Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:12:10 (29802): wrapper (7.7.26015): starting
15:12:10 (29802): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 15:12:10] Arguments: --nthreads 8
[2025-05-29 15:12:10] Threads: 8
[2025-05-29 15:12:10] Checking for CVMFS
[2025-05-29 15:12:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 15:12:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 15:12:11] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 15:12:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 15:12:12] 2.11.2.0 27995 24630 93656 146562 0 209 23293927 25165825 4588 130560 0 13451113 99.814 14607089 1762 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 15:12:12] CVMFS is ok
[2025-05-29 15:12:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 15:12:12] Checking for apptainer binary...
[2025-05-29 15:12:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 15:12:12] Running /usr/bin/apptainer --version
[2025-05-29 15:12:12] apptainer version 1.3.2-1.el7
[2025-05-29 15:12:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 15:12:18] cg-vwn460.simple-grid.lan
[2025-05-29 15:12:18] apptainer works
[2025-05-29 15:12:18] Set ATHENA_PROC_NUMBER=8
[2025-05-29 15:12:18] Set ATHENA_CORE_NUMBER=8
[2025-05-29 15:12:18] Starting ATLAS job with PandaID=6668863098
[2025-05-29 15:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 20:20:10]  *** The last 200 lines of the pilot log: ***
[2025-05-29 20:20:10] 2025-05-29 18:13:39,086 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 20:20:10] 2025-05-29 18:13:39,086 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 20:20:10] 2025-05-29 18:13:39,086 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 20:20:10] 2025-05-29 18:13:39,086 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 20:20:10] 2025-05-29 18:13:39,091 | INFO     | fitting pss+swap vs Time
[2025-05-29 20:20:10] 2025-05-29 18:13:39,092 | INFO     | sum of square deviations: 7178069470.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,095 | INFO     | sum of deviations: 114902341339.99997
[2025-05-29 20:20:10] 2025-05-29 18:13:39,095 | INFO     | mean x: 1748533681.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,095 | INFO     | mean y: 2467320.5894736843
[2025-05-29 20:20:10] 2025-05-29 18:13:39,095 | INFO     | -- intersect: -27987038032.96468
[2025-05-29 20:20:10] 2025-05-29 18:13:39,095 | INFO     | intersect: -27987038032.96468
[2025-05-29 20:20:10] 2025-05-29 18:13:39,096 | INFO     | chi2: 7.022534510422616
[2025-05-29 20:20:10] 2025-05-29 18:13:39,096 | INFO     | sum of square deviations: 6806862510.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,098 | INFO     | sum of deviations: 112983424354.5
[2025-05-29 20:20:10] 2025-05-29 18:13:39,099 | INFO     | mean x: 1748533528.5
[2025-05-29 20:20:10] 2025-05-29 18:13:39,099 | INFO     | mean y: 2466532.2678571427
[2025-05-29 20:20:10] 2025-05-29 18:13:39,099 | INFO     | -- intersect: -29020494539.49716
[2025-05-29 20:20:10] 2025-05-29 18:13:39,099 | INFO     | intersect: -29020494539.49716
[2025-05-29 20:20:10] 2025-05-29 18:13:39,099 | INFO     | chi2: 7.03225883562385
[2025-05-29 20:20:10] 2025-05-29 18:13:39,099 | INFO     | current chi2=7.03225883562385 (change=-0.13847315647650724 %)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,100 | INFO     | right removable region: 279
[2025-05-29 20:20:10] 2025-05-29 18:13:39,100 | INFO     | sum of square deviations: 6806862510.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,102 | INFO     | sum of deviations: 14741045401.99998
[2025-05-29 20:20:10] 2025-05-29 18:13:39,103 | INFO     | mean x: 1748533833.5
[2025-05-29 20:20:10] 2025-05-29 18:13:39,103 | INFO     | mean y: 2508442.9857142856
