Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:46:06 (24260): wrapper (7.7.26015): starting
19:46:06 (24260): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 19:46:06] Arguments: --nthreads 8
[2025-05-29 19:46:06] Threads: 8
[2025-05-29 19:46:06] Checking for CVMFS
[2025-05-29 19:46:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 19:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 19:46:06] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 19:46:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 19:46:08] 2.11.2.0 26867 24885 91756 146570 0 59 18016446 25165825 4637 130560 0 13701185 99.827 14491444 1742 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 19:46:08] CVMFS is ok
[2025-05-29 19:46:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 19:46:08] Checking for apptainer binary...
[2025-05-29 19:46:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 19:46:08] Running /usr/bin/apptainer --version
[2025-05-29 19:46:08] apptainer version 1.3.2-1.el7
[2025-05-29 19:46:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 19:46:23] cg-vwn435.simple-grid.lan
[2025-05-29 19:46:23] apptainer works
[2025-05-29 19:46:23] Set ATHENA_PROC_NUMBER=8
[2025-05-29 19:46:23] Set ATHENA_CORE_NUMBER=8
[2025-05-29 19:46:23] Starting ATLAS job with PandaID=6668990379
[2025-05-29 19:46:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 01:24:51]  *** The last 200 lines of the pilot log: ***
[2025-05-30 01:24:51] 2025-05-29 23:13:35,511 | INFO     | extracted standard info from prmon json
[2025-05-30 01:24:51] 2025-05-29 23:13:35,511 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 01:24:51] 2025-05-29 23:13:35,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 01:24:51] 2025-05-29 23:13:35,511 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 01:24:51] 2025-05-29 23:13:35,511 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 01:24:51] 2025-05-29 23:13:35,518 | INFO     | fitting pss+swap vs Time
[2025-05-30 01:24:51] 2025-05-29 23:13:35,519 | INFO     | sum of square deviations: 9148487810.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,522 | INFO     | sum of deviations: 137799272670.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,522 | INFO     | mean x: 1748550861.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,522 | INFO     | mean y: 2450210.090614887
[2025-05-30 01:24:51] 2025-05-29 23:13:35,522 | INFO     | -- intersect: -26335130587.571537
[2025-05-30 01:24:51] 2025-05-29 23:13:35,522 | INFO     | intersect: -26335130587.571537
[2025-05-30 01:24:51] 2025-05-29 23:13:35,523 | INFO     | chi2: 5.706469581348057
[2025-05-30 01:24:51] 2025-05-29 23:13:35,523 | INFO     | sum of square deviations: 8711530780.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,526 | INFO     | sum of deviations: 155991376144.5
[2025-05-30 01:24:51] 2025-05-29 23:13:35,527 | INFO     | mean x: 1748550708.5
[2025-05-30 01:24:51] 2025-05-29 23:13:35,527 | INFO     | mean y: 2456464.148026316
[2025-05-30 01:24:51] 2025-05-29 23:13:35,527 | INFO     | -- intersect: -31307635661.515736
[2025-05-30 01:24:51] 2025-05-29 23:13:35,527 | INFO     | intersect: -31307635661.515736
[2025-05-30 01:24:51] 2025-05-29 23:13:35,528 | INFO     | chi2: 4.947611206769967
[2025-05-30 01:24:51] 2025-05-29 23:13:35,528 | INFO     | current chi2=4.947611206769967 (change=13.298211157708877 %)
[2025-05-30 01:24:51] 2025-05-29 23:13:35,528 | INFO     | right removable region: 303
[2025-05-30 01:24:51] 2025-05-29 23:13:35,528 | INFO     | sum of square deviations: 8711530780.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,531 | INFO     | sum of deviations: 33003432893.499985
[2025-05-30 01:24:51] 2025-05-29 23:13:35,531 | INFO     | mean x: 1748551013.5
[2025-05-30 01:24:51] 2025-05-29 23:13:35,532 | INFO     | mean y: 2486748.615131579
