Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:26:25 (2671798): wrapper (7.7.26015): starting
22:26:25 (2671798): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 22:26:25] Arguments: --nthreads 4
[2025-06-04 22:26:25] Threads: 4
[2025-06-04 22:26:25] Checking for CVMFS
[2025-06-04 22:26:25] No cvmfs_config command found, will try listing directly
[2025-06-04 22:26:25] CVMFS is ok
[2025-06-04 22:26:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 22:26:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 22:26:25] Further information can be found at the LHC@home message board.
[2025-06-04 22:26:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:26:25] Checking for apptainer binary...
[2025-06-04 22:26:25] which: no apptainer in ((null))
[2025-06-04 22:26:25] apptainer is not installed, using version from CVMFS
[2025-06-04 22:26:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:26:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-04 22:26:25] apptainer works
[2025-06-04 22:26:25] Set ATHENA_PROC_NUMBER=4
[2025-06-04 22:26:25] Set ATHENA_CORE_NUMBER=4
[2025-06-04 22:26:25] Starting ATLAS job with PandaID=6668689311
[2025-06-04 22:26:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:36:17]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:36:17] 2025-06-05 00:32:30,853 | INFO     | sum of deviations: -21323664195.500008
[2025-06-05 02:36:17] 2025-06-05 00:32:30,853 | INFO     | mean x: 1749076170.5
[2025-06-05 02:36:17] 2025-06-05 00:32:30,854 | INFO     | mean y: 2355799.491735537
[2025-06-05 02:36:17] 2025-06-05 00:32:30,854 | INFO     | sufficient remaining disk space (1649921753088 B)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,854 | INFO     | -- intersect: 8489341129.705253
[2025-06-05 02:36:17] 2025-06-05 00:32:30,855 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,855 | INFO     | intersect: 8489341129.705253
[2025-06-05 02:36:17] 2025-06-05 00:32:30,856 | INFO     | chi2: 2.274061073744768
[2025-06-05 02:36:17] 2025-06-05 00:32:30,856 | INFO     | sum of square deviations: 4127772278.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,858 | INFO     | sum of deviations: -6828712831.999999
[2025-06-05 02:36:17] 2025-06-05 00:32:30,858 | INFO     | mean x: 1749076018.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,858 | INFO     | mean y: 2363951.1223628693
[2025-06-05 02:36:17] 2025-06-05 00:32:30,858 | INFO     | -- intersect: 2895919371.298588
[2025-06-05 02:36:17] 2025-06-05 00:32:30,859 | INFO     | intersect: 2895919371.298588
[2025-06-05 02:36:17] 2025-06-05 00:32:30,859 | INFO     | chi2: 1.6170393418277025
[2025-06-05 02:36:17] 2025-06-05 00:32:30,859 | INFO     | current chi2=1.6170393418277025 (change=28.89200028542449 %)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,860 | INFO     | sum of square deviations: 3871990738.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,862 | INFO     | sum of deviations: -6507992887.999999
[2025-06-05 02:36:17] 2025-06-05 00:32:30,862 | INFO     | mean x: 1749075865.5
[2025-06-05 02:36:17] 2025-06-05 00:32:30,862 | INFO     | mean y: 2364142.379310345
[2025-06-05 02:36:17] 2025-06-05 00:32:30,862 | INFO     | -- intersect: 2942188657.333107
[2025-06-05 02:36:17] 2025-06-05 00:32:30,863 | INFO     | intersect: 2942188657.333107
[2025-06-05 02:36:17] 2025-06-05 00:32:30,863 | INFO     | chi2: 1.6168677526736108
[2025-06-05 02:36:17] 2025-06-05 00:32:30,863 | INFO     | current chi2=1.6168677526736108 (change=0.010611315980581683 %)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,863 | INFO     | right removable region: 231
