Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:48:21 (1557367): wrapper (7.7.26015): starting
08:48:21 (1557367): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 08:48:21] Arguments: --nthreads 4
[2025-06-04 08:48:21] Threads: 4
[2025-06-04 08:48:21] Checking for CVMFS
[2025-06-04 08:48:21] No cvmfs_config command found, will try listing directly
[2025-06-04 08:48:21] CVMFS is ok
[2025-06-04 08:48:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:48:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:48:21] Further information can be found at the LHC@home message board.
[2025-06-04 08:48:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:48:21] Checking for apptainer binary...
[2025-06-04 08:48:21] which: no apptainer in ((null))
[2025-06-04 08:48:21] apptainer is not installed, using version from CVMFS
[2025-06-04 08:48:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:48:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-06-04 08:48:21] apptainer works
[2025-06-04 08:48:21] Set ATHENA_PROC_NUMBER=4
[2025-06-04 08:48:21] Set ATHENA_CORE_NUMBER=4
[2025-06-04 08:48:21] Starting ATLAS job with PandaID=6668849753
[2025-06-04 08:48:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:04:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:04:16] 2025-06-04 10:03:57,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:04:16] 2025-06-04 10:04:00,213 | INFO     | monitor loop #807: job 0:6668849753 is in state 'finished'
[2025-06-04 12:04:16] 2025-06-04 10:04:00,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,046 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:04:16] 2025-06-04 10:04:02,047 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6668849753/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,048 | INFO     | extracted standard info from prmon json
[2025-06-04 12:04:16] 2025-06-04 10:04:02,048 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:04:16] 2025-06-04 10:04:02,048 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:04:16] 2025-06-04 10:04:02,049 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:04:16] 2025-06-04 10:04:02,049 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:04:16] 2025-06-04 10:04:02,053 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:04:16] 2025-06-04 10:04:02,053 | INFO     | sum of square deviations: 2194675568.0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,055 | INFO     | sum of deviations: 22771967248.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,055 | INFO     | mean x: 1749025575.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,055 | INFO     | mean y: 2318479.609375
[2025-06-04 12:04:16] 2025-06-04 10:04:02,055 | INFO     | -- intersect: -18145581694.251247
[2025-06-04 12:04:16] 2025-06-04 10:04:02,055 | INFO     | intersect: -18145581694.251247
[2025-06-04 12:04:16] 2025-06-04 10:04:02,056 | INFO     | chi2: 1.5099070360864797
[2025-06-04 12:04:16] 2025-06-04 10:04:02,056 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,057 | INFO     | sum of deviations: 22090616677.000004
[2025-06-04 12:04:16] 2025-06-04 10:04:02,058 | INFO     | mean x: 1749025423.0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,058 | INFO     | mean y: 2317858.272727273
[2025-06-04 12:04:16] 2025-06-04 10:04:02,058 | INFO     | -- intersect: -19052865755.46205
[2025-06-04 12:04:16] 2025-06-04 10:04:02,058 | INFO     | intersect: -19052865755.46205
[2025-06-04 12:04:16] 2025-06-04 10:04:02,058 | INFO     | chi2: 1.5110238786497523
[2025-06-04 12:04:16] 2025-06-04 10:04:02,059 | INFO     | current chi2=1.5110238786497523 (change=-0.07396763751544204 %)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,059 | INFO     | right removable region: 186
[2025-06-04 12:04:16] 2025-06-04 10:04:02,059 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,060 | INFO     | sum of deviations: -4784043767.000001
[2025-06-04 12:04:16] 2025-06-04 10:04:02,060 | INFO     | mean x: 1749025728.0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,061 | INFO     | mean y: 2343327.2406417113
