Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:19:35 (5809): wrapper (7.7.26015): starting
15:19:35 (5809): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 15:19:35] Arguments: --nthreads 8
[2025-05-29 15:19:35] Threads: 8
[2025-05-29 15:19:35] Checking for CVMFS
[2025-05-29 15:19:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 15:19:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 15:19:35] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 15:19:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 15:19:36] 2.11.2.0 11048 24669 95884 146563 2 132 22594694 25165825 4105 130560 0 13477769 99.749 14822152 5119 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 15:19:36] CVMFS is ok
[2025-05-29 15:19:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 15:19:36] Checking for apptainer binary...
[2025-05-29 15:19:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 15:19:36] Running /usr/bin/apptainer --version
[2025-05-29 15:19:36] apptainer version 1.3.2-1.el7
[2025-05-29 15:19:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 15:19:37] cg-vwn330.simple-grid.lan
[2025-05-29 15:19:37] apptainer works
[2025-05-29 15:19:37] Set ATHENA_PROC_NUMBER=8
[2025-05-29 15:19:37] Set ATHENA_CORE_NUMBER=8
[2025-05-29 15:19:37] Starting ATLAS job with PandaID=6668788795
[2025-05-29 15:19:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 20:49:27]  *** The last 200 lines of the pilot log: ***
[2025-05-29 20:49:27] 2025-05-29 18:43:49,226 | INFO     | extracted standard info from prmon json
[2025-05-29 20:49:27] 2025-05-29 18:43:49,226 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 20:49:27] 2025-05-29 18:43:49,226 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 20:49:27] 2025-05-29 18:43:49,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 20:49:27] 2025-05-29 18:43:49,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 20:49:27] 2025-05-29 18:43:49,233 | INFO     | fitting pss+swap vs Time
[2025-05-29 20:49:27] 2025-05-29 18:43:49,234 | INFO     | sum of square deviations: 9059954057.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,237 | INFO     | sum of deviations: 92147855684.99995
[2025-05-29 20:49:27] 2025-05-29 18:43:49,238 | INFO     | mean x: 1748534720.5
[2025-05-29 20:49:27] 2025-05-29 18:43:49,238 | INFO     | mean y: 2461049.025974026
[2025-05-29 20:49:27] 2025-05-29 18:43:49,238 | INFO     | -- intersect: -17781704750.39732
[2025-05-29 20:49:27] 2025-05-29 18:43:49,238 | INFO     | intersect: -17781704750.39732
[2025-05-29 20:49:27] 2025-05-29 18:43:49,239 | INFO     | chi2: 6.7764634881751205
[2025-05-29 20:49:27] 2025-05-29 18:43:49,239 | INFO     | sum of square deviations: 8625843592.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,242 | INFO     | sum of deviations: 110866000315.00003
[2025-05-29 20:49:27] 2025-05-29 18:43:49,243 | INFO     | mean x: 1748534568.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,243 | INFO     | mean y: 2467529.881188119
[2025-05-29 20:49:27] 2025-05-29 18:43:49,243 | INFO     | -- intersect: -22471048468.770187
[2025-05-29 20:49:27] 2025-05-29 18:43:49,243 | INFO     | intersect: -22471048468.770187
[2025-05-29 20:49:27] 2025-05-29 18:43:49,244 | INFO     | chi2: 6.04952279635969
[2025-05-29 20:49:27] 2025-05-29 18:43:49,244 | INFO     | current chi2=6.04952279635969 (change=10.72743464321673 %)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,244 | INFO     | right removable region: 302
[2025-05-29 20:49:27] 2025-05-29 18:43:49,245 | INFO     | sum of square deviations: 8625843592.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,248 | INFO     | sum of deviations: -14591386843.000004
[2025-05-29 20:49:27] 2025-05-29 18:43:49,248 | INFO     | mean x: 1748534873.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,248 | INFO     | mean y: 2498518.0066006603