[2025-05-29 20:20:10] 2025-05-29 18:13:39,103 | INFO     | -- intersect: -3784143129.4075956
[2025-05-29 20:20:10] 2025-05-29 18:13:39,103 | INFO     | intersect: -3784143129.4075956
[2025-05-29 20:20:10] 2025-05-29 18:13:39,103 | INFO     | chi2: 2.0998560776226927
[2025-05-29 20:20:10] 2025-05-29 18:13:39,103 | INFO     | current chi2=2.0998560776226927 (change=70.09831600676145 %)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,104 | INFO     | sum of square deviations: 6448679050.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,106 | INFO     | sum of deviations: -44959461106.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,107 | INFO     | mean x: 1748533986.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,107 | INFO     | mean y: 2533774.9345454546
[2025-05-29 20:20:10] 2025-05-29 18:13:39,107 | INFO     | -- intersect: 12193114997.314678
[2025-05-29 20:20:10] 2025-05-29 18:13:39,107 | INFO     | intersect: 12193114997.314678
[2025-05-29 20:20:10] 2025-05-29 18:13:39,107 | INFO     | chi2: 0.24174454718283744
[2025-05-29 20:20:10] 2025-05-29 18:13:39,107 | INFO     | current chi2=0.24174454718283744 (change=88.48756589753887 %)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,108 | INFO     | sum of square deviations: 6103286527.5
[2025-05-29 20:20:10] 2025-05-29 18:13:39,110 | INFO     | sum of deviations: -49143560113.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,110 | INFO     | mean x: 1748534138.5
[2025-05-29 20:20:10] 2025-05-29 18:13:39,110 | INFO     | mean y: 2535596.725925926
[2025-05-29 20:20:10] 2025-05-29 18:13:39,111 | INFO     | -- intersect: 14081702969.555353
[2025-05-29 20:20:10] 2025-05-29 18:13:39,111 | INFO     | intersect: 14081702969.555353
[2025-05-29 20:20:10] 2025-05-29 18:13:39,111 | INFO     | chi2: 0.20409971366208182
[2025-05-29 20:20:10] 2025-05-29 18:13:39,111 | INFO     | current chi2=0.20409971366208182 (change=15.572154143474389 %)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,111 | INFO     | left removable region: 30
[2025-05-29 20:20:10] 2025-05-29 18:13:39,112 | INFO     | sum of square deviations: 4787066500.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,114 | INFO     | sum of deviations: -22400700721.999996
[2025-05-29 20:20:10] 2025-05-29 18:13:39,114 | INFO     | mean x: 1748534413.0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,114 | INFO     | mean y: 2523360.0240963856
[2025-05-29 20:20:10] 2025-05-29 18:13:39,114 | INFO     | -- intersect: 8184652454.685919
[2025-05-29 20:20:10] 2025-05-29 18:13:39,114 | INFO     | intersect: 8184652454.685919
[2025-05-29 20:20:10] 2025-05-29 18:13:39,115 | INFO     | chi2: 0.1414297892408318
[2025-05-29 20:20:10] 2025-05-29 18:13:39,115 | INFO     | -- intersect: 8184652454.685919
[2025-05-29 20:20:10] 2025-05-29 18:13:39,115 | INFO     | current memory leak: -4.68 B/s (using 249 data points, chi2=0.14)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | ..............................
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | . Timing measurements:
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | . get job = 0 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | . initial setup = 8 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | . payload setup = 170 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | . stage-in = 0 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,116 | INFO     | . payload execution = 17517 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,117 | INFO     | . stage-out = 2 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,117 | INFO     | . log creation = 0 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,117 | INFO     | ..............................
