Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:07:04 (25200): wrapper (7.7.26015): starting
14:07:04 (25200): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 14:07:04] Arguments: --nthreads 8
[2025-05-29 14:07:04] Threads: 8
[2025-05-29 14:07:04] Checking for CVMFS
[2025-05-29 14:07:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 14:07:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 14:07:05] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 14:07:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 14:07:06] 2.11.2.0 26867 24546 91992 146561 2 14 17795789 25165824 4633 130560 0 13556189 99.826 14410938 1752 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 14:07:06] CVMFS is ok
[2025-05-29 14:07:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 14:07:06] Checking for apptainer binary...
[2025-05-29 14:07:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 14:07:06] Running /usr/bin/apptainer --version
[2025-05-29 14:07:06] apptainer version 1.3.2-1.el7
[2025-05-29 14:07:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 14:07:15] cg-vwn435.simple-grid.lan
[2025-05-29 14:07:15] apptainer works
[2025-05-29 14:07:16] Set ATHENA_PROC_NUMBER=8
[2025-05-29 14:07:16] Set ATHENA_CORE_NUMBER=8
[2025-05-29 14:07:16] Starting ATLAS job with PandaID=6668787834
[2025-05-29 14:07:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 19:46:00]  *** The last 200 lines of the pilot log: ***
[2025-05-29 19:46:00] 2025-05-29 17:26:23,429 | INFO     | extracted standard info from prmon json
[2025-05-29 19:46:00] 2025-05-29 17:26:23,429 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 19:46:00] 2025-05-29 17:26:23,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 19:46:00] 2025-05-29 17:26:23,430 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 19:46:00] 2025-05-29 17:26:23,430 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 19:46:00] 2025-05-29 17:26:23,436 | INFO     | fitting pss+swap vs Time
[2025-05-29 19:46:00] 2025-05-29 17:26:23,437 | INFO     | sum of square deviations: 8456158550.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,440 | INFO     | sum of deviations: 75225032494.00003
[2025-05-29 19:46:00] 2025-05-29 17:26:23,440 | INFO     | mean x: 1748530299.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,440 | INFO     | mean y: 2468704.5980066443
[2025-05-29 19:46:00] 2025-05-29 17:26:23,440 | INFO     | -- intersect: -15552259577.90547
[2025-05-29 19:46:00] 2025-05-29 17:26:23,440 | INFO     | intersect: -15552259577.90547
[2025-05-29 19:46:00] 2025-05-29 17:26:23,441 | INFO     | chi2: 7.375528974354669
[2025-05-29 19:46:00] 2025-05-29 17:26:23,441 | INFO     | sum of square deviations: 8041713570.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,452 | INFO     | sum of deviations: 94068598736.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,453 | INFO     | mean x: 1748530146.5
[2025-05-29 19:46:00] 2025-05-29 17:26:23,453 | INFO     | mean y: 2475539.121621622
[2025-05-29 19:46:00] 2025-05-29 17:26:23,453 | INFO     | -- intersect: -20451098104.99759
[2025-05-29 19:46:00] 2025-05-29 17:26:23,453 | INFO     | intersect: -20451098104.99759
[2025-05-29 19:46:00] 2025-05-29 17:26:23,454 | INFO     | chi2: 6.658148722434947
[2025-05-29 19:46:00] 2025-05-29 17:26:23,454 | INFO     | current chi2=6.658148722434947 (change=9.726492220613776 %)
[2025-05-29 19:46:00] 2025-05-29 17:26:23,454 | INFO     | right removable region: 295
[2025-05-29 19:46:00] 2025-05-29 17:26:23,454 | INFO     | sum of square deviations: 8041713570.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,457 | INFO     | sum of deviations: -30252445072.500008
[2025-05-29 19:46:00] 2025-05-29 17:26:23,457 | INFO     | mean x: 1748530451.5