[2025-05-30 01:24:51] 2025-05-29 23:13:35,532 | INFO     | -- intersect: -6621858328.30241
[2025-05-30 01:24:51] 2025-05-29 23:13:35,532 | INFO     | intersect: -6621858328.30241
[2025-05-30 01:24:51] 2025-05-29 23:13:35,532 | INFO     | chi2: 1.3091562124539224
[2025-05-30 01:24:51] 2025-05-29 23:13:35,532 | INFO     | current chi2=1.3091562124539224 (change=77.05838620899725 %)
[2025-05-30 01:24:51] 2025-05-29 23:13:35,533 | INFO     | sum of square deviations: 8288713550.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,536 | INFO     | sum of deviations: 2663249264.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,536 | INFO     | mean x: 1748551166.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,536 | INFO     | mean y: 2497630.3779264214
[2025-05-30 01:24:51] 2025-05-29 23:13:35,536 | INFO     | -- intersect: -559329917.1449146
[2025-05-30 01:24:51] 2025-05-29 23:13:35,536 | INFO     | intersect: -559329917.1449146
[2025-05-30 01:24:51] 2025-05-29 23:13:35,537 | INFO     | chi2: 0.8227373142035358
[2025-05-30 01:24:51] 2025-05-29 23:13:35,537 | INFO     | current chi2=0.8227373142035358 (change=37.15514570554023 %)
[2025-05-30 01:24:51] 2025-05-29 23:13:35,538 | INFO     | sum of square deviations: 7879803557.5
[2025-05-30 01:24:51] 2025-05-29 23:13:35,541 | INFO     | sum of deviations: -1269290104.5
[2025-05-30 01:24:51] 2025-05-29 23:13:35,541 | INFO     | mean x: 1748551318.5
[2025-05-30 01:24:51] 2025-05-29 23:13:35,541 | INFO     | mean y: 2499080.5476190476
[2025-05-30 01:24:51] 2025-05-29 23:13:35,541 | INFO     | -- intersect: 284158244.96549773
[2025-05-30 01:24:51] 2025-05-29 23:13:35,541 | INFO     | intersect: 284158244.96549773
[2025-05-30 01:24:51] 2025-05-29 23:13:35,542 | INFO     | chi2: 0.8075323392768046
[2025-05-30 01:24:51] 2025-05-29 23:13:35,542 | INFO     | current chi2=0.8075323392768046 (change=1.8480959431687685 %)
[2025-05-30 01:24:51] 2025-05-29 23:13:35,542 | INFO     | left removable region: 30
[2025-05-30 01:24:51] 2025-05-29 23:13:35,542 | INFO     | sum of square deviations: 6309000152.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,545 | INFO     | sum of deviations: 12958330223.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,545 | INFO     | mean x: 1748551593.0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,545 | INFO     | mean y: 2508626.4212454213
[2025-05-30 01:24:51] 2025-05-29 23:13:35,545 | INFO     | -- intersect: -3588917654.7881217
[2025-05-30 01:24:51] 2025-05-29 23:13:35,545 | INFO     | intersect: -3588917654.7881217
[2025-05-30 01:24:51] 2025-05-29 23:13:35,546 | INFO     | chi2: 0.001447957970609436
[2025-05-30 01:24:51] 2025-05-29 23:13:35,546 | INFO     | -- intersect: -3588917654.7881217
[2025-05-30 01:24:51] 2025-05-29 23:13:35,546 | INFO     | current memory leak: 2.05 B/s (using 273 data points, chi2=0.00)
[2025-05-30 01:24:51] 2025-05-29 23:13:35,547 | INFO     | ..............................
[2025-05-30 01:24:51] 2025-05-29 23:13:35,547 | INFO     | . Timing measurements:
[2025-05-30 01:24:51] 2025-05-29 23:13:35,547 | INFO     | . get job = 0 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,547 | INFO     | . initial setup = 8 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,547 | INFO     | . payload setup = 143 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,547 | INFO     | . stage-in = 0 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,548 | INFO     | . payload execution = 18999 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,548 | INFO     | . stage-out = 3 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,548 | INFO     | . log creation = 1 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,548 | INFO     | ..............................