[2025-06-04 12:04:16] 2025-06-04 10:04:02,061 | INFO     | -- intersect: 4129020713.668055
[2025-06-04 12:04:16] 2025-06-04 10:04:02,061 | INFO     | intersect: 4129020713.668055
[2025-06-04 12:04:16] 2025-06-04 10:04:02,061 | INFO     | chi2: 0.020434061563654838
[2025-06-04 12:04:16] 2025-06-04 10:04:02,061 | INFO     | current chi2=0.020434061563654838 (change=98.6466675712289 %)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,062 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,063 | INFO     | sum of deviations: -4795726243.000001
[2025-06-04 12:04:16] 2025-06-04 10:04:02,063 | INFO     | mean x: 1749025880.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,063 | INFO     | mean y: 2343314.4395604394
[2025-06-04 12:04:16] 2025-06-04 10:04:02,063 | INFO     | -- intersect: 4489499055.1264925
[2025-06-04 12:04:16] 2025-06-04 10:04:02,063 | INFO     | intersect: 4489499055.1264925
[2025-06-04 12:04:16] 2025-06-04 10:04:02,063 | INFO     | chi2: 0.016610707285871888
[2025-06-04 12:04:16] 2025-06-04 10:04:02,064 | INFO     | current chi2=0.016610707285871888 (change=18.71069178231009 %)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,064 | INFO     | left removable region: 20
[2025-06-04 12:04:16] 2025-06-04 10:04:02,064 | INFO     | sum of square deviations: 1418361477.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,065 | INFO     | sum of deviations: -1769271419.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,065 | INFO     | mean x: 1749026002.5
[2025-06-04 12:04:16] 2025-06-04 10:04:02,065 | INFO     | mean y: 2340048.1626506024
[2025-06-04 12:04:16] 2025-06-04 10:04:02,065 | INFO     | -- intersect: 2184084100.9128323
[2025-06-04 12:04:16] 2025-06-04 10:04:02,066 | INFO     | intersect: 2184084100.9128323
[2025-06-04 12:04:16] 2025-06-04 10:04:02,066 | INFO     | chi2: 0.012610693570124815
[2025-06-04 12:04:16] 2025-06-04 10:04:02,066 | INFO     | -- intersect: 2184084100.9128323
[2025-06-04 12:04:16] 2025-06-04 10:04:02,066 | INFO     | current memory leak: -1.25 B/s (using 166 data points, chi2=0.01)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | ..............................
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . Timing measurements:
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . get job = 0 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . initial setup = 1 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . payload setup = 9 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . stage-in = 0 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . payload execution = 11686 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . stage-out = 1 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,067 | INFO     | . log creation = 0 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,068 | INFO     | ..............................
[2025-06-04 12:04:16] 2025-06-04 10:04:02,176 | INFO     | 
[2025-06-04 12:04:16] 2025-06-04 10:04:02,177 | INFO     | job summary report
[2025-06-04 12:04:16] 2025-06-04 10:04:02,177 | INFO     | --------------------------------------------------
[2025-06-04 12:04:16] 2025-06-04 10:04:02,177 | INFO     | PanDA job id: 6668849753
[2025-06-04 12:04:16] 2025-06-04 10:04:02,177 | INFO     | task id: 44871837
[2025-06-04 12:04:16] 2025-06-04 10:04:02,177 | INFO     | errors: (none)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | pilot state: finished 
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | transexitcode: 0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | exeerrorcode: 0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | exeerrordiag: 
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | exitcode: 0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | exitmsg: OK
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | cpuconsumptiontime: 44506 s
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | nevents: 400
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | neventsw: 0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | pid: 1574171
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | pgrp: 1574171