[2025-05-29 20:20:10] 2025-05-29 18:13:39,232 | INFO     | 
[2025-05-29 20:20:10] 2025-05-29 18:13:39,232 | INFO     | job summary report
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | --------------------------------------------------
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | PanDA job id: 6668863098
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | task id: 44871837
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | errors: (none)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | pilot state: finished 
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | transexitcode: 0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | exeerrorcode: 0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | exeerrordiag: 
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | exitcode: 0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | exitmsg: OK
[2025-05-29 20:20:10] 2025-05-29 18:13:39,233 | INFO     | cpuconsumptiontime: 65445 s
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | nevents: 400
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | neventsw: 0
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | pid: 14036
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | pgrp: 14036
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | corecount: 8
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | event service: False
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 23: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 66: 2405558, 76: 2405586, 79: 2405848, 87: 2405904, 17692: 2437287
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | --------------------------------------------------
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | 
[2025-05-29 20:20:10] 2025-05-29 18:13:39,234 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 20:20:10] 2025-05-29 18:13:39,489 | INFO     | job 6668863098 has completed (purged errors)
[2025-05-29 20:20:10] 2025-05-29 18:13:39,489 | INFO     | overall cleanup function is called
[2025-05-29 20:20:10] 2025-05-29 18:13:40,498 | INFO     | --- collectZombieJob: --- 10, [14036]
[2025-05-29 20:20:10] 2025-05-29 18:13:40,498 | INFO     | zombie collector waiting for pid 14036
[2025-05-29 20:20:10] 2025-05-29 18:13:40,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 20:20:10] 2025-05-29 18:13:40,498 | INFO     | collected zombie processes
[2025-05-29 20:20:10] 2025-05-29 18:13:40,498 | INFO     | will attempt to kill all subprocesses of pid=14036
[2025-05-29 20:20:10] 2025-05-29 18:13:40,614 | INFO     | process IDs to be killed: [14036] (in reverse order)
[2025-05-29 20:20:10] 2025-05-29 18:13:41,199 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 20:20:10] 2025-05-29 18:13:41,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 20:20:10] 2025-05-29 18:13:41,202 | INFO     | did not find any defunct processes belonging to 14036
[2025-05-29 20:20:10] 2025-05-29 18:13:41,205 | INFO     | did not find any defunct processes belonging to 14036
[2025-05-29 20:20:10] 2025-05-29 18:13:41,206 | INFO     | ready for new job
[2025-05-29 20:20:10] 2025-05-29 18:13:41,206 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 20:20:10] 2025-05-29 18:13:41,208 | INFO     | **************************************
[2025-05-29 20:20:10] 2025-05-29 18:13:41,208 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 20:20:10] 2025-05-29 18:13:41,208 | INFO     | **************************************
[2025-05-29 20:20:10] 2025-05-29 18:13:41,208 | INFO     | 
[2025-05-29 20:20:10] 2025-05-29 18:13:41,209 | INFO     | pilot is running in a VM
[2025-05-29 20:20:10] 2025-05-29 18:13:41,209 | INFO     | architecture information:
[2025-05-29 20:20:10] 2025-05-29 18:13:41,209 | INFO     | executing command: cat /etc/os-release
[2025-05-29 20:20:10] 2025-05-29 18:13:41,227 | INFO     | cat /etc/os-release:
[2025-05-29 20:20:10] NAME="CentOS Linux"
[2025-05-29 20:20:10] VERSION="7 (Core)"
[2025-05-29 20:20:10] ID="centos"
[2025-05-29 20:20:10] ID_LIKE="rhel fedora"
[2025-05-29 20:20:10] VERSION_ID="7"
[2025-05-29 20:20:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 20:20:10] ANSI_COLOR="0;31"
[2025-05-29 20:20:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 20:20:10] HOME_URL="https://www.centos.org/"
[2025-05-29 20:20:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 20:20:10] 
[2025-05-29 20:20:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 20:20:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 20:20:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 20:20:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 20:20:10] 