[2025-05-30 01:24:51] 2025-05-29 23:13:35,757 | INFO     | 
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | job summary report
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | --------------------------------------------------
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | PanDA job id: 6668990379
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | task id: 44871837
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | errors: (none)
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | pilot state: finished 
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | transexitcode: 0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | exeerrorcode: 0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,758 | INFO     | exeerrordiag: 
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | exitcode: 0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | exitmsg: OK
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | cpuconsumptiontime: 72511 s
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | nevents: 400
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | neventsw: 0
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | pid: 11852
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | pgrp: 11852
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | corecount: 8
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | event service: False
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | sizes: {0: 2404355, 1: 2405040, 2: 2405239, 12: 2405239, 23: 2405267, 34: 2405295, 45: 2405451, 55: 2405479, 66: 2405507, 77: 2405535, 88: 2405591, 96: 2406105, 98
[2025-05-30 01:24:51] 2025-05-29 23:13:35,759 | INFO     | --------------------------------------------------
[2025-05-30 01:24:51] 2025-05-29 23:13:35,760 | INFO     | 
[2025-05-30 01:24:51] 2025-05-29 23:13:35,760 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-05-30 01:24:51] 2025-05-29 23:13:36,236 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,236 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,237 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | job 6668990379 has completed (purged errors)
[2025-05-30 01:24:51] 2025-05-29 23:13:36,238 | INFO     | overall cleanup function is called
[2025-05-30 01:24:51] 2025-05-29 23:13:37,247 | INFO     | --- collectZombieJob: --- 10, [11852]
[2025-05-30 01:24:51] 2025-05-29 23:13:37,248 | INFO     | zombie collector waiting for pid 11852
[2025-05-30 01:24:51] 2025-05-29 23:13:37,248 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 01:24:51] 2025-05-29 23:13:37,248 | INFO     | collected zombie processes
[2025-05-30 01:24:51] 2025-05-29 23:13:37,248 | INFO     | will attempt to kill all subprocesses of pid=11852
[2025-05-30 01:24:51] 2025-05-29 23:13:37,365 | INFO     | process IDs to be killed: [11852] (in reverse order)
[2025-05-30 01:24:51] 2025-05-29 23:13:38,298 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 01:24:51] 2025-05-29 23:13:38,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 01:24:51] 2025-05-29 23:13:38,302 | INFO     | did not find any defunct processes belonging to 11852
[2025-05-30 01:24:51] 2025-05-29 23:13:38,305 | INFO     | did not find any defunct processes belonging to 11852
[2025-05-30 01:24:51] 2025-05-29 23:13:38,305 | INFO     | ready for new job
[2025-05-30 01:24:51] 2025-05-29 23:13:38,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 01:24:51] 2025-05-29 23:13:38,307 | INFO     | **************************************
[2025-05-30 01:24:51] 2025-05-29 23:13:38,307 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 01:24:51] 2025-05-29 23:13:38,307 | INFO     | **************************************
[2025-05-30 01:24:51] 2025-05-29 23:13:38,308 | INFO     | 
[2025-05-30 01:24:51] 2025-05-29 23:13:38,308 | INFO     | pilot is running in a VM
[2025-05-30 01:24:51] 2025-05-29 23:13:38,308 | INFO     | architecture information:
[2025-05-30 01:24:51] 2025-05-29 23:13:38,321 | INFO     | executing command: cat /etc/os-release
[2025-05-30 01:24:51] 2025-05-29 23:13:38,485 | INFO     | cat /etc/os-release:
[2025-05-30 01:24:51] NAME="CentOS Linux"
[2025-05-30 01:24:51] VERSION="7 (Core)"
[2025-05-30 01:24:51] ID="centos"
[2025-05-30 01:24:51] ID_LIKE="rhel fedora"
[2025-05-30 01:24:51] VERSION_ID="7"
[2025-05-30 01:24:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 01:24:51] ANSI_COLOR="0;31"
[2025-05-30 01:24:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 01:24:51] HOME_URL="https://www.centos.org/"
[2025-05-30 01:24:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 01:24:51] 