[2025-06-04 12:04:16] 2025-06-04 10:04:02,178 | INFO     | corecount: 4
[2025-06-04 12:04:16] 2025-06-04 10:04:02,179 | INFO     | event service: False
[2025-06-04 12:04:16] 2025-06-04 10:04:02,179 | INFO     | sizes: {0: 2405194, 7: 2405400, 11: 2405428, 11700: 2435124, 11701: 2444087, 11703: 2444143, 11709: 2444441}
[2025-06-04 12:04:16] 2025-06-04 10:04:02,179 | INFO     | --------------------------------------------------
[2025-06-04 12:04:16] 2025-06-04 10:04:02,179 | INFO     | 
[2025-06-04 12:04:16] 2025-06-04 10:04:02,179 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2025-06-04 12:04:16] 2025-06-04 10:04:02,214 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,214 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:04:16] 2025-06-04 10:04:02,216 | INFO     | job 6668849753 has completed (purged errors)
[2025-06-04 12:04:16] 2025-06-04 10:04:02,217 | INFO     | overall cleanup function is called
[2025-06-04 12:04:16] 2025-06-04 10:04:02,378 | INFO     | PID=1561461 has CPU usage=22.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 12:04:16] 2025-06-04 10:04:02,378 | INFO     | .. there are 14 such processes running
[2025-06-04 12:04:16] 2025-06-04 10:04:03,228 | INFO     | --- collectZombieJob: --- 10, [1574171]
[2025-06-04 12:04:16] 2025-06-04 10:04:03,228 | INFO     | zombie collector waiting for pid 1574171
[2025-06-04 12:04:16] 2025-06-04 10:04:03,229 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:04:16] 2025-06-04 10:04:03,229 | INFO     | collected zombie processes
[2025-06-04 12:04:16] 2025-06-04 10:04:03,229 | INFO     | will attempt to kill all subprocesses of pid=1574171
[2025-06-04 12:04:16] 2025-06-04 10:04:03,920 | INFO     | process IDs to be killed: [1574171] (in reverse order)
[2025-06-04 12:04:16] 2025-06-04 10:04:04,176 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:04:16] 2025-06-04 10:04:04,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:04:16] 2025-06-04 10:04:04,206 | INFO     | did not find any defunct processes belonging to 1574171
[2025-06-04 12:04:16] 2025-06-04 10:04:04,228 | INFO     | did not find any defunct processes belonging to 1574171
[2025-06-04 12:04:16] 2025-06-04 10:04:04,229 | INFO     | ready for new job
[2025-06-04 12:04:16] 2025-06-04 10:04:04,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:04:16] 2025-06-04 10:04:04,231 | INFO     | **************************************
[2025-06-04 12:04:16] 2025-06-04 10:04:04,231 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:04:16] 2025-06-04 10:04:04,231 | INFO     | **************************************
[2025-06-04 12:04:16] 2025-06-04 10:04:04,231 | INFO     | 
[2025-06-04 12:04:16] 2025-06-04 10:04:04,240 | INFO     | architecture information:
[2025-06-04 12:04:16] 2025-06-04 10:04:04,240 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:04:16] 2025-06-04 10:04:04,267 | INFO     | cat /etc/os-release:
[2025-06-04 12:04:16] NAME="CentOS Linux"
[2025-06-04 12:04:16] VERSION="7 (Core)"
[2025-06-04 12:04:16] ID="centos"
[2025-06-04 12:04:16] ID_LIKE="rhel fedora"
[2025-06-04 12:04:16] VERSION_ID="7"
[2025-06-04 12:04:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:04:16] ANSI_COLOR="0;31"
[2025-06-04 12:04:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:04:16] HOME_URL="https://www.centos.org/"
[2025-06-04 12:04:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:04:16] 
[2025-06-04 12:04:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:04:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:04:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:04:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:04:16] 
[2025-06-04 12:04:16] 2025-06-04 10:04:04,267 | INFO     | **************************************
[2025-06-04 12:04:16] 2025-06-04 10:04:04,770 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2025-06-04 12:04:16] 2025-06-04 10:04:04,798 | INFO     | sufficient remaining disk space (3245208502272 B)
