Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:31:45 (29817): wrapper (7.7.26015): starting
01:31:45 (29817): wrapper: running run_atlas (--nthreads 8)
[2025-05-30 01:31:45] Arguments: --nthreads 8
[2025-05-30 01:31:45] Threads: 8
[2025-05-30 01:31:45] Checking for CVMFS
[2025-05-30 01:31:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-30 01:31:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-30 01:31:47] Running cvmfs_config stat atlas.cern.ch
[2025-05-30 01:31:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-30 01:31:47] 2.11.2.0 22299 25231 91544 146580 2 114 24918594 25165825 4353 130560 0 14066585 99.755 15865609 1855 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-30 01:31:47] CVMFS is ok
[2025-05-30 01:31:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-30 01:31:47] Checking for apptainer binary...
[2025-05-30 01:31:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-30 01:31:47] Running /usr/bin/apptainer --version
[2025-05-30 01:31:47] apptainer version 1.3.2-1.el7
[2025-05-30 01:31:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-30 01:31:49] cg-vwn422.simple-grid.lan
[2025-05-30 01:31:49] apptainer works
[2025-05-30 01:31:49] Set ATHENA_PROC_NUMBER=8
[2025-05-30 01:31:49] Set ATHENA_CORE_NUMBER=8
[2025-05-30 01:31:49] Starting ATLAS job with PandaID=6668990016
[2025-05-30 01:31:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-30 08:00:53]  *** The last 200 lines of the pilot log: ***
[2025-05-30 08:00:53] 2025-05-30 04:38:51,188 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6668990016/memory_monitor_summary.json (trf name=prmon)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,194 | INFO     | extracted standard info from prmon json
[2025-05-30 08:00:53] 2025-05-30 04:38:51,194 | INFO     | extracted standard memory fields from prmon json
[2025-05-30 08:00:53] 2025-05-30 04:38:51,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-30 08:00:53] 2025-05-30 04:38:51,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-30 08:00:53] 2025-05-30 04:38:51,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-30 08:00:53] 2025-05-30 04:38:51,200 | INFO     | fitting pss+swap vs Time
[2025-05-30 08:00:53] 2025-05-30 04:38:51,201 | INFO     | sum of square deviations: 8372156975.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,204 | INFO     | sum of deviations: -61810851558.5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,204 | INFO     | mean x: 1748570706.5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,204 | INFO     | mean y: 2510974.216666667
[2025-05-30 08:00:53] 2025-05-30 04:38:51,204 | INFO     | -- intersect: 12912044885.45977
[2025-05-30 08:00:53] 2025-05-30 04:38:51,204 | INFO     | intersect: 12912044885.45977
[2025-05-30 08:00:53] 2025-05-30 04:38:51,205 | INFO     | chi2: 3.36725249798687
[2025-05-30 08:00:53] 2025-05-30 04:38:51,206 | INFO     | sum of square deviations: 7960484140.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,208 | INFO     | sum of deviations: -20376821066.999992
[2025-05-30 08:00:53] 2025-05-30 04:38:51,209 | INFO     | mean x: 1748570554.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,209 | INFO     | mean y: 2526172.0033898307
[2025-05-30 08:00:53] 2025-05-30 04:38:51,209 | INFO     | -- intersect: 4478423451.020272
[2025-05-30 08:00:53] 2025-05-30 04:38:51,209 | INFO     | intersect: 4478423451.020272
[2025-05-30 08:00:53] 2025-05-30 04:38:51,209 | INFO     | chi2: 1.7605268001623418
[2025-05-30 08:00:53] 2025-05-30 04:38:51,210 | INFO     | current chi2=1.7605268001623418 (change=47.71622261131643 %)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,210 | INFO     | sum of square deviations: 7562532492.5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,213 | INFO     | sum of deviations: -20043633089.000004