[2025-05-29 20:20:10] 2025-05-29 18:13:41,227 | INFO     | **************************************
[2025-05-29 20:20:10] 2025-05-29 18:13:41,731 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-05-29 20:20:10] 2025-05-29 18:13:41,931 | INFO     | sufficient remaining disk space (496227057664 B)
[2025-05-29 20:20:10] 2025-05-29 18:13:41,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 20:20:10] 2025-05-29 18:13:41,932 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 20:20:10] 2025-05-29 18:13:41,932 | INFO     | update_server=False
[2025-05-29 20:20:10] 2025-05-29 18:13:41,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 20:20:10] 2025-05-29 18:13:41,933 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 20:20:10] 2025-05-29 18:13:41,933 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 20:20:10] 2025-05-29 18:13:41,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 20:20:10] 2025-05-29 18:13:41,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 20:20:10] 2025-05-29 18:13:41,936 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 20:20:10] 2025-05-29 18:13:41,936 | INFO     | aborting loop
[2025-05-29 20:20:10] 2025-05-29 18:13:42,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 20:20:10] 2025-05-29 18:13:42,566 | INFO     | all data control threads have been joined
[2025-05-29 20:20:10] 2025-05-29 18:13:42,897 | INFO     | all payload control threads have been joined
[2025-05-29 20:20:10] 2025-05-29 18:13:42,938 | INFO     | [job] retrieve thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:42,942 | INFO     | [job] job monitor thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:42,958 | INFO     | [payload] failed_post thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:43,061 | INFO     | all job control threads have been joined
[2025-05-29 20:20:10] 2025-05-29 18:13:43,082 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:43,084 | INFO     | [job] validate thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:43,292 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:43,446 | INFO     | [data] copytool_in thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:43,572 | INFO     | [data] control thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:43,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 20:20:10] 2025-05-29 18:13:43,903 | INFO     | [payload] control thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:44,066 | INFO     | [payload] validate_post thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:44,067 | INFO     | [job] control thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:44,133 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:44,234 | INFO     | [data] copytool_out thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:44,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 20:20:10] 2025-05-29 18:13:45,259 | INFO     | [job] queue monitor thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:47,788 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:52,903 | INFO     | job.realtimelogging is not enabled
[2025-05-29 20:20:10] 2025-05-29 18:13:53,908 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 20:20:10] 2025-05-29 18:13:55,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340766750528)>', '<ExcThread(monitor, started 140340187092736)>']
[2025-05-29 20:20:10] 2025-05-29 18:13:56,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 20:20:10] 2025-05-29 18:13:56,016 | INFO     | [monitor] control thread has ended
[2025-05-29 20:20:10] 2025-05-29 18:14:00,774 | INFO     | all workflow threads have been joined
[2025-05-29 20:20:10] 2025-05-29 18:14:00,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 20:20:10] 2025-05-29 18:14:00,774 | INFO     | traces error code: 0
[2025-05-29 20:20:10] 2025-05-29 18:14:00,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 20:20:10] 2025-05-29 18:14:00,949 [wrapper] ==== pilot stdout END ====
[2025-05-29 20:20:10] 2025-05-29 18:14:01,001 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 20:20:10] 2025-05-29 18:14:01,019 [wrapper] pilotpid: 3413
[2025-05-29 20:20:10] 2025-05-29 18:14:01,034 [wrapper] Pilot exit status: 0
[2025-05-29 20:20:10] 2025-05-29 18:14:01,073 [wrapper] pandaids: 6668863098
[2025-05-29 20:20:10] 2025-05-29 18:14:01,121 [wrapper] cleanup supervisor_pilot  4000 3414
[2025-05-29 20:20:10] 2025-05-29 18:14:01,124 [wrapper] Test setup, not cleaning