[2025-05-30 01:24:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 01:24:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 01:24:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 01:24:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 01:24:51] 
[2025-05-30 01:24:51] 2025-05-29 23:13:38,485 | INFO     | **************************************
[2025-05-30 01:24:51] 2025-05-29 23:13:38,989 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-05-30 01:24:51] 2025-05-29 23:13:39,222 | INFO     | sufficient remaining disk space (495104032768 B)
[2025-05-30 01:24:51] 2025-05-29 23:13:39,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 01:24:51] 2025-05-29 23:13:39,222 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 01:24:51] 2025-05-29 23:13:39,223 | INFO     | update_server=False
[2025-05-30 01:24:51] 2025-05-29 23:13:39,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 01:24:51] 2025-05-29 23:13:39,223 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-30 01:24:51] 2025-05-29 23:13:39,223 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 01:24:51] 2025-05-29 23:13:39,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 01:24:51] 2025-05-29 23:13:39,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 01:24:51] 2025-05-29 23:13:39,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 01:24:51] 2025-05-29 23:13:39,476 | INFO     | aborting loop
[2025-05-30 01:24:51] 2025-05-29 23:13:39,814 | INFO     | all data control threads have been joined
[2025-05-30 01:24:51] 2025-05-29 23:13:40,229 | INFO     | [job] retrieve thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:40,234 | INFO     | all payload control threads have been joined
[2025-05-30 01:24:51] 2025-05-29 23:13:40,331 | INFO     | [data] copytool_in thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:40,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 01:24:51] 2025-05-29 23:13:40,481 | INFO     | [job] job monitor thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:40,516 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:40,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 01:24:51] 2025-05-29 23:13:40,633 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:40,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 01:24:51] 2025-05-29 23:13:40,744 | INFO     | all job control threads have been joined
[2025-05-30 01:24:51] 2025-05-29 23:13:40,820 | INFO     | [data] control thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,175 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,205 | INFO     | [job] validate thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,240 | INFO     | [payload] control thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,372 | INFO     | [payload] validate_post thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,376 | INFO     | [payload] failed_post thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,567 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,699 | INFO     | [job] queue monitor thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:41,750 | INFO     | [job] control thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:42,453 | INFO     | [data] copytool_out thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:44,579 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 01:24:51] 2025-05-29 23:13:45,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885169825600)>', '<ExcThread(monitor, started 139884568229632)>']
[2025-05-30 01:24:51] 2025-05-29 23:13:46,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 01:24:51] 2025-05-29 23:13:46,265 | INFO     | [monitor] control thread has ended
[2025-05-30 01:24:51] 2025-05-29 23:13:50,997 | INFO     | all workflow threads have been joined
[2025-05-30 01:24:51] 2025-05-29 23:13:50,998 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 01:24:51] 2025-05-29 23:13:50,998 | INFO     | traces error code: 0
[2025-05-30 01:24:51] 2025-05-29 23:13:50,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 01:24:51] 2025-05-29 23:13:51,239 [wrapper] ==== pilot stdout END ====
[2025-05-30 01:24:51] 2025-05-29 23:13:51,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 01:24:51] 2025-05-29 23:13:51,281 [wrapper] pilotpid: 31622
[2025-05-30 01:24:51] 2025-05-29 23:13:51,296 [wrapper] Pilot exit status: 0
[2025-05-30 01:24:51] 2025-05-29 23:13:51,522 [wrapper] pandaids: 6668990379
[2025-05-30 01:24:51] 2025-05-29 23:13:52,468 [wrapper] cleanup supervisor_pilot 13194 31623
[2025-05-30 01:24:51] 2025-05-29 23:13:52,552 [wrapper] Test setup, not cleaning