[2025-05-30 08:00:53] 2025-05-30 04:38:51,213 | INFO     | mean x: 1748570401.5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,213 | INFO     | mean y: 2526299.703448276
[2025-05-30 08:00:53] 2025-05-30 04:38:51,213 | INFO     | -- intersect: 4636913469.968081
[2025-05-30 08:00:53] 2025-05-30 04:38:51,213 | INFO     | intersect: 4636913469.968081
[2025-05-30 08:00:53] 2025-05-30 04:38:51,214 | INFO     | chi2: 1.7596380915830363
[2025-05-30 08:00:53] 2025-05-30 04:38:51,214 | INFO     | current chi2=1.7596380915830363 (change=0.05047969614682964 %)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,214 | INFO     | right removable region: 289
[2025-05-30 08:00:53] 2025-05-30 04:38:51,215 | INFO     | sum of square deviations: 7960484140.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,221 | INFO     | sum of deviations: -108862146899.00002
[2025-05-30 08:00:53] 2025-05-30 04:38:51,226 | INFO     | mean x: 1748570859.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,226 | INFO     | mean y: 2528276.9322033897
[2025-05-30 08:00:53] 2025-05-30 04:38:51,226 | INFO     | -- intersect: 23914789688.179565
[2025-05-30 08:00:53] 2025-05-30 04:38:51,226 | INFO     | intersect: 23914789688.179565
[2025-05-30 08:00:53] 2025-05-30 04:38:51,227 | INFO     | chi2: 1.8962467568429604
[2025-05-30 08:00:53] 2025-05-30 04:38:51,227 | INFO     | current chi2=1.8962467568429604 (change=43.68563812851452 %)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,228 | INFO     | sum of square deviations: 7562532492.5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,230 | INFO     | sum of deviations: -108922287897.00003
[2025-05-30 08:00:53] 2025-05-30 04:38:51,230 | INFO     | mean x: 1748571011.5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,231 | INFO     | mean y: 2528280.4344827584
[2025-05-30 08:00:53] 2025-05-30 04:38:51,231 | INFO     | -- intersect: 25186995958.66728
[2025-05-30 08:00:53] 2025-05-30 04:38:51,231 | INFO     | intersect: 25186995958.66728
[2025-05-30 08:00:53] 2025-05-30 04:38:51,231 | INFO     | chi2: 1.8770682997281294
[2025-05-30 08:00:53] 2025-05-30 04:38:51,231 | INFO     | current chi2=1.8770682997281294 (change=1.0113903713017292 %)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,231 | INFO     | left removable region: 20
[2025-05-30 08:00:53] 2025-05-30 04:38:51,232 | INFO     | sum of square deviations: 6035722470.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,234 | INFO     | sum of deviations: -50627052541.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,234 | INFO     | mean x: 1748570981.0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,235 | INFO     | mean y: 2537809.9516728623
[2025-05-30 08:00:53] 2025-05-30 04:38:51,235 | INFO     | -- intersect: 14669380986.847265
[2025-05-30 08:00:53] 2025-05-30 04:38:51,235 | INFO     | intersect: 14669380986.847265
[2025-05-30 08:00:53] 2025-05-30 04:38:51,235 | INFO     | chi2: 0.21221960331647174
[2025-05-30 08:00:53] 2025-05-30 04:38:51,235 | INFO     | -- intersect: 14669380986.847265
[2025-05-30 08:00:53] 2025-05-30 04:38:51,235 | INFO     | current memory leak: -8.39 B/s (using 269 data points, chi2=0.21)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,236 | INFO     | ..............................
[2025-05-30 08:00:53] 2025-05-30 04:38:51,236 | INFO     | . Timing measurements:
[2025-05-30 08:00:53] 2025-05-30 04:38:51,236 | INFO     | . get job = 0 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | . initial setup = 2 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | . payload setup = 16 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | . stage-in = 0 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | . payload execution = 18262 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | . stage-out = 3 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | . log creation = 1 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,237 | INFO     | ..............................
