Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:40:09 (3208224): wrapper (7.7.26015): starting
22:40:09 (3208224): wrapper: running run_atlas (--nthreads 12)
[2025-05-28 22:40:09] Arguments: --nthreads 12
[2025-05-28 22:40:09] Threads: 12
[2025-05-28 22:40:09] Checking for CVMFS
[2025-05-28 22:40:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 22:40:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 22:40:10] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 22:40:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 22:40:11] 2.11.5.0 4147171 14850 237260 146544 3 686 42254020 45568001 9418 130560 0 163645245 99.824 83066153 25705 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-28 22:40:11] CVMFS is ok
[2025-05-28 22:40:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 22:40:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 22:40:11] Further information can be found at the LHC@home message board.
[2025-05-28 22:40:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 22:40:11] Checking for apptainer binary...
[2025-05-28 22:40:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 22:40:11] Running /usr/bin/apptainer --version
[2025-05-28 22:40:11] apptainer version 1.4.0-1.el9
[2025-05-28 22:40:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 22:40:11] wns0047.triumf.lcg
[2025-05-28 22:40:11] apptainer works
[2025-05-28 22:40:11] Set ATHENA_PROC_NUMBER=12
[2025-05-28 22:40:11] Set ATHENA_CORE_NUMBER=12
[2025-05-28 22:40:11] Starting ATLAS job with PandaID=6669134732
[2025-05-28 22:40:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 22:44:10]  *** The last 200 lines of the pilot log: ***
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | WARNING  | wrong length of table data, x=[1748497288.0], y=[908.0] (must be same and length>=4)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | ..............................
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . Timing measurements:
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . get job = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . initial setup = 4 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . payload setup = 9 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . stage-in = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . payload execution = 30 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . stage-out = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . log creation = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | ..............................
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6669134732/pilotlog.txt
[2025-05-28 22:44:10] 2025-05-29 05:43:55,263 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-28 22:44:10] - Log from pilotlog.txt -
[2025-05-28 22:44:10] 2025-05-29 05:43:55,224 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-28 22:44:10] 2025-05-29 05:43:55,224 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6669134732/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | INFO     | extracted standard info from prmon json
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | WARNING  | wrong length of table data, x=[1748497288.0], y=[908.0] (must be same and length>=4)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | ..............................
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . Timing measurements:
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . get job = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . initial setup = 4 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . payload setup = 9 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . stage-in = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . payload execution = 30 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . stage-out = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . log creation = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | ..............................
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6669134732/pilotlog.txt
[2025-05-28 22:44:10] 2025-05-29 05:43:55,263 | WARNING  | 
[2025-05-28 22:44:10] [begin log extracts]
[2025-05-28 22:44:10] - Log from pilotlog.txt -
[2025-05-28 22:44:10] 2025-05-29 05:43:55,224 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-28 22:44:10] 2025-05-29 05:43:55,224 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6669134732/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | INFO     | extracted standard info from prmon json
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 22:44:10] 2025-05-29 05:43:55,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | WARNING  | wrong length of table data, x=[1748497288.0], y=[908.0] (must be same and length>=4)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | ..............................
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . Timing measurements:
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . get job = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,226 | INFO     | . initial setup = 4 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . payload setup = 9 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . stage-in = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . payload execution = 30 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . stage-out = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | . log creation = 0 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | ..............................
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-28 22:44:10] 2025-05-29 05:43:55,227 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6669134732/pilotlog.txt
[2025-05-28 22:44:10] [end log extracts]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,264 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,264 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | 
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | job summary report
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | --------------------------------------------------
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | PanDA job id: 6669134732
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | task id: 44871837
