Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:03 (1278617): wrapper (7.7.26015): starting
16:41:03 (1278617): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 16:41:03] Arguments: --nthreads 4
[2025-06-03 16:41:03] Threads: 4
[2025-06-03 16:41:03] Checking for CVMFS
[2025-06-03 16:41:03] No cvmfs_config command found, will try listing directly
[2025-06-03 16:41:03] CVMFS is ok
[2025-06-03 16:41:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 16:41:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 16:41:03] Further information can be found at the LHC@home message board.
[2025-06-03 16:41:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 16:41:03] Checking for apptainer binary...
[2025-06-03 16:41:03] which: no apptainer in ((null))
[2025-06-03 16:41:03] apptainer is not installed, using version from CVMFS
[2025-06-03 16:41:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 16:41:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-06-03 16:41:03] apptainer works
[2025-06-03 16:41:03] Set ATHENA_PROC_NUMBER=4
[2025-06-03 16:41:03] Set ATHENA_CORE_NUMBER=4
[2025-06-03 16:41:03] Starting ATLAS job with PandaID=6668993124
[2025-06-03 16:41:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 20:45:33]  *** The last 200 lines of the pilot log: ***
[2025-06-03 20:45:33] 2025-06-03 18:43:31,302 | INFO     | executing command: lscpu
[2025-06-03 20:45:33] 2025-06-03 18:43:31,365 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 20:45:33] 2025-06-03 18:43:33,488 | INFO     | monitor loop #1050: job 0:6668993124 is in state 'finished'
[2025-06-03 20:45:33] 2025-06-03 18:43:33,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,727 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 20:45:33] 2025-06-03 18:43:35,727 | INFO     | using path: /scratch/boinc/var/slot44/slots/0/PanDA_Pilot-6668993124/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,728 | INFO     | extracted standard info from prmon json
[2025-06-03 20:45:33] 2025-06-03 18:43:35,728 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 20:45:33] 2025-06-03 18:43:35,728 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 20:45:33] 2025-06-03 18:43:35,728 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 20:45:33] 2025-06-03 18:43:35,728 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 20:45:33] 2025-06-03 18:43:35,733 | INFO     | fitting pss+swap vs Time
[2025-06-03 20:45:33] 2025-06-03 18:43:35,734 | INFO     | sum of square deviations: 4180243959.5
[2025-06-03 20:45:33] 2025-06-03 18:43:35,735 | INFO     | sum of deviations: 31868558668.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,735 | INFO     | mean x: 1748968931.5
[2025-06-03 20:45:33] 2025-06-03 18:43:35,735 | INFO     | mean y: 2317100.319327731
[2025-06-03 20:45:33] 2025-06-03 18:43:35,736 | INFO     | -- intersect: -13331143707.715366
[2025-06-03 20:45:33] 2025-06-03 18:43:35,736 | INFO     | intersect: -13331143707.715366
[2025-06-03 20:45:33] 2025-06-03 18:43:35,736 | INFO     | chi2: 1.705843874207933
[2025-06-03 20:45:33] 2025-06-03 18:43:35,736 | INFO     | sum of square deviations: 3922276332.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,738 | INFO     | sum of deviations: 31075919543.999996
[2025-06-03 20:45:33] 2025-06-03 18:43:35,738 | INFO     | mean x: 1748968779.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,738 | INFO     | mean y: 2316631.630901288
[2025-06-03 20:45:33] 2025-06-03 18:43:35,738 | INFO     | -- intersect: -13854640007.99933
[2025-06-03 20:45:33] 2025-06-03 18:43:35,738 | INFO     | intersect: -13854640007.99933