[2025-05-29 20:49:27] 2025-05-29 18:43:49,248 | INFO     | -- intersect: 2960301829.45098
[2025-05-29 20:49:27] 2025-05-29 18:43:49,248 | INFO     | intersect: 2960301829.45098
[2025-05-29 20:49:27] 2025-05-29 18:43:49,249 | INFO     | chi2: 2.1159736598609697
[2025-05-29 20:49:27] 2025-05-29 18:43:49,249 | INFO     | current chi2=2.1159736598609697 (change=68.77466153911507 %)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,250 | INFO     | sum of square deviations: 8205826414.5
[2025-05-29 20:49:27] 2025-05-29 18:43:49,253 | INFO     | sum of deviations: -60854460405.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,253 | INFO     | mean x: 1748535025.5
[2025-05-29 20:49:27] 2025-05-29 18:43:49,253 | INFO     | mean y: 2515223.912751678
[2025-05-29 20:49:27] 2025-05-29 18:43:49,253 | INFO     | -- intersect: 12969661992.703983
[2025-05-29 20:49:27] 2025-05-29 18:43:49,253 | INFO     | intersect: 12969661992.703983
[2025-05-29 20:49:27] 2025-05-29 18:43:49,254 | INFO     | chi2: 0.9777434761006074
[2025-05-29 20:49:27] 2025-05-29 18:43:49,254 | INFO     | current chi2=0.9777434761006074 (change=53.792266196505956 %)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,254 | INFO     | sum of square deviations: 7799669962.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,257 | INFO     | sum of deviations: -60740651546.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,257 | INFO     | mean x: 1748535178.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,258 | INFO     | mean y: 2515163.385665529
[2025-05-29 20:49:27] 2025-05-29 18:43:49,258 | INFO     | -- intersect: 13619394657.038923
[2025-05-29 20:49:27] 2025-05-29 18:43:49,258 | INFO     | intersect: 13619394657.038923
[2025-05-29 20:49:27] 2025-05-29 18:43:49,258 | INFO     | chi2: 0.9641994646989782
[2025-05-29 20:49:27] 2025-05-29 18:43:49,258 | INFO     | current chi2=0.9641994646989782 (change=1.3852315799277755 %)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,259 | INFO     | left removable region: 30
[2025-05-29 20:49:27] 2025-05-29 18:43:49,259 | INFO     | sum of square deviations: 6239923508.0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,261 | INFO     | sum of deviations: -10132924018.499998
[2025-05-29 20:49:27] 2025-05-29 18:43:49,262 | INFO     | mean x: 1748535452.5
[2025-05-29 20:49:27] 2025-05-29 18:43:49,262 | INFO     | mean y: 2510204.8345588236
[2025-05-29 20:49:27] 2025-05-29 18:43:49,262 | INFO     | -- intersect: 2841932332.5450406
[2025-05-29 20:49:27] 2025-05-29 18:43:49,262 | INFO     | intersect: 2841932332.5450406
[2025-05-29 20:49:27] 2025-05-29 18:43:49,263 | INFO     | chi2: 0.07957660389701866
[2025-05-29 20:49:27] 2025-05-29 18:43:49,263 | INFO     | -- intersect: 2841932332.5450406
[2025-05-29 20:49:27] 2025-05-29 18:43:49,263 | INFO     | current memory leak: -1.62 B/s (using 272 data points, chi2=0.08)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | ..............................
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | . Timing measurements:
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | . get job = 0 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | . initial setup = 4 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | . payload setup = 166 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | . stage-in = 0 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,264 | INFO     | . payload execution = 18912 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,265 | INFO     | . stage-out = 8 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,265 | INFO     | . log creation = 1 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,265 | INFO     | ..............................