[2025-05-29 19:46:00] 2025-05-29 17:26:23,457 | INFO     | mean y: 2507490.881756757
[2025-05-29 19:46:00] 2025-05-29 17:26:23,458 | INFO     | -- intersect: 6580374382.2037
[2025-05-29 19:46:00] 2025-05-29 17:26:23,458 | INFO     | intersect: 6580374382.2037
[2025-05-29 19:46:00] 2025-05-29 17:26:23,458 | INFO     | chi2: 2.5753452603968507
[2025-05-29 19:46:00] 2025-05-29 17:26:23,458 | INFO     | current chi2=2.5753452603968507 (change=65.08256873030338 %)
[2025-05-29 19:46:00] 2025-05-29 17:26:23,459 | INFO     | sum of square deviations: 7641036290.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,461 | INFO     | sum of deviations: -83949814365.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,462 | INFO     | mean x: 1748530604.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,462 | INFO     | mean y: 2527833.8041237113
[2025-05-29 19:46:00] 2025-05-29 17:26:23,462 | INFO     | -- intersect: 19213118393.28455
[2025-05-29 19:46:00] 2025-05-29 17:26:23,462 | INFO     | intersect: 19213118393.28455
[2025-05-29 19:46:00] 2025-05-29 17:26:23,463 | INFO     | chi2: 1.0709949830993184
[2025-05-29 19:46:00] 2025-05-29 17:26:23,463 | INFO     | current chi2=1.0709949830993184 (change=58.413537805246264 %)
[2025-05-29 19:46:00] 2025-05-29 17:26:23,463 | INFO     | sum of square deviations: 7253894147.5
[2025-05-29 19:46:00] 2025-05-29 17:26:23,466 | INFO     | sum of deviations: -87821312101.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,466 | INFO     | mean x: 1748530756.5
[2025-05-29 19:46:00] 2025-05-29 17:26:23,466 | INFO     | mean y: 2529338.6643356644
[2025-05-29 19:46:00] 2025-05-29 17:26:23,466 | INFO     | -- intersect: 21171609306.243797
[2025-05-29 19:46:00] 2025-05-29 17:26:23,466 | INFO     | intersect: 21171609306.243797
[2025-05-29 19:46:00] 2025-05-29 17:26:23,467 | INFO     | chi2: 1.0349607461055745
[2025-05-29 19:46:00] 2025-05-29 17:26:23,467 | INFO     | current chi2=1.0349607461055745 (change=3.3645570298999465 %)
[2025-05-29 19:46:00] 2025-05-29 17:26:23,467 | INFO     | left removable region: 30
[2025-05-29 19:46:00] 2025-05-29 17:26:23,468 | INFO     | sum of square deviations: 5770452380.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,486 | INFO     | sum of deviations: -40997650185.999985
[2025-05-29 19:46:00] 2025-05-29 17:26:23,487 | INFO     | mean x: 1748531031.0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,487 | INFO     | mean y: 2526183.8075471697
[2025-05-29 19:46:00] 2025-05-29 17:26:23,487 | INFO     | -- intersect: 12425410704.397575
[2025-05-29 19:46:00] 2025-05-29 17:26:23,487 | INFO     | intersect: 12425410704.397575
[2025-05-29 19:46:00] 2025-05-29 17:26:23,487 | INFO     | chi2: 0.20534941843949384
[2025-05-29 19:46:00] 2025-05-29 17:26:23,488 | INFO     | -- intersect: 12425410704.397575
[2025-05-29 19:46:00] 2025-05-29 17:26:23,488 | INFO     | current memory leak: -7.10 B/s (using 265 data points, chi2=0.21)
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | ..............................
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . Timing measurements:
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . get job = 0 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . initial setup = 13 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . payload setup = 162 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . stage-in = 0 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . payload execution = 18486 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . stage-out = 3 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | . log creation = 1 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,489 | INFO     | ..............................