[2025-05-30 08:00:53] 2025-05-30 04:38:51,366 | INFO     | 
[2025-05-30 08:00:53] 2025-05-30 04:38:51,366 | INFO     | job summary report
[2025-05-30 08:00:53] 2025-05-30 04:38:51,366 | INFO     | --------------------------------------------------
[2025-05-30 08:00:53] 2025-05-30 04:38:51,366 | INFO     | PanDA job id: 6668990016
[2025-05-30 08:00:53] 2025-05-30 04:38:51,366 | INFO     | task id: 44871837
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | errors: (none)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | pilot state: finished 
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | transexitcode: 0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | exeerrorcode: 0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | exeerrordiag: 
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | exitcode: 0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | exitmsg: OK
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | cpuconsumptiontime: 69646 s
[2025-05-30 08:00:53] 2025-05-30 04:38:51,367 | INFO     | nevents: 400
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | neventsw: 0
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | pid: 9689
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | pgrp: 9689
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | corecount: 8
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | event service: False
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | sizes: {0: 2405234, 1: 2405234, 8: 2405468, 12: 2405496, 18282: 2437130, 18288: 2446071, 18289: 2446255, 18380: 2446425}
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | --------------------------------------------------
[2025-05-30 08:00:53] 2025-05-30 04:38:51,368 | INFO     | 
[2025-05-30 08:00:53] 2025-05-30 04:38:51,369 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-05-30 08:00:53] 2025-05-30 04:38:51,806 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,807 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,809 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-30 08:00:53] 2025-05-30 04:38:51,809 | INFO     | job 6668990016 has completed (purged errors)
[2025-05-30 08:00:53] 2025-05-30 04:38:51,809 | INFO     | overall cleanup function is called
[2025-05-30 08:00:53] 2025-05-30 04:38:52,818 | INFO     | --- collectZombieJob: --- 10, [9689]
[2025-05-30 08:00:53] 2025-05-30 04:38:52,818 | INFO     | zombie collector waiting for pid 9689
[2025-05-30 08:00:53] 2025-05-30 04:38:52,818 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-30 08:00:53] 2025-05-30 04:38:52,818 | INFO     | collected zombie processes
[2025-05-30 08:00:53] 2025-05-30 04:38:52,818 | INFO     | will attempt to kill all subprocesses of pid=9689
[2025-05-30 08:00:53] 2025-05-30 04:38:52,969 | INFO     | process IDs to be killed: [9689] (in reverse order)
[2025-05-30 08:00:53] 2025-05-30 04:38:53,699 | WARNING  | found no corresponding commands to process id(s)
[2025-05-30 08:00:53] 2025-05-30 04:38:53,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-30 08:00:53] 2025-05-30 04:38:53,703 | INFO     | did not find any defunct processes belonging to 9689
[2025-05-30 08:00:53] 2025-05-30 04:38:53,707 | INFO     | did not find any defunct processes belonging to 9689
[2025-05-30 08:00:53] 2025-05-30 04:38:53,707 | INFO     | ready for new job
[2025-05-30 08:00:53] 2025-05-30 04:38:53,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-30 08:00:53] 2025-05-30 04:38:53,709 | INFO     | **************************************
[2025-05-30 08:00:53] 2025-05-30 04:38:53,710 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-30 08:00:53] 2025-05-30 04:38:53,710 | INFO     | **************************************
[2025-05-30 08:00:53] 2025-05-30 04:38:53,710 | INFO     | 
[2025-05-30 08:00:53] 2025-05-30 04:38:53,710 | INFO     | pilot is running in a VM
[2025-05-30 08:00:53] 2025-05-30 04:38:53,711 | INFO     | architecture information:
[2025-05-30 08:00:53] 2025-05-30 04:38:53,711 | INFO     | executing command: cat /etc/os-release
[2025-05-30 08:00:53] 2025-05-30 04:38:54,007 | INFO     | cat /etc/os-release:
[2025-05-30 08:00:53] NAME="CentOS Linux"
[2025-05-30 08:00:53] VERSION="7 (Core)"
[2025-05-30 08:00:53] ID="centos"
[2025-05-30 08:00:53] ID_LIKE="rhel fedora"
[2025-05-30 08:00:53] VERSION_ID="7"
[2025-05-30 08:00:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-30 08:00:53] ANSI_COLOR="0;31"
[2025-05-30 08:00:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-30 08:00:53] HOME_URL="https://www.centos.org/"
[2025-05-30 08:00:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-30 08:00:53] 