[2025-05-30 01:24:51] 2025-05-29 23:13:52,611 [wrapper] apfmon messages muted
[2025-05-30 01:24:51] 2025-05-29 23:13:52,736 [wrapper] ==== wrapper stdout END ====
[2025-05-30 01:24:51] 2025-05-29 23:13:52,840 [wrapper] ==== wrapper stderr END ====
[2025-05-30 01:24:51]  *** Error codes and diagnostics ***
[2025-05-30 01:24:51]     "exeErrorCode": 0,
[2025-05-30 01:24:51]     "exeErrorDiag": "",
[2025-05-30 01:24:51]     "pilotErrorCode": 0,
[2025-05-30 01:24:51]     "pilotErrorDiag": "",
[2025-05-30 01:24:51]  *** Listing of results directory ***
[2025-05-30 01:24:52] total 424744
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc    495897 May 29 01:19 pilot3.tar.gz
[2025-05-30 01:24:52] -rwx------. 1 boinc boinc     37140 May 29 01:47 runpilot2-wrapper.sh
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc      5111 May 29 01:47 queuedata.json
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc       100 May 29 19:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 01:24:52] -rwxr-xr-x. 1 boinc boinc      7986 May 29 19:46 run_atlas
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc       105 May 29 19:46 job.xml
[2025-05-30 01:24:52] -rw-r--r--. 2 boinc boinc 223360885 May 29 19:46 EVNT.44871834._003577.pool.root.1
[2025-05-30 01:24:52] -rw-r--r--. 2 boinc boinc     15093 May 29 19:46 start_atlas.sh
[2025-05-30 01:24:52] drwxrwx--x. 2 boinc boinc        68 May 29 19:46 shared
[2025-05-30 01:24:52] -rw-r--r--. 2 boinc boinc    508877 May 29 19:46 input.tar.gz
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc      6371 May 29 19:46 init_data.xml
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc         0 May 29 19:46 boinc_lockfile
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc      2558 May 29 19:46 pandaJob.out
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc    992706 May 29 19:49 agis_schedconf.cvmfs.json
[2025-05-30 01:24:52] drwx------. 4 boinc boinc      4096 May 29 19:49 pilot3
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc 203584649 May 30 01:10 HITS.44871837._091972.pool.root.1
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc       531 May 30 01:10 boinc_task_state.xml
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc      1013 May 30 01:11 memory_monitor_summary.json
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc   1603667 May 30 01:11 agis_ddmendpoints.agis.ALL.json
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc    422643 May 30 01:12 log.44871837._091972.job.log.tgz.1
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc        95 May 30 01:13 pilot_heartbeat.json
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc      7688 May 30 01:13 heartbeat.json
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc      4539 May 30 01:13 pilotlog.txt
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc   1655298 May 30 01:13 log.44871837._091972.job.log.1
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc       357 May 30 01:13 output.list
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc       620 May 30 01:13 runtime_log
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc   2099200 May 30 01:13 result.tar.gz
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc      8659 May 30 01:13 runtime_log.err
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc       657 May 30 01:13 aTyKDmOffe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuJdKDmBLkGcn.diag
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc      8192 May 30 01:24 boinc_mmap_file
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc        28 May 30 01:24 wrapper_checkpoint.txt
[2025-05-30 01:24:52] -rw-r--r--. 1 boinc boinc     20506 May 30 01:24 stderr.txt
[2025-05-30 01:24:52] HITS file was successfully produced:
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc 203584649 May 30 01:10 shared/HITS.pool.root.1
[2025-05-30 01:24:52]  *** Contents of shared directory: ***
[2025-05-30 01:24:52] total 419512
[2025-05-30 01:24:52] -rw-r--r--. 2 boinc boinc 223360885 May 29 19:46 ATLAS.root_0
[2025-05-30 01:24:52] -rw-r--r--. 2 boinc boinc     15093 May 29 19:46 start_atlas.sh
[2025-05-30 01:24:52] -rw-r--r--. 2 boinc boinc    508877 May 29 19:46 input.tar.gz
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc 203584649 May 30 01:10 HITS.pool.root.1
[2025-05-30 01:24:52] -rw-------. 1 boinc boinc   2099200 May 30 01:13 result.tar.gz
01:24:53 (24260): run_atlas exited; CPU time 72779.827796
01:24:53 (24260): called boinc_finish(0)

</stderr_txt>
]]>

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