[2025-06-04 12:04:16] 2025-06-04 10:04:04,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:04:16] 2025-06-04 10:04:04,798 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:04:16] 2025-06-04 10:04:04,798 | INFO     | update_server=False
[2025-06-04 12:04:16] 2025-06-04 10:04:04,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:04:16] 2025-06-04 10:04:04,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:04:16] 2025-06-04 10:04:04,799 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:04:16] 2025-06-04 10:04:04,800 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:04:16] 2025-06-04 10:04:04,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:04:16] 2025-06-04 10:04:04,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:04:16] 2025-06-04 10:04:05,223 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 12:04:16] 2025-06-04 10:04:05,223 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 12:04:16] 2025-06-04 10:04:05,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:04:16] 2025-06-04 10:04:05,223 | INFO     | will abort loop
[2025-06-04 12:04:16] 2025-06-04 10:04:05,353 | INFO     | all data control threads have been joined
[2025-06-04 12:04:16] 2025-06-04 10:04:05,613 | INFO     | all job control threads have been joined
[2025-06-04 12:04:16] 2025-06-04 10:04:05,804 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:05,955 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,065 | INFO     | all payload control threads have been joined
[2025-06-04 12:04:16] 2025-06-04 10:04:06,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,102 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,229 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:04:16] 2025-06-04 10:04:06,358 | INFO     | [data] control thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,428 | INFO     | [job] validate thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,619 | INFO     | [job] control thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,734 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,805 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,825 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:06,929 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:07,035 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:07,070 | INFO     | [payload] control thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:07,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:04:16] 2025-06-04 10:04:08,195 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:10,315 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:04:16] 2025-06-04 10:04:10,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23030111127360)>', '<ExcThread(monitor, started 23029803357952)>']
[2025-06-04 12:04:16] 2025-06-04 10:04:11,835 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:04:16] 2025-06-04 10:04:11,835 | INFO     | [monitor] control thread has ended
[2025-06-04 12:04:16] 2025-06-04 10:04:16,019 | INFO     | all workflow threads have been joined
[2025-06-04 12:04:16] 2025-06-04 10:04:16,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:04:16] 2025-06-04 10:04:16,019 | INFO     | traces error code: 0
[2025-06-04 12:04:16] 2025-06-04 10:04:16,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:04:16] 2025-06-04 10:04:16,187 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:04:16] 2025-06-04 10:04:16,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:04:16] 2025-06-04 10:04:16,195 [wrapper] pilotpid: 1561461
[2025-06-04 12:04:16] 2025-06-04 10:04:16,201 [wrapper] Pilot exit status: 0
[2025-06-04 12:04:16] 2025-06-04 10:04:16,216 [wrapper] pandaids: 6668849753
[2025-06-04 12:04:16] 2025-06-04 10:04:16,373 [wrapper] cleanup supervisor_pilot 2135308 1561462
[2025-06-04 12:04:16] 2025-06-04 10:04:16,377 [wrapper] Test setup, not cleaning
[2025-06-04 12:04:16] 2025-06-04 10:04:16,380 [wrapper] apfmon messages muted
[2025-06-04 12:04:16] 2025-06-04 10:04:16,385 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:04:16] 2025-06-04 10:04:16,388 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:04:16]  *** Error codes and diagnostics ***
[2025-06-04 12:04:16]     "exeErrorCode": 0,