[2025-05-29 19:46:00] 2025-05-29 17:26:23,756 | INFO     | 
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | job summary report
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | --------------------------------------------------
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | PanDA job id: 6668787834
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | task id: 44871837
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | errors: (none)
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | pilot state: finished 
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | transexitcode: 0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,757 | INFO     | exeerrorcode: 0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | exeerrordiag: 
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | exitcode: 0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | exitmsg: OK
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | cpuconsumptiontime: 69921 s
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | nevents: 400
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | neventsw: 0
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | pid: 13920
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | pgrp: 13920
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | corecount: 8
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | event service: False
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | sizes: {0: 2404406, 1: 2405091, 2: 2405290, 13: 2405290, 23: 2405346, 34: 2405374, 45: 2405530, 56: 2405558, 66: 2405586, 77: 2405614, 88: 2405670, 95: 2406184, 98
[2025-05-29 19:46:00] 2025-05-29 17:26:23,758 | INFO     | --------------------------------------------------
[2025-05-29 19:46:00] 2025-05-29 17:26:23,759 | INFO     | 
[2025-05-29 19:46:00] 2025-05-29 17:26:23,759 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-05-29 19:46:00] 2025-05-29 17:26:24,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,195 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,195 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | job 6668787834 has completed (purged errors)
[2025-05-29 19:46:00] 2025-05-29 17:26:24,197 | INFO     | overall cleanup function is called
[2025-05-29 19:46:00] 2025-05-29 17:26:25,206 | INFO     | --- collectZombieJob: --- 10, [13920]
[2025-05-29 19:46:00] 2025-05-29 17:26:25,207 | INFO     | zombie collector waiting for pid 13920
[2025-05-29 19:46:00] 2025-05-29 17:26:25,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 19:46:00] 2025-05-29 17:26:25,207 | INFO     | collected zombie processes
[2025-05-29 19:46:00] 2025-05-29 17:26:25,207 | INFO     | will attempt to kill all subprocesses of pid=13920
[2025-05-29 19:46:00] 2025-05-29 17:26:25,343 | INFO     | process IDs to be killed: [13920] (in reverse order)
[2025-05-29 19:46:00] 2025-05-29 17:26:26,225 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 19:46:00] 2025-05-29 17:26:26,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 19:46:00] 2025-05-29 17:26:26,229 | INFO     | did not find any defunct processes belonging to 13920
[2025-05-29 19:46:00] 2025-05-29 17:26:26,232 | INFO     | did not find any defunct processes belonging to 13920
[2025-05-29 19:46:00] 2025-05-29 17:26:26,232 | INFO     | ready for new job
[2025-05-29 19:46:00] 2025-05-29 17:26:26,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 19:46:00] 2025-05-29 17:26:26,234 | INFO     | **************************************
[2025-05-29 19:46:00] 2025-05-29 17:26:26,234 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 19:46:00] 2025-05-29 17:26:26,235 | INFO     | **************************************
[2025-05-29 19:46:00] 2025-05-29 17:26:26,235 | INFO     | 
[2025-05-29 19:46:00] 2025-05-29 17:26:26,235 | INFO     | pilot is running in a VM
[2025-05-29 19:46:00] 2025-05-29 17:26:26,235 | INFO     | architecture information:
[2025-05-29 19:46:00] 2025-05-29 17:26:26,246 | INFO     | executing command: cat /etc/os-release
[2025-05-29 19:46:00] 2025-05-29 17:26:26,513 | INFO     | cat /etc/os-release:
[2025-05-29 19:46:00] NAME="CentOS Linux"
[2025-05-29 19:46:00] VERSION="7 (Core)"
[2025-05-29 19:46:00] ID="centos"
[2025-05-29 19:46:00] ID_LIKE="rhel fedora"
[2025-05-29 19:46:00] VERSION_ID="7"
[2025-05-29 19:46:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 19:46:00] ANSI_COLOR="0;31"
[2025-05-29 19:46:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 19:46:00] HOME_URL="https://www.centos.org/"
[2025-05-29 19:46:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 19:46:00] 