[2025-06-03 20:45:33] 2025-06-03 18:43:35,739 | INFO     | chi2: 1.7067834574633853
[2025-06-03 20:45:33] 2025-06-03 18:43:35,739 | INFO     | current chi2=1.7067834574633853 (change=-0.05508026084090935 %)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,739 | INFO     | right removable region: 232
[2025-06-03 20:45:33] 2025-06-03 18:43:35,739 | INFO     | sum of square deviations: 3922276332.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,741 | INFO     | sum of deviations: -7793876242.999997
[2025-06-03 20:45:33] 2025-06-03 18:43:35,741 | INFO     | mean x: 1748969084.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,741 | INFO     | mean y: 2340364.618025751
[2025-06-03 20:45:33] 2025-06-03 18:43:35,741 | INFO     | -- intersect: 3477681579.697174
[2025-06-03 20:45:33] 2025-06-03 18:43:35,741 | INFO     | intersect: 3477681579.697174
[2025-06-03 20:45:33] 2025-06-03 18:43:35,741 | INFO     | chi2: 0.031608145517942964
[2025-06-03 20:45:33] 2025-06-03 18:43:35,742 | INFO     | current chi2=0.031608145517942964 (change=98.14706691533425 %)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,742 | INFO     | sum of square deviations: 3675146117.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,743 | INFO     | sum of deviations: -9307421022.500004
[2025-06-03 20:45:33] 2025-06-03 18:43:35,744 | INFO     | mean x: 1748969236.5
[2025-06-03 20:45:33] 2025-06-03 18:43:35,744 | INFO     | mean y: 2341288.504385965
[2025-06-03 20:45:33] 2025-06-03 18:43:35,744 | INFO     | -- intersect: 4431659884.629711
[2025-06-03 20:45:33] 2025-06-03 18:43:35,744 | INFO     | intersect: 4431659884.629711
[2025-06-03 20:45:33] 2025-06-03 18:43:35,744 | INFO     | chi2: 0.02602772514954588
[2025-06-03 20:45:33] 2025-06-03 18:43:35,744 | INFO     | current chi2=0.02602772514954588 (change=17.65500720448547 %)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,745 | INFO     | left removable region: 20
[2025-06-03 20:45:33] 2025-06-03 18:43:35,745 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,746 | INFO     | sum of deviations: -5579924309.000001
[2025-06-03 20:45:33] 2025-06-03 18:43:35,746 | INFO     | mean x: 1748969358.5
[2025-06-03 20:45:33] 2025-06-03 18:43:35,746 | INFO     | mean y: 2338799.2264150945
[2025-06-03 20:45:33] 2025-06-03 18:43:35,747 | INFO     | -- intersect: 3305533438.1032662
[2025-06-03 20:45:33] 2025-06-03 18:43:35,747 | INFO     | intersect: 3305533438.1032662
[2025-06-03 20:45:33] 2025-06-03 18:43:35,747 | INFO     | chi2: 0.022694738540700084
[2025-06-03 20:45:33] 2025-06-03 18:43:35,747 | INFO     | -- intersect: 3305533438.1032662
[2025-06-03 20:45:33] 2025-06-03 18:43:35,747 | INFO     | current memory leak: -1.89 B/s (using 212 data points, chi2=0.02)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | ..............................
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | . Timing measurements:
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | . get job = 0 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | . initial setup = 1 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | . payload setup = 7 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | . stage-in = 0 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,748 | INFO     | . payload execution = 14504 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,749 | INFO     | . stage-out = 1 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,749 | INFO     | . log creation = 0 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,749 | INFO     | ..............................