[2025-06-05 02:36:17] 2025-06-05 00:32:30,864 | INFO     | sum of square deviations: 4127772278.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,866 | INFO     | sum of deviations: -56043589875.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,866 | INFO     | mean x: 1749076323.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,866 | INFO     | mean y: 2375453.2025316455
[2025-06-05 02:36:17] 2025-06-05 00:32:30,866 | INFO     | -- intersect: 23749934549.117615
[2025-06-05 02:36:17] 2025-06-05 00:32:30,866 | INFO     | intersect: 23749934549.117615
[2025-06-05 02:36:17] 2025-06-05 00:32:30,867 | INFO     | chi2: 0.8116881809212422
[2025-06-05 02:36:17] 2025-06-05 00:32:30,867 | INFO     | current chi2=0.8116881809212422 (change=64.30666747289203 %)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,868 | INFO     | sum of square deviations: 3871990738.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,870 | INFO     | sum of deviations: -49361441255.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,871 | INFO     | size of work directory /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6668689311: 3242578 B (within 2537553920 B limit)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,871 | INFO     | mean x: 1749076475.5
[2025-06-05 02:36:17] 2025-06-05 00:32:30,871 | INFO     | pfn file=/scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6668689311/HITS.44871837._087449.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,871 | INFO     | mean y: 2371467.9051724137
[2025-06-05 02:36:17] 2025-06-05 00:32:30,871 | INFO     | total size of present files: 0 B (workdir size: 3242578 B)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,872 | INFO     | -- intersect: 22300187123.448643
[2025-06-05 02:36:17] 2025-06-05 00:32:30,872 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6668689311/HITS.44871837._087449.pool.root.1 since it does not exist
[2025-06-05 02:36:17] 2025-06-05 00:32:30,872 | INFO     | intersect: 22300187123.448643
[2025-06-05 02:36:17] 2025-06-05 00:32:30,873 | INFO     | chi2: 0.8025500159492771
[2025-06-05 02:36:17] 2025-06-05 00:32:30,873 | INFO     | current chi2=0.8025500159492771 (change=1.1258221059217002 %)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,873 | INFO     | left removable region: 20
[2025-06-05 02:36:17] 2025-06-05 00:32:30,874 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,875 | INFO     | sum of deviations: -20587070743.00001
[2025-06-05 02:36:17] 2025-06-05 00:32:30,875 | INFO     | mean x: 1749076445.0
[2025-06-05 02:36:17] 2025-06-05 00:32:30,876 | INFO     | mean y: 2371767.1374407583
[2025-06-05 02:36:17] 2025-06-05 00:32:30,876 | INFO     | -- intersect: 12364331171.824274
[2025-06-05 02:36:17] 2025-06-05 00:32:30,876 | INFO     | intersect: 12364331171.824274
[2025-06-05 02:36:17] 2025-06-05 00:32:30,877 | INFO     | chi2: 0.08005320767077181
[2025-06-05 02:36:17] 2025-06-05 00:32:30,877 | INFO     | -- intersect: 12364331171.824274
[2025-06-05 02:36:17] 2025-06-05 00:32:30,877 | INFO     | current memory leak: -7.07 B/s (using 211 data points, chi2=0.08)
[2025-06-05 02:36:17] 2025-06-05 00:32:30,878 | INFO     | ..............................
[2025-06-05 02:36:17] 2025-06-05 00:32:30,878 | INFO     | . Timing measurements:
[2025-06-05 02:36:17] 2025-06-05 00:32:30,878 | INFO     | . get job = 0 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,879 | INFO     | . initial setup = 1 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,879 | INFO     | . payload setup = 6 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,879 | INFO     | . stage-in = 0 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,879 | INFO     | . payload execution = 14725 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,879 | INFO     | . stage-out = 1 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,879 | INFO     | . log creation = 0 s
[2025-06-05 02:36:17] 2025-06-05 00:32:30,880 | INFO     | ..............................