[2025-05-29 19:46:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 19:46:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 19:46:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 19:46:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 19:46:00] 
[2025-05-29 19:46:00] 2025-05-29 17:26:26,513 | INFO     | **************************************
[2025-05-29 19:46:00] 2025-05-29 17:26:27,017 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-05-29 19:46:00] 2025-05-29 17:26:27,285 | INFO     | sufficient remaining disk space (495306407936 B)
[2025-05-29 19:46:00] 2025-05-29 17:26:27,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 19:46:00] 2025-05-29 17:26:27,286 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 19:46:00] 2025-05-29 17:26:27,286 | INFO     | update_server=False
[2025-05-29 19:46:00] 2025-05-29 17:26:27,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 19:46:00] 2025-05-29 17:26:27,286 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 19:46:00] 2025-05-29 17:26:27,287 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 19:46:00] 2025-05-29 17:26:27,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 19:46:00] 2025-05-29 17:26:27,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 19:46:00] 2025-05-29 17:26:27,446 | INFO     | all data control threads have been joined
[2025-05-29 19:46:00] 2025-05-29 17:26:27,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 19:46:00] 2025-05-29 17:26:27,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 19:46:00] 2025-05-29 17:26:27,986 | INFO     | aborting loop
[2025-05-29 19:46:00] 2025-05-29 17:26:28,293 | INFO     | [job] retrieve thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:28,349 | INFO     | [payload] validate_post thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:28,452 | INFO     | [data] control thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:28,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 19:46:00] 2025-05-29 17:26:28,652 | INFO     | [payload] failed_post thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:28,716 | INFO     | all job control threads have been joined
[2025-05-29 19:46:00] 2025-05-29 17:26:28,767 | INFO     | all payload control threads have been joined
[2025-05-29 19:46:00] 2025-05-29 17:26:28,925 | INFO     | [data] copytool_in thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:28,991 | INFO     | [job] job monitor thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,258 | INFO     | [job] validate thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,287 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,334 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,645 | INFO     | [job] queue monitor thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,722 | INFO     | [job] control thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,773 | INFO     | [payload] control thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,777 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:29,901 | INFO     | [data] copytool_out thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:30,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 19:46:00] 2025-05-29 17:26:34,501 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 19:46:00] 2025-05-29 17:26:35,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771408947008)>', '<ExcThread(monitor, started 139770969708288)>']
[2025-05-29 19:46:00] 2025-05-29 17:26:35,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 19:46:00] 2025-05-29 17:26:35,335 | INFO     | [monitor] control thread has ended
[2025-05-29 19:46:00] 2025-05-29 17:26:40,099 | INFO     | all workflow threads have been joined
[2025-05-29 19:46:00] 2025-05-29 17:26:40,100 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 19:46:00] 2025-05-29 17:26:40,100 | INFO     | traces error code: 0
[2025-05-29 19:46:00] 2025-05-29 17:26:40,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 19:46:00] 2025-05-29 17:26:40,353 [wrapper] ==== pilot stdout END ====
[2025-05-29 19:46:00] 2025-05-29 17:26:40,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 19:46:00] 2025-05-29 17:26:40,479 [wrapper] pilotpid: 1272
[2025-05-29 19:46:00] 2025-05-29 17:26:40,575 [wrapper] Pilot exit status: 0
[2025-05-29 19:46:00] 2025-05-29 17:26:41,023 [wrapper] pandaids: 6668787834
[2025-05-29 19:46:00] 2025-05-29 17:26:41,712 [wrapper] cleanup supervisor_pilot 16225 1273
[2025-05-29 19:46:00] 2025-05-29 17:26:41,757 [wrapper] Test setup, not cleaning