[2025-05-29 20:49:27] 2025-05-29 18:43:49,432 | INFO     | 
[2025-05-29 20:49:27] 2025-05-29 18:43:49,432 | INFO     | job summary report
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | --------------------------------------------------
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | PanDA job id: 6668788795
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | task id: 44871837
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | errors: (none)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | pilot state: finished 
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | transexitcode: 0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | exeerrorcode: 0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | exeerrordiag: 
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | exitcode: 0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,433 | INFO     | exitmsg: OK
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | cpuconsumptiontime: 71974 s
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | nevents: 400
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | neventsw: 0
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | pid: 16187
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | pgrp: 16187
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | corecount: 8
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | event service: False
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | sizes: {0: 2404355, 1: 2405211, 12: 2405211, 23: 2405239, 34: 2405267, 44: 2405295, 55: 2405451, 66: 2405479, 77: 2405507, 87: 2405563, 93: 2405797, 98: 2406105, 1
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | --------------------------------------------------
[2025-05-29 20:49:27] 2025-05-29 18:43:49,434 | INFO     | 
[2025-05-29 20:49:27] 2025-05-29 18:43:49,435 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-05-29 20:49:27] 2025-05-29 18:43:49,764 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,764 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,764 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | job 6668788795 has completed (purged errors)
[2025-05-29 20:49:27] 2025-05-29 18:43:49,766 | INFO     | overall cleanup function is called
[2025-05-29 20:49:27] 2025-05-29 18:43:50,776 | INFO     | --- collectZombieJob: --- 10, [16187]
[2025-05-29 20:49:27] 2025-05-29 18:43:50,776 | INFO     | zombie collector waiting for pid 16187
[2025-05-29 20:49:27] 2025-05-29 18:43:50,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 20:49:27] 2025-05-29 18:43:50,777 | INFO     | collected zombie processes
[2025-05-29 20:49:27] 2025-05-29 18:43:50,777 | INFO     | will attempt to kill all subprocesses of pid=16187
[2025-05-29 20:49:27] 2025-05-29 18:43:50,898 | INFO     | process IDs to be killed: [16187] (in reverse order)
[2025-05-29 20:49:27] 2025-05-29 18:43:51,745 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 20:49:27] 2025-05-29 18:43:51,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 20:49:27] 2025-05-29 18:43:51,749 | INFO     | did not find any defunct processes belonging to 16187
[2025-05-29 20:49:27] 2025-05-29 18:43:51,752 | INFO     | did not find any defunct processes belonging to 16187
[2025-05-29 20:49:27] 2025-05-29 18:43:51,752 | INFO     | ready for new job
[2025-05-29 20:49:27] 2025-05-29 18:43:51,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 20:49:27] 2025-05-29 18:43:51,754 | INFO     | **************************************
[2025-05-29 20:49:27] 2025-05-29 18:43:51,755 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 20:49:27] 2025-05-29 18:43:51,755 | INFO     | **************************************
[2025-05-29 20:49:27] 2025-05-29 18:43:51,755 | INFO     | 
[2025-05-29 20:49:27] 2025-05-29 18:43:51,755 | INFO     | pilot is running in a VM
[2025-05-29 20:49:27] 2025-05-29 18:43:51,756 | INFO     | architecture information:
[2025-05-29 20:49:27] 2025-05-29 18:43:51,773 | INFO     | executing command: cat /etc/os-release
[2025-05-29 20:49:27] 2025-05-29 18:43:52,023 | INFO     | cat /etc/os-release:
[2025-05-29 20:49:27] NAME="CentOS Linux"
[2025-05-29 20:49:27] VERSION="7 (Core)"
[2025-05-29 20:49:27] ID="centos"
[2025-05-29 20:49:27] ID_LIKE="rhel fedora"
[2025-05-29 20:49:27] VERSION_ID="7"
[2025-05-29 20:49:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 20:49:27] ANSI_COLOR="0;31"
[2025-05-29 20:49:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 20:49:27] HOME_URL="https://www.centos.org/"
[2025-05-29 20:49:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 20:49:27] 