[2025-06-04 12:04:16]     "exeErrorDiag": "",
[2025-06-04 12:04:16]     "pilotErrorCode": 0,
[2025-06-04 12:04:16]     "pilotErrorDiag": "",
[2025-06-04 12:04:16]  *** Listing of results directory ***
[2025-06-04 12:04:16] total 416864
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc    495897 May 28 21:04 pilot3.tar.gz
[2025-06-04 12:04:16] -rwx------ 1 boinc boinc     37140 May 28 21:08 runpilot2-wrapper.sh
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc      5111 May 28 21:08 queuedata.json
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc       100 Jun  4 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:04:16] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 08:48 run_atlas
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc       105 Jun  4 08:48 job.xml
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc      6685 Jun  4 08:48 init_data.xml
[2025-06-04 12:04:16] -rw-r--r-- 2 boinc boinc 222676603 Jun  4 08:48 EVNT.44871834._002059.pool.root.1
[2025-06-04 12:04:16] drwxrwx--x 2 boinc boinc      4096 Jun  4 08:48 shared
[2025-06-04 12:04:16] -rw-r--r-- 2 boinc boinc    508880 Jun  4 08:48 input.tar.gz
[2025-06-04 12:04:16] -rw-r--r-- 2 boinc boinc     15093 Jun  4 08:48 start_atlas.sh
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc         0 Jun  4 08:48 boinc_lockfile
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc      2558 Jun  4 08:48 pandaJob.out
[2025-06-04 12:04:16] -rw------- 1 boinc boinc    986745 Jun  4 08:48 agis_schedconf.cvmfs.json
[2025-06-04 12:04:16] drwx------ 4 boinc boinc      4096 Jun  4 08:48 pilot3
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc       529 Jun  4 12:03 boinc_task_state.xml
[2025-06-04 12:04:16] -rw------- 1 boinc boinc 197540411 Jun  4 12:03 HITS.44871837._089182.pool.root.1
[2025-06-04 12:04:16] -rw------- 1 boinc boinc        95 Jun  4 12:03 pilot_heartbeat.json
[2025-06-04 12:04:16] -rw------- 1 boinc boinc      1031 Jun  4 12:03 memory_monitor_summary.json
[2025-06-04 12:04:16] -rw------- 1 boinc boinc   1603667 Jun  4 12:03 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:04:16] -rw------- 1 boinc boinc    322899 Jun  4 12:03 log.44871837._089182.job.log.tgz.1
[2025-06-04 12:04:16] -rw------- 1 boinc boinc      7705 Jun  4 12:04 heartbeat.json
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc      8192 Jun  4 12:04 boinc_mmap_file
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc        27 Jun  4 12:04 wrapper_checkpoint.txt
[2025-06-04 12:04:16] -rw------- 1 boinc boinc      4673 Jun  4 12:04 pilotlog.txt
[2025-06-04 12:04:16] -rw------- 1 boinc boinc   1085696 Jun  4 12:04 log.44871837._089182.job.log.1
[2025-06-04 12:04:16] -rw------- 1 boinc boinc       357 Jun  4 12:04 output.list
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc       620 Jun  4 12:04 runtime_log
[2025-06-04 12:04:16] -rw------- 1 boinc boinc   1423360 Jun  4 12:04 result.tar.gz
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc      9026 Jun  4 12:04 runtime_log.err
[2025-06-04 12:04:16] -rw------- 1 boinc boinc       666 Jun  4 12:04 YyELDm8Jbe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0scKDmFzaZZn.diag
[2025-06-04 12:04:16] -rw-r--r-- 1 boinc boinc     20952 Jun  4 12:04 stderr.txt
[2025-06-04 12:04:16] HITS file was successfully produced:
[2025-06-04 12:04:16] -rw------- 1 boinc boinc 197540411 Jun  4 12:03 shared/HITS.pool.root.1
[2025-06-04 12:04:16]  *** Contents of shared directory: ***
[2025-06-04 12:04:16] total 412288
[2025-06-04 12:04:16] -rw-r--r-- 2 boinc boinc 222676603 Jun  4 08:48 ATLAS.root_0
[2025-06-04 12:04:16] -rw-r--r-- 2 boinc boinc    508880 Jun  4 08:48 input.tar.gz
[2025-06-04 12:04:16] -rw-r--r-- 2 boinc boinc     15093 Jun  4 08:48 start_atlas.sh
[2025-06-04 12:04:16] -rw------- 1 boinc boinc 197540411 Jun  4 12:03 HITS.pool.root.1
[2025-06-04 12:04:16] -rw------- 1 boinc boinc   1423360 Jun  4 12:04 result.tar.gz
12:04:18 (1557367): run_atlas exited; CPU time 45209.028347
12:04:18 (1557367): called boinc_finish(0)

</stderr_txt>
]]>

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