_atlas.sh
[2025-05-30 00:56:26] -rw-r--r--. 2 boinc boinc    508878 May 29 19:49 input.tar.gz
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc 201487854 May 30 00:44 HITS.pool.root.1
[2025-05-30 00:56:26] -rw-------. 1 boinc boinc   1945600 May 30 00:47 result.tar.gz
00:56:28 (29872): run_atlas exited; CPU time 65011.941073
00:56:28 (29872): called boinc_finish(0)

</stderr_txt>
]]>

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