[2025-05-29 20:49:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 20:49:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 20:49:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 20:49:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 20:49:27] 
[2025-05-29 20:49:27] 2025-05-29 18:43:52,023 | INFO     | **************************************
[2025-05-29 20:49:27] 2025-05-29 18:43:52,526 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-05-29 20:49:27] 2025-05-29 18:43:52,712 | INFO     | sufficient remaining disk space (495313747968 B)
[2025-05-29 20:49:27] 2025-05-29 18:43:52,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 20:49:27] 2025-05-29 18:43:52,712 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 20:49:27] 2025-05-29 18:43:52,712 | INFO     | update_server=False
[2025-05-29 20:49:27] 2025-05-29 18:43:52,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 20:49:27] 2025-05-29 18:43:52,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 20:49:27] 2025-05-29 18:43:52,713 | INFO     | aborting loop
[2025-05-29 20:49:27] 2025-05-29 18:43:52,717 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 20:49:27] 2025-05-29 18:43:52,718 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 20:49:27] 2025-05-29 18:43:52,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 20:49:27] 2025-05-29 18:43:52,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 20:49:27] 2025-05-29 18:43:52,746 | INFO     | all payload control threads have been joined
[2025-05-29 20:49:27] 2025-05-29 18:43:52,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 20:49:27] 2025-05-29 18:43:53,329 | INFO     | all data control threads have been joined
[2025-05-29 20:49:27] 2025-05-29 18:43:53,339 | INFO     | all job control threads have been joined
[2025-05-29 20:49:27] 2025-05-29 18:43:53,718 | INFO     | [job] retrieve thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:53,719 | INFO     | [job] job monitor thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:53,752 | INFO     | [payload] control thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,335 | INFO     | [data] control thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,345 | INFO     | [job] control thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,379 | INFO     | [data] copytool_in thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,392 | INFO     | [payload] failed_post thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,452 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 20:49:27] 2025-05-29 18:43:54,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,521 | INFO     | [job] validate thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,581 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,865 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,870 | INFO     | [data] copytool_out thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:54,916 | INFO     | [payload] validate_post thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:55,111 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:55,458 | INFO     | [job] queue monitor thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:43:55,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 20:49:27] 2025-05-29 18:43:59,953 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 20:49:27] 2025-05-29 18:44:00,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140157296277312)>', '<ExcThread(monitor, started 140156719851264)>']
[2025-05-29 20:49:27] 2025-05-29 18:44:01,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 20:49:27] 2025-05-29 18:44:01,772 | INFO     | [monitor] control thread has ended
[2025-05-29 20:49:27] 2025-05-29 18:44:05,933 | INFO     | all workflow threads have been joined
[2025-05-29 20:49:27] 2025-05-29 18:44:05,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 20:49:27] 2025-05-29 18:44:05,934 | INFO     | traces error code: 0
[2025-05-29 20:49:27] 2025-05-29 18:44:05,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 20:49:27] 2025-05-29 18:44:06,263 [wrapper] ==== pilot stdout END ====
[2025-05-29 20:49:27] 2025-05-29 18:44:06,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 20:49:27] 2025-05-29 18:44:06,474 [wrapper] pilotpid: 9612
[2025-05-29 20:49:27] 2025-05-29 18:44:06,579 [wrapper] Pilot exit status: 0
[2025-05-29 20:49:27] 2025-05-29 18:44:06,729 [wrapper] pandaids: 6668788795
[2025-05-29 20:49:27] 2025-05-29 18:44:06,783 [wrapper] cleanup supervisor_pilot 18961 9613
[2025-05-29 20:49:27] 2025-05-29 18:44:06,791 [wrapper] Test setup, not cleaning