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-28 22:41:39,072 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 22:44:10] 2025-05-29 05:43:55,397 | INFO     | pilot state: failed 
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | transexitcode: 65
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | exeerrorcode: 65
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | exitcode: 65
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | cpuconsumptiontime: 16 s
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | nevents: 0
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | neventsw: 0
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | pid: 3218081
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | pgrp: 3218081
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | corecount: 12
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | event service: False
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | sizes: {0: 2405231, 1: 2405231, 11: 2405259, 14: 2405493, 22: 2405521, 44: 2428862, 45: 2433097, 47: 2433125, 171: 2433355}
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | --------------------------------------------------
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | 
[2025-05-28 22:44:10] 2025-05-29 05:43:55,398 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-28 22:44:10] 2025-05-29 05:43:55,596 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 22:44:10] 2025-05-29 05:43:55,598 | INFO     | job 6669134732 has completed (purged errors)
[2025-05-28 22:44:10] 2025-05-29 05:43:55,598 | INFO     | overall cleanup function is called
[2025-05-28 22:44:10] 2025-05-29 05:43:56,604 | INFO     | --- collectZombieJob: --- 10, [3218081]
[2025-05-28 22:44:10] 2025-05-29 05:43:56,604 | INFO     | zombie collector waiting for pid 3218081
[2025-05-28 22:44:10] 2025-05-29 05:43:56,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 22:44:10] 2025-05-29 05:43:56,604 | INFO     | collected zombie processes
[2025-05-28 22:44:10] 2025-05-29 05:43:56,604 | INFO     | will attempt to kill all subprocesses of pid=3218081
[2025-05-28 22:44:10] 2025-05-29 05:43:56,725 | INFO     | process IDs to be killed: [3218081] (in reverse order)
[2025-05-28 22:44:10] 2025-05-29 05:43:56,773 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 22:44:10] 2025-05-29 05:43:56,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 22:44:10] 2025-05-29 05:43:56,779 | INFO     | did not find any defunct processes belonging to 3218081
[2025-05-28 22:44:10] 2025-05-29 05:43:56,784 | INFO     | did not find any defunct processes belonging to 3218081
[2025-05-28 22:44:10] 2025-05-29 05:43:56,784 | INFO     | ready for new job
[2025-05-28 22:44:10] 2025-05-29 05:43:56,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 22:44:10] 2025-05-29 05:43:56,786 | INFO     | **************************************
[2025-05-28 22:44:10] 2025-05-29 05:43:56,786 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 22:44:10] 2025-05-29 05:43:56,786 | INFO     | **************************************
[2025-05-28 22:44:10] 2025-05-29 05:43:56,786 | INFO     | 
[2025-05-28 22:44:10] 2025-05-29 05:43:56,788 | INFO     | architecture information:
[2025-05-28 22:44:10] 2025-05-29 05:43:56,788 | INFO     | executing command: cat /etc/os-release
[2025-05-28 22:44:10] 2025-05-29 05:43:56,800 | INFO     | cat /etc/os-release:
[2025-05-28 22:44:10] NAME="CentOS Linux"
[2025-05-28 22:44:10] VERSION="7 (Core)"
[2025-05-28 22:44:10] ID="centos"
[2025-05-28 22:44:10] ID_LIKE="rhel fedora"
[2025-05-28 22:44:10] VERSION_ID="7"
[2025-05-28 22:44:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 22:44:10] ANSI_COLOR="0;31"
[2025-05-28 22:44:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 22:44:10] HOME_URL="https://www.centos.org/"
[2025-05-28 22:44:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 22:44:10] 
[2025-05-28 22:44:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 22:44:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 22:44:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 22:44:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 22:44:10] 
[2025-05-28 22:44:10] 2025-05-29 05:43:56,801 | INFO     | **************************************
[2025-05-28 22:44:10] 2025-05-29 05:43:57,014 | INFO     | PID=3211779 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-28 22:44:10] 2025-05-29 05:43:57,015 | INFO     | .. there are 7 such processes running
[2025-05-28 22:44:10] 2025-05-29 05:43:57,304 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-28 22:44:10] 2025-05-29 05:43:57,317 | INFO     | sufficient remaining disk space (2098288656384 B)
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | INFO     | update_server=False
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 22:44:10] 2025-05-29 05:43:57,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 22:44:10] 2025-05-29 05:43:57,370 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 22:44:10] 2025-05-29 05:43:57,552 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-28 22:44:10] 2025-05-29 05:43:57,552 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-28 22:44:10] 2025-05-29 05:43:57,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 22:44:10] 2025-05-29 05:43:57,554 | INFO     | will abort loop
[2025-05-28 22:44:10] 2025-05-29 05:43:57,631 | INFO     | all data control threads have been joined
[2025-05-28 22:44:10] 2025-05-29 05:43:57,975 | INFO     | all payload control threads have been joined
[2025-05-28 22:44:10] 2025-05-29 05:43:58,250 | INFO     | all job control threads have been joined