[2025-05-30 08:00:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-30 08:00:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-30 08:00:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-30 08:00:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-30 08:00:53] 
[2025-05-30 08:00:53] 2025-05-30 04:38:54,008 | INFO     | **************************************
[2025-05-30 08:00:53] 2025-05-30 04:38:54,510 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-05-30 08:00:53] 2025-05-30 04:38:54,794 | INFO     | sufficient remaining disk space (495909339136 B)
[2025-05-30 08:00:53] 2025-05-30 04:38:54,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-30 08:00:53] 2025-05-30 04:38:54,794 | INFO     | current server update state: UPDATING_FINAL
[2025-05-30 08:00:53] 2025-05-30 04:38:54,794 | INFO     | update_server=False
[2025-05-30 08:00:53] 2025-05-30 04:38:54,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-30 08:00:53] 2025-05-30 04:38:54,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-30 08:00:53] 2025-05-30 04:38:54,894 | INFO     | aborting loop
[2025-05-30 08:00:53] 2025-05-30 04:38:55,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-30 08:00:53] 2025-05-30 04:38:55,479 | INFO     | all job control threads have been joined
[2025-05-30 08:00:53] 2025-05-30 04:38:55,696 | INFO     | all data control threads have been joined
[2025-05-30 08:00:53] 2025-05-30 04:38:55,784 | INFO     | found 0 job(s) in 20 queues
[2025-05-30 08:00:53] 2025-05-30 04:38:55,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-30 08:00:53] 2025-05-30 04:38:55,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-30 08:00:53] 2025-05-30 04:38:55,799 | INFO     | [job] retrieve thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:55,900 | INFO     | [job] job monitor thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:55,973 | INFO     | [data] copytool_in thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,236 | INFO     | [payload] validate_post thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,252 | INFO     | all payload control threads have been joined
[2025-05-30 08:00:53] 2025-05-30 04:38:56,336 | INFO     | [job] create_data_payload thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-30 08:00:53] 2025-05-30 04:38:56,390 | INFO     | [payload] validate_pre thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-30 08:00:53] 2025-05-30 04:38:56,485 | INFO     | [job] control thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,494 | INFO     | [job] validate thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,702 | INFO     | [data] control thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:56,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:57,085 | INFO     | [data] copytool_out thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:57,145 | INFO     | [payload] execute_payloads thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:57,163 | INFO     | [payload] failed_post thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:57,258 | INFO     | [payload] control thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:38:57,385 | INFO     | [job] queue monitor thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:39:00,415 | INFO     | [data] queue_monitor thread has finished
[2025-05-30 08:00:53] 2025-05-30 04:39:02,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237787789120)>', '<ExcThread(monitor, started 140237493745408)>']
[2025-05-30 08:00:53] 2025-05-30 04:39:02,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-30 08:00:53] 2025-05-30 04:39:02,826 | INFO     | [monitor] control thread has ended
[2025-05-30 08:00:53] 2025-05-30 04:39:07,301 | INFO     | all workflow threads have been joined
[2025-05-30 08:00:53] 2025-05-30 04:39:07,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-30 08:00:53] 2025-05-30 04:39:07,301 | INFO     | traces error code: 0
[2025-05-30 08:00:53] 2025-05-30 04:39:07,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-30 08:00:53] 2025-05-30 04:39:07,697 [wrapper] ==== pilot stdout END ====
[2025-05-30 08:00:53] 2025-05-30 04:39:07,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-30 08:00:53] 2025-05-30 04:39:07,843 [wrapper] pilotpid: 1148
[2025-05-30 08:00:53] 2025-05-30 04:39:07,923 [wrapper] Pilot exit status: 0
[2025-05-30 08:00:53] 2025-05-30 04:39:08,346 [wrapper] pandaids: 6668990016
[2025-05-30 08:00:53] 2025-05-30 04:39:09,220 [wrapper] cleanup supervisor_pilot  7298 1149
[2025-05-30 08:00:53] 2025-05-30 04:39:09,271 [wrapper] Test setup, not cleaning