[2025-05-29 20:49:27] 2025-05-29 18:44:06,797 [wrapper] apfmon messages muted
[2025-05-29 20:49:27] 2025-05-29 18:44:06,804 [wrapper] ==== wrapper stdout END ====
[2025-05-29 20:49:27] 2025-05-29 18:44:06,811 [wrapper] ==== wrapper stderr END ====
[2025-05-29 20:49:27]  *** Error codes and diagnostics ***
[2025-05-29 20:49:27]     "exeErrorCode": 0,
[2025-05-29 20:49:27]     "exeErrorDiag": "",
[2025-05-29 20:49:27]     "pilotErrorCode": 0,
[2025-05-29 20:49:27]     "pilotErrorDiag": "",
[2025-05-29 20:49:27]  *** Listing of results directory ***
[2025-05-29 20:49:27] total 419616
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc    495897 May 28 20:37 pilot3.tar.gz
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc      5111 May 28 20:43 queuedata.json
[2025-05-29 20:49:27] -rwx------. 1 boinc boinc     37140 May 28 20:46 runpilot2-wrapper.sh
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc       100 May 29 15:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 20:49:27] -rwxr-xr-x. 1 boinc boinc      7986 May 29 15:19 run_atlas
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc       105 May 29 15:19 job.xml
[2025-05-29 20:49:27] -rw-r--r--. 2 boinc boinc 225017283 May 29 15:19 EVNT.44871834._003462.pool.root.1
[2025-05-29 20:49:27] -rw-r--r--. 2 boinc boinc     15093 May 29 15:19 start_atlas.sh
[2025-05-29 20:49:27] drwxrwx--x. 2 boinc boinc        68 May 29 15:19 shared
[2025-05-29 20:49:27] -rw-r--r--. 2 boinc boinc    508882 May 29 15:19 input.tar.gz
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc      6370 May 29 15:19 init_data.xml
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc         0 May 29 15:19 boinc_lockfile
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc      2558 May 29 15:19 pandaJob.out
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc    992820 May 29 15:20 agis_schedconf.cvmfs.json
[2025-05-29 20:49:27] drwx------. 4 boinc boinc      4096 May 29 15:20 pilot3
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc 196720932 May 29 20:40 HITS.44871837._088921.pool.root.1
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc       531 May 29 20:41 boinc_task_state.xml
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc      1017 May 29 20:41 memory_monitor_summary.json
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc   1603667 May 29 20:42 agis_ddmendpoints.agis.ALL.json
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc    430487 May 29 20:42 log.44871837._088921.job.log.tgz.1
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc        95 May 29 20:43 pilot_heartbeat.json
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc      7691 May 29 20:43 heartbeat.json
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc      4539 May 29 20:44 pilotlog.txt
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc   1630179 May 29 20:44 log.44871837._088921.job.log.1
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc       357 May 29 20:44 output.list
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc       620 May 29 20:44 runtime_log
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc   2078720 May 29 20:44 result.tar.gz
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc      8659 May 29 20:44 runtime_log.err
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc       657 May 29 20:44 o41MDm7xae7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTqcKDmvdvVpm.diag
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc      8192 May 29 20:49 boinc_mmap_file
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc        28 May 29 20:49 wrapper_checkpoint.txt
[2025-05-29 20:49:27] -rw-r--r--. 1 boinc boinc     20511 May 29 20:49 stderr.txt
[2025-05-29 20:49:27] HITS file was successfully produced:
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc 196720932 May 29 20:40 shared/HITS.pool.root.1
[2025-05-29 20:49:27]  *** Contents of shared directory: ***
[2025-05-29 20:49:27] total 414404
[2025-05-29 20:49:27] -rw-r--r--. 2 boinc boinc 225017283 May 29 15:19 ATLAS.root_0
[2025-05-29 20:49:27] -rw-r--r--. 2 boinc boinc     15093 May 29 15:19 start_atlas.sh
[2025-05-29 20:49:27] -rw-r--r--. 2 boinc boinc    508882 May 29 15:19 input.tar.gz
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc 196720932 May 29 20:40 HITS.pool.root.1
[2025-05-29 20:49:27] -rw-------. 1 boinc boinc   2078720 May 29 20:44 result.tar.gz
20:49:29 (5809): run_atlas exited; CPU time 72239.676728
20:49:29 (5809): called boinc_finish(0)

</stderr_txt>
]]>

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