[2025-05-29 19:46:00] 2025-05-29 17:26:41,851 [wrapper] apfmon messages muted
[2025-05-29 19:46:00] 2025-05-29 17:26:41,942 [wrapper] ==== wrapper stdout END ====
[2025-05-29 19:46:00] 2025-05-29 17:26:42,045 [wrapper] ==== wrapper stderr END ====
[2025-05-29 19:46:00]  *** Error codes and diagnostics ***
[2025-05-29 19:46:00]     "exeErrorCode": 0,
[2025-05-29 19:46:00]     "exeErrorDiag": "",
[2025-05-29 19:46:00]     "pilotErrorCode": 0,
[2025-05-29 19:46:00]     "pilotErrorDiag": "",
[2025-05-29 19:46:00]  *** Listing of results directory ***
[2025-05-29 19:46:00] total 425492
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc    495897 May 28 20:10 pilot3.tar.gz
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc      5111 May 28 20:13 queuedata.json
[2025-05-29 19:46:00] -rwx------. 1 boinc boinc     37140 May 28 20:14 runpilot2-wrapper.sh
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc       100 May 29 14:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 19:46:00] -rwxr-xr-x. 1 boinc boinc      7986 May 29 14:07 run_atlas
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc       105 May 29 14:07 job.xml
[2025-05-29 19:46:00] -rw-r--r--. 2 boinc boinc 227730798 May 29 14:07 EVNT.44871834._003444.pool.root.1
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc      6371 May 29 14:07 init_data.xml
[2025-05-29 19:46:00] -rw-r--r--. 2 boinc boinc     15093 May 29 14:07 start_atlas.sh
[2025-05-29 19:46:00] drwxrwx--x. 2 boinc boinc        68 May 29 14:07 shared
[2025-05-29 19:46:00] -rw-r--r--. 2 boinc boinc    508877 May 29 14:07 input.tar.gz
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc         0 May 29 14:07 boinc_lockfile
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc      2559 May 29 14:07 pandaJob.out
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc    993012 May 29 14:10 agis_schedconf.cvmfs.json
[2025-05-29 19:46:00] drwx------. 4 boinc boinc      4096 May 29 14:10 pilot3
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc 200109522 May 29 19:23 HITS.44871837._088465.pool.root.1
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc       531 May 29 19:23 boinc_task_state.xml
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc      1017 May 29 19:24 memory_monitor_summary.json
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc   1603667 May 29 19:24 agis_ddmendpoints.agis.ALL.json
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc    419182 May 29 19:24 log.44871837._088465.job.log.tgz.1
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc        95 May 29 19:25 pilot_heartbeat.json
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc      7696 May 29 19:26 heartbeat.json
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc      4539 May 29 19:26 pilotlog.txt
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc   1594897 May 29 19:26 log.44871837._088465.job.log.1
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc       357 May 29 19:26 output.list
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc       620 May 29 19:26 runtime_log
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc   2037760 May 29 19:26 result.tar.gz
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc       657 May 29 19:26 yrQLDmcTae7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFncKDm2UKWzn.diag
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc      8659 May 29 19:26 runtime_log.err
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc      8192 May 29 19:46 boinc_mmap_file
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc        28 May 29 19:46 wrapper_checkpoint.txt
[2025-05-29 19:46:00] -rw-r--r--. 1 boinc boinc     20505 May 29 19:46 stderr.txt
[2025-05-29 19:46:00] HITS file was successfully produced:
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc 200109522 May 29 19:23 shared/HITS.pool.root.1
[2025-05-29 19:46:00]  *** Contents of shared directory: ***
[2025-05-29 19:46:00] total 420324
[2025-05-29 19:46:00] -rw-r--r--. 2 boinc boinc 227730798 May 29 14:07 ATLAS.root_0
[2025-05-29 19:46:00] -rw-r--r--. 2 boinc boinc     15093 May 29 14:07 start_atlas.sh
[2025-05-29 19:46:00] -rw-r--r--. 2 boinc boinc    508877 May 29 14:07 input.tar.gz
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc 200109522 May 29 19:23 HITS.pool.root.1
[2025-05-29 19:46:00] -rw-------. 1 boinc boinc   2037760 May 29 19:26 result.tar.gz
19:46:02 (25200): run_atlas exited; CPU time 70180.551296
19:46:02 (25200): called boinc_finish(0)

</stderr_txt>
]]>

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