[2025-06-03 20:45:33] 2025-06-03 18:43:35,956 | INFO     | 
[2025-06-03 20:45:33] 2025-06-03 18:43:35,956 | INFO     | job summary report
[2025-06-03 20:45:33] 2025-06-03 18:43:35,956 | INFO     | --------------------------------------------------
[2025-06-03 20:45:33] 2025-06-03 18:43:35,956 | INFO     | PanDA job id: 6668993124
[2025-06-03 20:45:33] 2025-06-03 18:43:35,956 | INFO     | task id: 44871837
[2025-06-03 20:45:33] 2025-06-03 18:43:35,956 | INFO     | errors: (none)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | pilot state: finished 
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | transexitcode: 0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | exeerrorcode: 0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | exeerrordiag: 
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | exitcode: 0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | exitmsg: OK
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | cpuconsumptiontime: 55606 s
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | nevents: 400
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | neventsw: 0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | pid: 1289481
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | pgrp: 1289481
[2025-06-03 20:45:33] 2025-06-03 18:43:35,957 | INFO     | corecount: 4
[2025-06-03 20:45:33] 2025-06-03 18:43:35,958 | INFO     | event service: False
[2025-06-03 20:45:33] 2025-06-03 18:43:35,958 | INFO     | sizes: {0: 2405074, 1: 2405273, 6: 2405479, 12: 2405507, 14515: 2436093, 14516: 2436092, 14517: 2445239, 14521: 2445295, 14526: 2445465}
[2025-06-03 20:45:33] 2025-06-03 18:43:35,958 | INFO     | --------------------------------------------------
[2025-06-03 20:45:33] 2025-06-03 18:43:35,958 | INFO     | 
[2025-06-03 20:45:33] 2025-06-03 18:43:35,958 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/0
[2025-06-03 20:45:33] 2025-06-03 18:43:35,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | job 6668993124 has completed (purged errors)
[2025-06-03 20:45:33] 2025-06-03 18:43:35,981 | INFO     | overall cleanup function is called
[2025-06-03 20:45:33] 2025-06-03 18:43:36,986 | INFO     | --- collectZombieJob: --- 10, [1289481]
[2025-06-03 20:45:33] 2025-06-03 18:43:36,986 | INFO     | zombie collector waiting for pid 1289481
[2025-06-03 20:45:33] 2025-06-03 18:43:36,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 20:45:33] 2025-06-03 18:43:36,986 | INFO     | collected zombie processes
[2025-06-03 20:45:33] 2025-06-03 18:43:36,986 | INFO     | will attempt to kill all subprocesses of pid=1289481
[2025-06-03 20:45:33] 2025-06-03 18:43:37,332 | INFO     | process IDs to be killed: [1289481] (in reverse order)
[2025-06-03 20:45:33] 2025-06-03 18:43:37,443 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 20:45:33] 2025-06-03 18:43:37,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 20:45:33] 2025-06-03 18:43:37,455 | INFO     | did not find any defunct processes belonging to 1289481
[2025-06-03 20:45:33] 2025-06-03 18:43:37,468 | INFO     | did not find any defunct processes belonging to 1289481
[2025-06-03 20:45:33] 2025-06-03 18:43:37,468 | INFO     | ready for new job
[2025-06-03 20:45:33] 2025-06-03 18:43:37,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 20:45:33] 2025-06-03 18:43:37,470 | INFO     | **************************************
[2025-06-03 20:45:33] 2025-06-03 18:43:37,470 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 20:45:33] 2025-06-03 18:43:37,470 | INFO     | **************************************
[2025-06-03 20:45:33] 2025-06-03 18:43:37,471 | INFO     | 
[2025-06-03 20:45:33] 2025-06-03 18:43:37,474 | INFO     | architecture information:
[2025-06-03 20:45:33] 2025-06-03 18:43:37,475 | INFO     | executing command: cat /etc/os-release
[2025-06-03 20:45:33] 2025-06-03 18:43:37,490 | INFO     | cat /etc/os-release:
[2025-06-03 20:45:33] NAME="CentOS Linux"
[2025-06-03 20:45:33] VERSION="7 (Core)"
[2025-06-03 20:45:33] ID="centos"
[2025-06-03 20:45:33] ID_LIKE="rhel fedora"
[2025-06-03 20:45:33] VERSION_ID="7"
[2025-06-03 20:45:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 20:45:33] ANSI_COLOR="0;31"
[2025-06-03 20:45:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 20:45:33] HOME_URL="https://www.centos.org/"
[2025-06-03 20:45:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 20:45:33] 
[2025-06-03 20:45:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 20:45:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 20:45:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 20:45:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 20:45:33] 