[2025-05-29 20:20:10] 2025-05-29 18:14:01,241 [wrapper] apfmon messages muted
[2025-05-29 20:20:10] 2025-05-29 18:14:01,312 [wrapper] ==== wrapper stdout END ====
[2025-05-29 20:20:10] 2025-05-29 18:14:01,382 [wrapper] ==== wrapper stderr END ====
[2025-05-29 20:20:10]  *** Error codes and diagnostics ***
[2025-05-29 20:20:10]     "exeErrorCode": 0,
[2025-05-29 20:20:10]     "exeErrorDiag": "",
[2025-05-29 20:20:10]     "pilotErrorCode": 0,
[2025-05-29 20:20:10]     "pilotErrorDiag": "",
[2025-05-29 20:20:10]  *** Listing of results directory ***
[2025-05-29 20:20:10] total 424768
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc    495897 May 28 21:50 pilot3.tar.gz
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc      5111 May 28 21:59 queuedata.json
[2025-05-29 20:20:10] -rwx------. 1 boinc boinc     37140 May 28 21:59 runpilot2-wrapper.sh
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc       100 May 29 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 20:20:10] -rwxr-xr-x. 1 boinc boinc      7986 May 29 15:12 run_atlas
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc       105 May 29 15:12 job.xml
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc      6372 May 29 15:12 init_data.xml
[2025-05-29 20:20:10] -rw-r--r--. 2 boinc boinc 223055262 May 29 15:12 EVNT.44871834._003494.pool.root.1
[2025-05-29 20:20:10] -rw-r--r--. 2 boinc boinc     15093 May 29 15:12 start_atlas.sh
[2025-05-29 20:20:10] drwxrwx--x. 2 boinc boinc        68 May 29 15:12 shared
[2025-05-29 20:20:10] -rw-r--r--. 2 boinc boinc    508880 May 29 15:12 input.tar.gz
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc         0 May 29 15:12 boinc_lockfile
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc      2559 May 29 15:12 pandaJob.out
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc    992820 May 29 15:15 agis_schedconf.cvmfs.json
[2025-05-29 20:20:10] drwx------. 4 boinc boinc      4096 May 29 15:15 pilot3
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc 204239850 May 29 20:12 HITS.44871837._089792.pool.root.1
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc       531 May 29 20:12 boinc_task_state.xml
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc      1019 May 29 20:13 memory_monitor_summary.json
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc   1603667 May 29 20:13 agis_ddmendpoints.agis.ALL.json
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc    405404 May 29 20:13 log.44871837._089792.job.log.tgz.1
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc        95 May 29 20:13 pilot_heartbeat.json
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc      7693 May 29 20:13 heartbeat.json
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc      4611 May 29 20:14 pilotlog.txt
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc   1515788 May 29 20:14 log.44871837._089792.job.log.1
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc       357 May 29 20:14 output.list
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc       620 May 29 20:14 runtime_log
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc   1935360 May 29 20:14 result.tar.gz
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc      8659 May 29 20:14 runtime_log.err
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc       657 May 29 20:14 GisKDmC7be7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1ycKDmTnvzam.diag
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc      8192 May 29 20:20 boinc_mmap_file
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc        28 May 29 20:20 wrapper_checkpoint.txt
[2025-05-29 20:20:10] -rw-r--r--. 1 boinc boinc     20511 May 29 20:20 stderr.txt
[2025-05-29 20:20:10] HITS file was successfully produced:
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc 204239850 May 29 20:12 shared/HITS.pool.root.1
[2025-05-29 20:20:10]  *** Contents of shared directory: ***
[2025-05-29 20:20:10] total 419692
[2025-05-29 20:20:10] -rw-r--r--. 2 boinc boinc 223055262 May 29 15:12 ATLAS.root_0
[2025-05-29 20:20:10] -rw-r--r--. 2 boinc boinc     15093 May 29 15:12 start_atlas.sh
[2025-05-29 20:20:10] -rw-r--r--. 2 boinc boinc    508880 May 29 15:12 input.tar.gz
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc 204239850 May 29 20:12 HITS.pool.root.1
[2025-05-29 20:20:10] -rw-------. 1 boinc boinc   1935360 May 29 20:14 result.tar.gz
20:20:12 (29802): run_atlas exited; CPU time 65671.394671
20:20:12 (29802): called boinc_finish(0)

</stderr_txt>
]]>

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