[2025-06-05 02:36:17] 2025-06-05 00:32:31,005 | INFO     | 
[2025-06-05 02:36:17] 2025-06-05 00:32:31,006 | INFO     | job summary report
[2025-06-05 02:36:17] 2025-06-05 00:32:31,006 | INFO     | --------------------------------------------------
[2025-06-05 02:36:17] 2025-06-05 00:32:31,006 | INFO     | PanDA job id: 6668689311
[2025-06-05 02:36:17] 2025-06-05 00:32:31,006 | INFO     | task id: 44871837
[2025-06-05 02:36:17] 2025-06-05 00:32:31,006 | INFO     | errors: (none)
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | pilot state: finished 
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | transexitcode: 0
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | exeerrorcode: 0
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | exeerrordiag: 
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | exitcode: 0
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | exitmsg: OK
[2025-06-05 02:36:17] 2025-06-05 00:32:31,007 | INFO     | cpuconsumptiontime: 56455 s
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | nevents: 400
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | neventsw: 0
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | pid: 2682335
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | pgrp: 2682335
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | corecount: 4
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | event service: False
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | sizes: {0: 2397176, 1: 2397431, 5: 2397637, 12: 2397693, 14736: 2428336, 14738: 2437483, 14742: 2437625}
[2025-06-05 02:36:17] 2025-06-05 00:32:31,008 | INFO     | --------------------------------------------------
[2025-06-05 02:36:17] 2025-06-05 00:32:31,009 | INFO     | 
[2025-06-05 02:36:17] 2025-06-05 00:32:31,009 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-05 02:36:17] 2025-06-05 00:32:31,030 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,030 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,030 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,031 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,033 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:36:17] 2025-06-05 00:32:31,033 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,033 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:36:17] 2025-06-05 00:32:31,033 | INFO     | job 6668689311 has completed (purged errors)
[2025-06-05 02:36:17] 2025-06-05 00:32:31,033 | INFO     | overall cleanup function is called
[2025-06-05 02:36:17] 2025-06-05 00:32:31,347 | INFO     | number of running child processes to parent process 2682335: 1
[2025-06-05 02:36:17] 2025-06-05 00:32:31,348 | INFO     | maximum number of monitored processes: 6
[2025-06-05 02:36:17] 2025-06-05 00:32:31,348 | INFO     | aborting job monitoring since job object (job id=6668689311) has expired
[2025-06-05 02:36:17] 2025-06-05 00:32:32,042 | INFO     | --- collectZombieJob: --- 10, [2682335]
[2025-06-05 02:36:17] 2025-06-05 00:32:32,043 | INFO     | zombie collector waiting for pid 2682335
[2025-06-05 02:36:17] 2025-06-05 00:32:32,043 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:36:17] 2025-06-05 00:32:32,043 | INFO     | collected zombie processes
[2025-06-05 02:36:17] 2025-06-05 00:32:32,043 | INFO     | will attempt to kill all subprocesses of pid=2682335
[2025-06-05 02:36:17] 2025-06-05 00:32:32,352 | INFO     | process IDs to be killed: [2682335] (in reverse order)
[2025-06-05 02:36:17] 2025-06-05 00:32:32,435 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:36:17] 2025-06-05 00:32:32,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:36:17] 2025-06-05 00:32:32,443 | INFO     | did not find any defunct processes belonging to 2682335
[2025-06-05 02:36:17] 2025-06-05 00:32:32,450 | INFO     | did not find any defunct processes belonging to 2682335
[2025-06-05 02:36:17] 2025-06-05 00:32:32,450 | INFO     | ready for new job
[2025-06-05 02:36:17] 2025-06-05 00:32:32,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:36:17] 2025-06-05 00:32:32,452 | INFO     | **************************************
[2025-06-05 02:36:17] 2025-06-05 00:32:32,452 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:36:17] 2025-06-05 00:32:32,453 | INFO     | **************************************
[2025-06-05 02:36:17] 2025-06-05 00:32:32,453 | INFO     | 
[2025-06-05 02:36:17] 2025-06-05 00:32:32,455 | INFO     | architecture information:
[2025-06-05 02:36:17] 2025-06-05 00:32:32,455 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:36:17] 2025-06-05 00:32:32,469 | INFO     | cat /etc/os-release:
[2025-06-05 02:36:17] NAME="CentOS Linux"
[2025-06-05 02:36:17] VERSION="7 (Core)"
[2025-06-05 02:36:17] ID="centos"
[2025-06-05 02:36:17] ID_LIKE="rhel fedora"
[2025-06-05 02:36:17] VERSION_ID="7"
[2025-06-05 02:36:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:36:17] ANSI_COLOR="0;31"
[2025-06-05 02:36:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:36:17] HOME_URL="https://www.centos.org/"
[2025-06-05 02:36:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:36:17] 
[2025-06-05 02:36:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:36:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:36:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:36:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:36:17] 
[2025-06-05 02:36:17] 2025-06-05 00:32:32,469 | INFO     | **************************************
[2025-06-05 02:36:17] 2025-06-05 00:32:32,972 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-05 02:36:17] 2025-06-05 00:32:32,990 | INFO     | sufficient remaining disk space (1649925947392 B)
[2025-06-05 02:36:17] 2025-06-05 00:32:32,990 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:36:17] 2025-06-05 00:32:32,990 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:36:17] 2025-06-05 00:32:32,990 | INFO     | update_server=False
[2025-06-05 02:36:17] 2025-06-05 00:32:32,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:36:17] 2025-06-05 00:32:32,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:36:17] 2025-06-05 00:32:32,991 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:36:17] 2025-06-05 00:32:32,991 | INFO     | aborting loop
[2025-06-05 02:36:17] 2025-06-05 00:32:32,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:36:17] 2025-06-05 00:32:32,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:36:17] 2025-06-05 00:32:33,555 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:36:17] 2025-06-05 00:32:33,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:36:17] 2025-06-05 00:32:33,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:36:17] 2025-06-05 00:32:33,587 | INFO     | all data control threads have been joined
[2025-06-05 02:36:17] 2025-06-05 00:32:33,616 | INFO     | all job control threads have been joined
[2025-06-05 02:36:17] 2025-06-05 00:32:33,996 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:33,996 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:33,997 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,081 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,113 | INFO     | all payload control threads have been joined
[2025-06-05 02:36:17] 2025-06-05 00:32:34,150 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,590 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,592 | INFO     | [data] control thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,621 | INFO     | [job] control thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,812 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:34,997 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:35,085 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:35,118 | INFO     | [payload] control thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:35,232 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:35,260 | INFO     | [job] validate thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:35,594 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:36,997 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:36:17] 2025-06-05 00:32:37,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23052835092288)>', '<ExcThread(monitor, started 23052597298944)>']
[2025-06-05 02:36:17] 2025-06-05 00:32:37,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:36:17] 2025-06-05 00:32:37,572 | INFO     | [monitor] control thread has ended
[2025-06-05 02:36:17] 2025-06-05 00:32:42,134 | INFO     | all workflow threads have been joined
[2025-06-05 02:36:17] 2025-06-05 00:32:42,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:36:17] 2025-06-05 00:32:42,135 | INFO     | traces error code: 0
[2025-06-05 02:36:17] 2025-06-05 00:32:42,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:36:17] 2025-06-05 00:32:42,275 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:36:17] 2025-06-05 00:32:42,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:36:17] 2025-06-05 00:32:42,280 [wrapper] pilotpid: 2675376
[2025-06-05 02:36:17] 2025-06-05 00:32:42,283 [wrapper] Pilot exit status: 0
[2025-06-05 02:36:17] 2025-06-05 00:32:42,294 [wrapper] pandaids: 6668689311
[2025-06-05 02:36:17] 2025-06-05 00:32:42,351 [wrapper] cleanup supervisor_pilot 2924576 2675377