[2025-06-03 20:45:33] 2025-06-03 18:43:37,491 | INFO     | **************************************
[2025-06-03 20:45:33] 2025-06-03 18:43:37,994 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/0
[2025-06-03 20:45:33] 2025-06-03 18:43:38,010 | INFO     | sufficient remaining disk space (647756775424 B)
[2025-06-03 20:45:33] 2025-06-03 18:43:38,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 20:45:33] 2025-06-03 18:43:38,010 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 20:45:33] 2025-06-03 18:43:38,010 | INFO     | update_server=False
[2025-06-03 20:45:33] 2025-06-03 18:43:38,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 20:45:33] 2025-06-03 18:43:38,011 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 20:45:33] 2025-06-03 18:43:38,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 20:45:33] 2025-06-03 18:43:38,012 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 20:45:33] 2025-06-03 18:43:38,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 20:45:33] 2025-06-03 18:43:38,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 20:45:33] 2025-06-03 18:43:38,019 | INFO     | all payload control threads have been joined
[2025-06-03 20:45:33] 2025-06-03 18:43:38,308 | INFO     | all data control threads have been joined
[2025-06-03 20:45:33] 2025-06-03 18:43:38,502 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 20:45:33] 2025-06-03 18:43:38,502 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 20:45:33] 2025-06-03 18:43:38,503 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:45:33] 2025-06-03 18:43:38,503 | INFO     | will abort loop
[2025-06-03 20:45:33] 2025-06-03 18:43:38,793 | INFO     | all job control threads have been joined
[2025-06-03 20:45:33] 2025-06-03 18:43:39,016 | INFO     | [job] retrieve thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,024 | INFO     | [payload] control thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,314 | INFO     | [data] control thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,428 | INFO     | [payload] failed_post thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,508 | INFO     | [job] job monitor thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,586 | INFO     | [payload] validate_post thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,606 | INFO     | [job] validate thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,684 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,793 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:39,799 | INFO     | [job] control thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:40,017 | INFO     | [data] copytool_out thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:40,038 | INFO     | [data] copytool_in thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:40,143 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:40,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:45:33] 2025-06-03 18:43:40,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 20:45:33] 2025-06-03 18:43:41,864 | INFO     | [job] queue monitor thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:44,911 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:48,710 | INFO     | job.realtimelogging is not enabled
[2025-06-03 20:45:33] 2025-06-03 18:43:49,715 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 20:45:33] 2025-06-03 18:43:50,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23405418669888)>', '<ExcThread(monitor, started 23405178877696)>']
[2025-06-03 20:45:33] 2025-06-03 18:43:51,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 20:45:33] 2025-06-03 18:43:51,076 | INFO     | [monitor] control thread has ended
[2025-06-03 20:45:33] 2025-06-03 18:43:55,409 | INFO     | all workflow threads have been joined
[2025-06-03 20:45:33] 2025-06-03 18:43:55,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 20:45:33] 2025-06-03 18:43:55,410 | INFO     | traces error code: 0
[2025-06-03 20:45:33] 2025-06-03 18:43:55,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 20:45:33] 2025-06-03 18:43:55,556 [wrapper] ==== pilot stdout END ====
[2025-06-03 20:45:33] 2025-06-03 18:43:55,559 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 20:45:33] 2025-06-03 18:43:55,562 [wrapper] pilotpid: 1282327
[2025-06-03 20:45:33] 2025-06-03 18:43:55,564 [wrapper] Pilot exit status: 0
[2025-06-03 20:45:33] 2025-06-03 18:43:55,575 [wrapper] pandaids: 6668993124
[2025-06-03 20:45:33] 2025-06-03 18:43:55,650 [wrapper] cleanup supervisor_pilot 1750634 1282328