[2025-05-30 08:00:53] 2025-05-30 04:39:09,348 [wrapper] apfmon messages muted
[2025-05-30 08:00:53] 2025-05-30 04:39:09,410 [wrapper] ==== wrapper stdout END ====
[2025-05-30 08:00:53] 2025-05-30 04:39:09,484 [wrapper] ==== wrapper stderr END ====
[2025-05-30 08:00:53]  *** Error codes and diagnostics ***
[2025-05-30 08:00:53]     "exeErrorCode": 0,
[2025-05-30 08:00:53]     "exeErrorDiag": "",
[2025-05-30 08:00:53]     "pilotErrorCode": 0,
[2025-05-30 08:00:53]     "pilotErrorDiag": "",
[2025-05-30 08:00:53]  *** Listing of results directory ***
[2025-05-30 08:00:53] total 415428
[2025-05-30 08:00:53] -rwx------. 1 boinc boinc     37140 May 29 01:14 runpilot2-wrapper.sh
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc      5111 May 29 01:14 queuedata.json
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc    495897 May 29 01:14 pilot3.tar.gz
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc       100 May 30 01:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-30 08:00:53] -rwxr-xr-x. 1 boinc boinc      7986 May 30 01:31 run_atlas
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc       105 May 30 01:31 job.xml
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc      6371 May 30 01:31 init_data.xml
[2025-05-30 08:00:53] -rw-r--r--. 2 boinc boinc 221256469 May 30 01:31 EVNT.44871834._003568.pool.root.1
[2025-05-30 08:00:53] -rw-r--r--. 2 boinc boinc     15093 May 30 01:31 start_atlas.sh
[2025-05-30 08:00:53] drwxrwx--x. 2 boinc boinc        68 May 30 01:31 shared
[2025-05-30 08:00:53] -rw-r--r--. 2 boinc boinc    508865 May 30 01:31 input.tar.gz
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc         0 May 30 01:31 boinc_lockfile
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc      2559 May 30 01:31 pandaJob.out
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc    992366 May 30 01:32 agis_schedconf.cvmfs.json
[2025-05-30 08:00:53] drwx------. 4 boinc boinc      4096 May 30 01:32 pilot3
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc 196342365 May 30 06:35 HITS.44871837._091748.pool.root.1
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc       531 May 30 06:35 boinc_task_state.xml
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc      1016 May 30 06:37 memory_monitor_summary.json
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc   1603667 May 30 06:37 agis_ddmendpoints.agis.ALL.json
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc    416688 May 30 06:37 log.44871837._091748.job.log.tgz.1
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc        95 May 30 06:38 pilot_heartbeat.json
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc      7689 May 30 06:38 heartbeat.json
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc      4416 May 30 06:39 pilotlog.txt
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc   1568903 May 30 06:39 log.44871837._091748.job.log.1
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc       357 May 30 06:39 output.list
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc       620 May 30 06:39 runtime_log
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc   2007040 May 30 06:39 result.tar.gz
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc       657 May 30 06:39 uzUKDmN9ee7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0HUKDm8Kuvtm.diag
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc      8659 May 30 06:39 runtime_log.err
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc      8192 May 30 08:00 boinc_mmap_file
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc        28 May 30 08:00 wrapper_checkpoint.txt
[2025-05-30 08:00:53] -rw-r--r--. 1 boinc boinc     20480 May 30 08:00 stderr.txt
[2025-05-30 08:00:53] HITS file was successfully produced:
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc 196342365 May 30 06:35 shared/HITS.pool.root.1
[2025-05-30 08:00:53]  *** Contents of shared directory: ***
[2025-05-30 08:00:53] total 410292
[2025-05-30 08:00:53] -rw-r--r--. 2 boinc boinc 221256469 May 30 01:31 ATLAS.root_0
[2025-05-30 08:00:53] -rw-r--r--. 2 boinc boinc     15093 May 30 01:31 start_atlas.sh
[2025-05-30 08:00:53] -rw-r--r--. 2 boinc boinc    508865 May 30 01:31 input.tar.gz
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc 196342365 May 30 06:35 HITS.pool.root.1
[2025-05-30 08:00:53] -rw-------. 1 boinc boinc   2007040 May 30 06:39 result.tar.gz
08:00:55 (29817): run_atlas exited; CPU time 69890.584904
08:00:55 (29817): called boinc_finish(0)

</stderr_txt>
]]>

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