[2025-06-05 02:36:17] 2025-06-05 00:32:42,353 [wrapper] Test setup, not cleaning
[2025-06-05 02:36:17] 2025-06-05 00:32:42,356 [wrapper] apfmon messages muted
[2025-06-05 02:36:17] 2025-06-05 00:32:42,359 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:36:17] 2025-06-05 00:32:42,361 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:36:17]  *** Error codes and diagnostics ***
[2025-06-05 02:36:17]     "exeErrorCode": 0,
[2025-06-05 02:36:17]     "exeErrorDiag": "",
[2025-06-05 02:36:17]     "pilotErrorCode": 0,
[2025-06-05 02:36:17]     "pilotErrorDiag": "",
[2025-06-05 02:36:17]  *** Listing of results directory ***
[2025-06-05 02:36:17] total 422632
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc    495897 May 28 18:47 pilot3.tar.gz
[2025-06-05 02:36:17] -rwx------ 1 boinc boinc     37140 May 28 18:51 runpilot2-wrapper.sh
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc      5111 May 28 18:51 queuedata.json
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc       100 Jun  4 22:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:36:17] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 22:26 run_atlas
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc       105 Jun  4 22:26 job.xml
[2025-06-05 02:36:17] -rw-r--r-- 2 boinc boinc 225181993 Jun  4 22:26 EVNT.44871834._003406.pool.root.1
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc      6419 Jun  4 22:26 init_data.xml
[2025-06-05 02:36:17] drwxrwx--x 2 boinc boinc      4096 Jun  4 22:26 shared
[2025-06-05 02:36:17] -rw-r--r-- 2 boinc boinc    508877 Jun  4 22:26 input.tar.gz
[2025-06-05 02:36:17] -rw-r--r-- 2 boinc boinc     15093 Jun  4 22:26 start_atlas.sh
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc         0 Jun  4 22:26 boinc_lockfile
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc      2559 Jun  4 22:26 pandaJob.out
[2025-06-05 02:36:17] -rw------- 1 boinc boinc    987032 Jun  4 22:26 agis_schedconf.cvmfs.json
[2025-06-05 02:36:17] drwx------ 4 boinc boinc      4096 Jun  4 22:26 pilot3
[2025-06-05 02:36:17] -rw------- 1 boinc boinc 200285796 Jun  5 02:31 HITS.44871837._087449.pool.root.1
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc       528 Jun  5 02:31 boinc_task_state.xml
[2025-06-05 02:36:17] -rw------- 1 boinc boinc      1037 Jun  5 02:32 memory_monitor_summary.json
[2025-06-05 02:36:17] -rw------- 1 boinc boinc   1598969 Jun  5 02:32 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:36:17] -rw------- 1 boinc boinc    358338 Jun  5 02:32 log.44871837._087449.job.log.tgz.1
[2025-06-05 02:36:17] -rw------- 1 boinc boinc      7730 Jun  5 02:32 heartbeat.json
[2025-06-05 02:36:17] -rw------- 1 boinc boinc        95 Jun  5 02:32 pilot_heartbeat.json
[2025-06-05 02:36:17] -rw------- 1 boinc boinc      4364 Jun  5 02:32 pilotlog.txt
[2025-06-05 02:36:17] -rw------- 1 boinc boinc   1380034 Jun  5 02:32 log.44871837._087449.job.log.1
[2025-06-05 02:36:17] -rw------- 1 boinc boinc       357 Jun  5 02:32 output.list
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc       620 Jun  5 02:32 runtime_log
[2025-06-05 02:36:17] -rw------- 1 boinc boinc   1761280 Jun  5 02:32 result.tar.gz
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc      9026 Jun  5 02:32 runtime_log.err
[2025-06-05 02:36:17] -rw------- 1 boinc boinc       665 Jun  5 02:32 NMpKDmQBZe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHecKDmyPxIum.diag
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc        27 Jun  5 02:35 wrapper_checkpoint.txt
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc      8192 Jun  5 02:36 boinc_mmap_file
[2025-06-05 02:36:17] -rw-r--r-- 1 boinc boinc     20971 Jun  5 02:36 stderr.txt
[2025-06-05 02:36:17] HITS file was successfully produced:
[2025-06-05 02:36:17] -rw------- 1 boinc boinc 200285796 Jun  5 02:31 shared/HITS.pool.root.1
[2025-06-05 02:36:17]  *** Contents of shared directory: ***
[2025-06-05 02:36:17] total 417740
[2025-06-05 02:36:17] -rw-r--r-- 2 boinc boinc 225181993 Jun  4 22:26 ATLAS.root_0
[2025-06-05 02:36:17] -rw-r--r-- 2 boinc boinc    508877 Jun  4 22:26 input.tar.gz
[2025-06-05 02:36:17] -rw-r--r-- 2 boinc boinc     15093 Jun  4 22:26 start_atlas.sh
[2025-06-05 02:36:17] -rw------- 1 boinc boinc 200285796 Jun  5 02:31 HITS.pool.root.1
[2025-06-05 02:36:17] -rw------- 1 boinc boinc   1761280 Jun  5 02:32 result.tar.gz
02:36:19 (2671798): run_atlas exited; CPU time 57045.033874
02:36:19 (2671798): called boinc_finish(0)

</stderr_txt>
]]>

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