[2025-06-03 20:45:33] 2025-06-03 18:43:55,654 [wrapper] Test setup, not cleaning
[2025-06-03 20:45:33] 2025-06-03 18:43:55,657 [wrapper] apfmon messages muted
[2025-06-03 20:45:33] 2025-06-03 18:43:55,660 [wrapper] ==== wrapper stdout END ====
[2025-06-03 20:45:33] 2025-06-03 18:43:55,663 [wrapper] ==== wrapper stderr END ====
[2025-06-03 20:45:33]  *** Error codes and diagnostics ***
[2025-06-03 20:45:33]     "exeErrorCode": 0,
[2025-06-03 20:45:33]     "exeErrorDiag": "",
[2025-06-03 20:45:33]     "pilotErrorCode": 0,
[2025-06-03 20:45:33]     "pilotErrorDiag": "",
[2025-06-03 20:45:33]  *** Listing of results directory ***
[2025-06-03 20:45:33] total 414612
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc    495897 May 29 02:49 pilot3.tar.gz
[2025-06-03 20:45:33] -rwx------ 1 boinc boinc     37140 May 29 02:54 runpilot2-wrapper.sh
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc      5111 May 29 02:54 queuedata.json
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc       100 Jun  3 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 20:45:33] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 16:41 run_atlas
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc       105 Jun  3 16:41 job.xml
[2025-06-03 20:45:33] -rw-r--r-- 2 boinc boinc 222535620 Jun  3 16:41 EVNT.44871834._003604.pool.root.1
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc      6636 Jun  3 16:41 init_data.xml
[2025-06-03 20:45:33] -rw-r--r-- 2 boinc boinc    508878 Jun  3 16:41 input.tar.gz
[2025-06-03 20:45:33] -rw-r--r-- 2 boinc boinc     15093 Jun  3 16:41 start_atlas.sh
[2025-06-03 20:45:33] drwxrwx--x 2 boinc boinc      4096 Jun  3 16:41 shared
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc         0 Jun  3 16:41 boinc_lockfile
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc      2559 Jun  3 16:41 pandaJob.out
[2025-06-03 20:45:33] -rw------- 1 boinc boinc    982724 Jun  3 16:41 agis_schedconf.cvmfs.json
[2025-06-03 20:45:33] drwx------ 4 boinc boinc      4096 Jun  3 16:41 pilot3
[2025-06-03 20:45:33] -rw------- 1 boinc boinc        95 Jun  3 20:42 pilot_heartbeat.json
[2025-06-03 20:45:33] -rw------- 1 boinc boinc 194810489 Jun  3 20:42 HITS.44871837._092651.pool.root.1
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc       529 Jun  3 20:42 boinc_task_state.xml
[2025-06-03 20:45:33] -rw------- 1 boinc boinc      1038 Jun  3 20:43 memory_monitor_summary.json
[2025-06-03 20:45:33] -rw------- 1 boinc boinc   1603667 Jun  3 20:43 agis_ddmendpoints.agis.ALL.json
[2025-06-03 20:45:33] -rw------- 1 boinc boinc    340185 Jun  3 20:43 log.44871837._092651.job.log.tgz.1
[2025-06-03 20:45:33] -rw------- 1 boinc boinc      7736 Jun  3 20:43 heartbeat.json
[2025-06-03 20:45:33] -rw------- 1 boinc boinc      4744 Jun  3 20:43 pilotlog.txt
[2025-06-03 20:45:33] -rw------- 1 boinc boinc   1348082 Jun  3 20:43 log.44871837._092651.job.log.1
[2025-06-03 20:45:33] -rw------- 1 boinc boinc       357 Jun  3 20:43 output.list
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc       620 Jun  3 20:43 runtime_log
[2025-06-03 20:45:33] -rw------- 1 boinc boinc   1710080 Jun  3 20:43 result.tar.gz
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc      9026 Jun  3 20:43 runtime_log.err
[2025-06-03 20:45:33] -rw------- 1 boinc boinc       665 Jun  3 20:43 hQMKDmxige7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDRdKDm8ILYEn.diag
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc        27 Jun  3 20:45 wrapper_checkpoint.txt
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc      8192 Jun  3 20:45 boinc_mmap_file
[2025-06-03 20:45:33] -rw-r--r-- 1 boinc boinc     20923 Jun  3 20:45 stderr.txt
[2025-06-03 20:45:33] HITS file was successfully produced:
[2025-06-03 20:45:33] -rw------- 1 boinc boinc 194810489 Jun  3 20:42 shared/HITS.pool.root.1
[2025-06-03 20:45:33]  *** Contents of shared directory: ***
[2025-06-03 20:45:33] total 409764
[2025-06-03 20:45:33] -rw-r--r-- 2 boinc boinc 222535620 Jun  3 16:41 ATLAS.root_0
[2025-06-03 20:45:33] -rw-r--r-- 2 boinc boinc    508878 Jun  3 16:41 input.tar.gz
[2025-06-03 20:45:33] -rw-r--r-- 2 boinc boinc     15093 Jun  3 16:41 start_atlas.sh
[2025-06-03 20:45:33] -rw------- 1 boinc boinc 194810489 Jun  3 20:42 HITS.pool.root.1
[2025-06-03 20:45:33] -rw------- 1 boinc boinc   1710080 Jun  3 20:43 result.tar.gz
20:45:35 (1278617): run_atlas exited; CPU time 56238.407970
20:45:35 (1278617): called boinc_finish(0)

</stderr_txt>
]]>

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