[2025-05-28 22:44:10] 2025-05-29 05:43:58,324 | INFO     | [job] retrieve thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,324 | INFO     | [job] queue monitor thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,350 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,367 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,420 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,541 | INFO     | [data] copytool_in thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,558 | INFO     | [job] job monitor thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,637 | INFO     | [data] control thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:58,981 | INFO     | [payload] control thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:59,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 22:44:10] 2025-05-29 05:43:59,256 | INFO     | [job] control thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:59,348 | INFO     | [payload] failed_post thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:59,377 | INFO     | [data] copytool_out thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:59,589 | INFO     | [job] validate thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:59,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:43:59,805 | INFO     | [payload] validate_post thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:44:03,150 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 22:44:10] 2025-05-29 05:44:04,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088478947136)>', '<ExcThread(monitor, started 140087337678592)>']
[2025-05-28 22:44:10] 2025-05-29 05:44:05,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 22:44:10] 2025-05-29 05:44:05,361 | INFO     | [monitor] control thread has ended
[2025-05-28 22:44:10] 2025-05-29 05:44:09,848 | INFO     | all workflow threads have been joined
[2025-05-28 22:44:10] 2025-05-29 05:44:09,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 22:44:10] 2025-05-29 05:44:09,848 | INFO     | traces error code: 0
[2025-05-28 22:44:10] 2025-05-29 05:44:09,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 22:44:10] 2025-05-29 05:44:09,976 [wrapper] ==== pilot stdout END ====
[2025-05-28 22:44:10] 2025-05-29 05:44:09,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 22:44:10] 2025-05-29 05:44:10,003 [wrapper] pilotpid: 3211779
[2025-05-28 22:44:10] 2025-05-29 05:44:10,009 [wrapper] Pilot exit status: 0
[2025-05-28 22:44:10] 2025-05-29 05:44:10,056 [wrapper] pandaids: 6669134732
[2025-05-28 22:44:10] 2025-05-29 05:44:10,087 [wrapper] cleanup supervisor_pilot 3211785 3211780
[2025-05-28 22:44:10] 2025-05-29 05:44:10,090 [wrapper] Test setup, not cleaning
[2025-05-28 22:44:10] 2025-05-29 05:44:10,092 [wrapper] apfmon messages muted
[2025-05-28 22:44:10] 2025-05-29 05:44:10,094 [wrapper] ==== wrapper stdout END ====
[2025-05-28 22:44:10] 2025-05-29 05:44:10,095 [wrapper] ==== wrapper stderr END ====
[2025-05-28 22:44:10]  *** Error codes and diagnostics ***
[2025-05-28 22:44:10]     "exeErrorCode": 65,
[2025-05-28 22:44:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-28 22:44:10]     "pilotErrorCode": 1305,
[2025-05-28 22:44:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-28 22:44:10]  *** Listing of results directory ***
[2025-05-28 22:44:10] total 223292
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc    495897 May 28 19:31 pilot3.tar.gz
[2025-05-28 22:44:10] -rwx------. 1 boinc boinc     37140 May 28 19:35 runpilot2-wrapper.sh
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc      5111 May 28 19:35 queuedata.json
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc       100 May 28 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 22:44:10] -rwxr-xr-x. 1 boinc boinc      7986 May 28 22:40 run_atlas
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc       105 May 28 22:40 job.xml
[2025-05-28 22:44:10] -rw-r--r--. 2 boinc boinc 224614589 May 28 22:40 EVNT.44871834._003646.pool.root.1
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc      6602 May 28 22:40 init_data.xml
[2025-05-28 22:44:10] -rw-r--r--. 2 boinc boinc     15093 May 28 22:40 start_atlas.sh
[2025-05-28 22:44:10] drwxrwx--x. 2 boinc boinc      4096 May 28 22:40 shared
[2025-05-28 22:44:10] -rw-r--r--. 2 boinc boinc    508879 May 28 22:40 input.tar.gz
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc         0 May 28 22:40 boinc_lockfile
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc      2559 May 28 22:40 pandaJob.out
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc    993415 May 28 22:40 agis_schedconf.cvmfs.json
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc   1603667 May 28 22:40 agis_ddmendpoints.agis.ALL.json
[2025-05-28 22:44:10] drwx------. 4 boinc boinc      4096 May 28 22:40 pilot3
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc       522 May 28 22:41 boinc_task_state.xml
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc       980 May 28 22:41 memory_monitor_summary.json
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc     20650 May 28 22:41 log.44871837._093808.job.log.tgz.1
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc        95 May 28 22:43 pilot_heartbeat.json
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc      8355 May 28 22:43 heartbeat.json
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc      8192 May 28 22:44 boinc_mmap_file
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc        22 May 28 22:44 wrapper_checkpoint.txt
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc      5055 May 28 22:44 pilotlog.txt
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc     76478 May 28 22:44 log.44871837._093808.job.log.1
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc       188 May 28 22:44 output.list
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc       620 May 28 22:44 runtime_log
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc    112640 May 28 22:44 result.tar.gz
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc       645 May 28 22:44 Y0AODmeIie7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUUUKDm8KmWIn.diag
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc      8484 May 28 22:44 runtime_log.err
[2025-05-28 22:44:10] -rw-r--r--. 1 boinc boinc     21781 May 28 22:44 stderr.txt
[2025-05-28 22:44:10] No HITS result produced
[2025-05-28 22:44:10]  *** Contents of shared directory: ***
[2025-05-28 22:44:10] total 219984
[2025-05-28 22:44:10] -rw-r--r--. 2 boinc boinc 224614589 May 28 22:40 ATLAS.root_0
[2025-05-28 22:44:10] -rw-r--r--. 2 boinc boinc     15093 May 28 22:40 start_atlas.sh
[2025-05-28 22:44:10] -rw-r--r--. 2 boinc boinc    508879 May 28 22:40 input.tar.gz
[2025-05-28 22:44:10] -rw-------. 1 boinc boinc    112640 May 28 22:44 result.tar.gz
22:44:12 (3208224): run_atlas exited; CPU time 22.661797
22:44:12 (3208224): called boinc_finish(0)

</stderr_txt>
]]>

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